Wall clock time and date at job start Tue Mar 31 2020 12:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47410 * 2 1 4 4 C 1.50707 * 109.46747 * 119.99899 * 2 1 3 5 5 N 1.28008 * 119.99490 * 239.99356 * 4 2 1 6 6 N 1.40101 * 119.99630 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00244 * 180.02562 * 6 5 4 8 8 O 1.21303 * 120.00079 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00046 * 179.72971 * 7 6 5 10 10 H 1.08996 * 109.70539 * 55.27779 * 9 7 6 11 11 C 1.53474 * 109.71077 * 294.69067 * 9 7 6 12 12 O 1.43175 * 108.24091 * 180.57795 * 11 9 7 13 13 C 1.36112 * 116.70349 * 46.23603 * 12 11 9 14 14 C 1.38696 * 119.39542 * 162.73810 * 13 12 11 15 15 C 1.38196 * 120.06543 * 179.84354 * 14 13 12 16 16 C 1.38259 * 120.11053 * 0.03309 * 15 14 13 17 17 C 1.38192 * 120.11532 * 0.05721 * 16 15 14 18 18 C 1.38703 * 120.06421 * 359.95499 * 17 16 15 19 19 O 1.36126 * 119.38156 * 179.76239 * 18 17 16 20 20 C 1.53001 * 109.47190 * 239.99826 * 2 1 3 21 21 C 1.50698 * 109.46732 * 65.00323 * 20 2 1 22 22 H 1.07998 * 120.00767 * 0.02562 * 21 20 2 23 23 C 1.37878 * 119.99481 * 180.02562 * 21 20 2 24 24 N 1.31509 * 120.00487 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99879 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47273 * 89.99624 * 25 23 21 27 27 H 1.48498 * 109.47140 * 209.99840 * 25 23 21 28 28 H 1.48503 * 109.46743 * 329.99484 * 25 23 21 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47475 * 300.00312 * 1 2 3 31 31 H 1.09003 * 109.46939 * 59.99935 * 1 2 3 32 32 H 1.07992 * 119.99760 * 60.00446 * 4 2 1 33 33 H 0.97001 * 119.99642 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.71072 * 300.27029 * 11 9 7 35 35 H 1.09001 * 109.70599 * 60.85063 * 11 9 7 36 36 H 1.07995 * 119.97050 * 359.86964 * 14 13 12 37 37 H 1.07995 * 119.94550 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.93940 * 180.02562 * 16 15 14 39 39 H 1.07994 * 119.96862 * 179.97438 * 17 16 15 40 40 H 1.09005 * 109.47021 * 185.00339 * 20 2 1 41 41 H 1.09000 * 109.47090 * 305.00447 * 20 2 1 42 42 H 0.97007 * 120.00448 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.7682 -0.0883 2.0731 6 7 3.2347 -0.7485 3.2173 7 6 4.0092 -0.0935 4.1047 8 8 4.3020 1.0680 3.9129 9 6 4.5059 -0.8019 5.3386 10 1 5.0395 -1.7082 5.0523 11 6 3.3185 -1.1636 6.2411 12 8 3.8260 -1.8214 7.4072 13 6 4.8985 -1.2457 8.0162 14 6 5.2146 -1.6027 9.3186 15 6 6.3025 -1.0293 9.9491 16 6 7.0781 -0.0979 9.2839 17 6 6.7676 0.2637 7.9868 18 6 5.6769 -0.3079 7.3484 19 8 5.3807 0.0620 6.0722 20 6 2.0400 -0.7213 -1.2492 21 6 1.6413 0.0571 -2.4765 22 1 1.0807 0.9746 -2.3757 23 6 1.9924 -0.4023 -3.7282 24 7 2.6755 -1.5193 -3.8511 25 14 1.4989 0.5629 -5.2496 26 1 2.5650 1.5416 -5.5824 27 1 1.3111 -0.3709 -6.3889 28 1 0.2282 1.2851 -4.9870 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7713 -1.7443 1.4014 33 1 3.0002 -1.6772 3.3708 34 1 2.7882 -0.2568 6.5320 35 1 2.6411 -1.8304 5.7077 36 1 4.6103 -2.3299 9.8404 37 1 6.5471 -1.3091 10.9631 38 1 7.9279 0.3482 9.7792 39 1 7.3748 0.9917 7.4696 40 1 3.1263 -0.7995 -1.2055 41 1 1.6053 -1.7198 -1.2951 42 1 2.9228 -1.8423 -4.7318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765994248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:54 Heat of formation + Delta-G solvation = -44.080293 kcal Electronic energy + Delta-G solvation = -25118.667973 eV Core-core repulsion = 21258.577782 eV Total energy + Delta-G solvation = -3860.090191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82989 -39.66946 -37.97019 -37.68959 -36.95607 -34.89974 -32.82357 -32.03390 -31.03836 -30.54669 -28.81998 -27.03657 -25.81682 -24.31902 -23.23807 -22.47150 -21.50902 -20.71952 -19.43658 -19.10821 -18.14747 -17.93207 -17.07018 -16.62406 -16.20055 -15.98138 -15.60130 -15.14143 -14.94837 -14.58824 -14.48802 -14.39977 -14.23792 -13.74502 -13.48459 -13.21372 -12.83811 -12.54378 -12.32493 -12.04814 -11.77458 -11.67189 -11.56947 -11.24553 -10.99377 -10.96393 -10.81355 -10.48212 -10.23913 -10.03837 -9.80333 -9.60277 -9.14600 -9.04782 -8.68186 -8.48391 