Wall clock time and date at job start Tue Mar 31 2020 12:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46959 * 2 1 4 4 C 1.50699 * 109.46953 * 239.99824 * 2 1 3 5 5 N 1.28015 * 119.99886 * 120.00266 * 4 2 1 6 6 N 1.40099 * 119.99996 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99715 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00010 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99998 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.70505 * 54.41180 * 9 7 6 11 11 C 1.53475 * 109.74385 * 293.80622 * 9 7 6 12 12 O 1.43172 * 108.25371 * 180.57366 * 11 9 7 13 13 C 1.36103 * 116.71822 * 46.16793 * 12 11 9 14 14 C 1.38708 * 119.40142 * 162.97826 * 13 12 11 15 15 C 1.38194 * 120.06410 * 179.91687 * 14 13 12 16 16 C 1.38254 * 120.11778 * 359.44212 * 15 14 13 17 17 C 1.38188 * 120.10767 * 0.63459 * 16 15 14 18 18 C 1.38702 * 120.07199 * 359.69407 * 17 16 15 19 19 O 1.36105 * 119.39990 * 179.84090 * 18 17 16 20 20 C 1.53002 * 109.46880 * 120.00140 * 2 1 3 21 21 C 1.50709 * 109.46995 * 294.99994 * 20 2 1 22 22 H 1.08000 * 119.99537 * 0.02562 * 21 20 2 23 23 C 1.37875 * 119.99774 * 180.02562 * 21 20 2 24 24 N 1.31516 * 119.99554 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47038 * 90.00247 * 25 23 21 27 27 H 1.48500 * 109.46972 * 210.00188 * 25 23 21 28 28 H 1.48499 * 109.47093 * 329.99611 * 25 23 21 29 29 H 1.08996 * 109.47247 * 299.99871 * 1 2 3 30 30 H 1.09004 * 109.47102 * 60.00443 * 1 2 3 31 31 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00525 * 299.99633 * 4 2 1 33 33 H 0.96996 * 120.00095 * 0.02562 * 6 5 4 34 34 H 1.09004 * 109.70336 * 300.25757 * 11 9 7 35 35 H 1.08991 * 109.70965 * 60.83706 * 11 9 7 36 36 H 1.08002 * 119.96266 * 359.63227 * 14 13 12 37 37 H 1.08003 * 119.93543 * 179.71188 * 15 14 13 38 38 H 1.07992 * 119.94498 * 180.34635 * 16 15 14 39 39 H 1.08000 * 119.96842 * 179.71812 * 17 16 15 40 40 H 1.08997 * 109.47387 * 54.99588 * 20 2 1 41 41 H 1.09002 * 109.46964 * 175.00396 * 20 2 1 42 42 H 0.96998 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.7683 -0.0883 -2.0731 6 7 3.2357 -0.7489 -3.2167 7 6 4.0102 -0.0938 -4.1041 8 8 4.3028 1.0676 -3.9123 9 6 4.5125 -0.8042 -5.3346 10 1 3.6722 -1.2345 -5.8793 11 6 5.4901 -1.9156 -4.9289 12 8 5.9567 -2.5591 -6.1197 13 6 6.3480 -1.7482 -7.1403 14 6 7.1280 -2.2683 -8.1626 15 6 7.5315 -1.4576 -9.2065 16 6 7.1496 -0.1293 -9.2410 17 6 6.3739 0.3956 -8.2248 18 6 5.9711 -0.4108 -7.1706 19 8 5.2101 0.1211 -6.1755 20 6 2.0400 -0.7213 1.2493 21 6 1.6412 0.0570 2.4767 22 1 1.0799 0.9742 2.3757 23 6 1.9931 -0.4017 3.7283 24 7 1.6456 0.2778 4.7993 25 14 2.9634 -1.9884 3.9028 26 1 4.4169 -1.6850 3.8781 27 1 2.6160 -2.6420 5.1902 28 1 2.6286 -2.8995 2.7790 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7715 -1.7445 -1.4014 33 1 3.0014 -1.6776 -3.3702 34 1 6.3334 -1.4844 -4.3895 35 1 4.9799 -2.6403 -4.2945 36 1 7.4240 -3.3067 -8.1403 37 1 8.1426 -1.8636 -9.9990 38 1 7.4618 0.5003 -10.0609 39 1 6.0807 1.4347 -8.2517 40 1 1.6053 -1.7198 1.2952 41 1 3.1263 -0.7995 1.2056 42 1 1.8934 -0.0447 5.6799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765994232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:49 Heat of formation + Delta-G solvation = -63.651451 kcal Electronic energy + Delta-G solvation = -25213.338743 eV Core-core repulsion = 21352.399883 eV Total energy + Delta-G solvation = -3860.938860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62029 -40.79371 -38.79074 -38.56231 -38.21052 -36.47116 -34.47993 -33.39200 -31.73230 -31.67808 -29.70525 -29.28795 -26.65767 -25.72347 -23.97381 -23.57505 -22.54753 -21.73953 -20.75710 -19.98286 -19.35477 -18.90089 -18.55822 -18.01357 -17.49730 -16.86006 -16.48257 -16.26374 -15.94301 -15.75501 -15.47704 -15.29821 -15.21930 -14.94082 -14.90455 -14.50282 -14.47789 -14.02123 -13.42378 -13.22701 -12.90951 -12.88900 -12.79481 -12.47553 -12.42548 -12.27373 -11.89287 -11.79304 -11.72807 -11.57730 -11.35329 -11.24282 -10.93071 -10.71521 -10.03571 -9.70832 -9.19161 -8.22789 -6.26114 0.24288 0.25694 0.65467 0.88881 1.40533 1.41318 1.51529 1.52492 1.88406 2.18121 2.40581 2.69243 2.88186 3.09586 3.12866 3.46413 3.50868 3.78550 3.93811 3.96333 4.09182 4.19933 4.28274 4.38258 4.39465 4.47659 4.49944 4.60951 4.79243 4.92401 5.06708 5.11321 5.17738 5.20415 5.35828 5.48654 5.49681 5.60019 5.64317 5.70324 5.71630 5.90520 6.24041 6.33356 6.36796 6.81725 7.25718 7.37057 8.93644 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002166 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.141608 B =12924.480787 C =13456.598307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 H 0.055 0.945 4 C 0.122 3.878 5 N -0.293 5.293 6 N -0.569 5.569 7 C 0.541 3.459 8 O -0.537 6.537 9 C 0.049 3.951 10 H 0.143 0.857 11 C 0.036 3.964 12 O -0.302 6.302 13 C 0.026 3.974 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.127 4.127 18 C 0.025 3.975 19 O -0.310 6.310 20 C 0.001 3.999 21 C -0.520 4.520 22 H 0.038 0.962 23 C 0.000 4.000 24 N -0.953 5.953 25 Si 0.946 3.054 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.232 1.232 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.407 0.593 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.012 0.988 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -12.138 -31.192 34.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 H 0.074 0.926 4 C -0.092 4.092 5 N -0.096 5.096 6 N -0.314 5.314 7 C 0.326 3.674 8 O -0.410 6.410 9 C -0.012 4.012 10 H 0.160 0.840 11 C -0.040 4.040 12 O -0.216 6.216 13 C -0.019 4.019 14 C -0.135 4.135 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.146 4.146 18 C -0.019 4.019 19 O -0.225 6.225 20 C -0.038 4.038 21 C -0.558 4.558 22 H 0.056 0.944 23 C -0.196 4.196 24 N -0.594 5.594 25 Si 0.770 3.230 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.155 1.155 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.154 0.846 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.353 -10.511 -31.208 34.233 hybrid contribution -0.273 -1.002 1.201 1.588 sum 9.080 -11.513 -30.008 33.398 Atomic orbital electron populations 1.21604 0.92321 1.02955 1.01259 1.19967 0.97170 0.98645 0.89534 0.92627 1.26566 0.90679 0.99409 0.92588 1.74593 1.12919 1.26067 0.95988 1.46549 1.50605 1.14574 1.19669 1.19968 0.77844 0.86610 0.82940 1.90766 1.56230 1.18492 1.75523 1.22873 0.97663 0.90047 0.90656 0.83951 1.23711 0.97751 0.96084 0.86412 1.86332 1.79822 1.32795 1.22667 1.19241 1.01044 0.89347 0.92238 1.20828 0.97182 1.02251 0.93258 1.21398 0.99729 0.93260 0.98290 1.21337 0.96943 0.96300 0.98099 1.20767 1.01122 1.00588 0.92094 1.19322 0.97995 0.93100 0.91531 1.86346 1.60441 1.33763 1.41914 1.19526 0.95882 0.96699 0.91649 1.21394 1.34584 1.08802 0.90997 0.94417 1.25999 0.97000 1.01045 0.95533 1.70073 1.48998 1.41616 0.98761 0.85719 0.78659 0.80090 0.78517 1.20340 1.21420 1.15524 0.93263 0.92292 0.90672 0.83159 0.75113 0.90684 0.81725 0.82901 0.81586 0.82025 0.84598 0.93904 0.96955 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.99 71.98 0.65 -3.24 16 2 C -0.03 -1.14 2.75 -11.54 -0.03 -1.17 16 3 H 0.06 2.31 8.11 -2.39 -0.02 2.29 16 4 C 0.12 3.34 9.66 88.66 0.86 4.20 16 5 N -0.29 -9.23 10.92 -50.46 -0.55 -9.78 16 6 N -0.57 -13.10 6.24 -173.52 -1.08 -14.18 16 7 C 0.54 14.82 7.31 87.66 0.64 15.46 16 8 O -0.54 -21.33 16.86 15.76 0.27 -21.07 16 9 C 0.05 0.98 3.44 30.01 0.10 1.08 16 10 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 11 C 0.04 0.57 6.53 72.14 0.47 1.04 16 12 O -0.30 -5.42 10.42 -82.49 -0.86 -6.28 16 13 C 0.03 0.50 6.49 22.56 0.15 0.65 16 14 C -0.12 -1.63 9.96 22.37 0.22 -1.41 16 15 C -0.11 -1.13 10.04 22.26 0.22 -0.90 16 16 C -0.11 -1.30 10.04 22.26 0.22 -1.07 16 17 C -0.13 -2.32 9.96 22.37 0.22 -2.10 16 18 C 0.02 0.56 6.49 22.56 0.15 0.70 16 19 O -0.31 -8.23 9.62 -68.96 -0.66 -8.89 16 20 C 0.00 0.04 3.50 29.85 0.10 0.14 16 21 C -0.52 -28.45 8.96 25.60 0.23 -28.22 16 22 H 0.04 2.29 7.30 -2.91 -0.02 2.27 16 23 C 0.00 0.03 5.47 84.65 0.46 0.49 16 24 N -0.95 -59.02 13.96 21.45 0.30 -58.73 16 25 Si 0.95 42.41 27.47 68.60 1.88 44.30 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.23 -9.07 6.54 99.48 0.65 -8.42 16 29 H 0.05 1.85 6.95 -2.39 -0.02 1.84 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.15 2.69 8.00 -2.91 -0.02 2.67 16 33 H 0.41 5.02 8.58 -213.33 -1.83 3.19 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.17 1.23 8.09 -2.39 -0.02 1.21 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.04 1.65 7.20 -2.39 -0.02 1.64 16 41 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -82.03 360.73 3.12 -78.92 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -0.84 Total: 10.07 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 4.67 Total: -14.35 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.33 Total: -82.69 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.26 Total: -36.24 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.30 kcal Total: -82.03 3.12 -78.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.264 kcal (2) G-P(sol) polarization free energy of solvation -82.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds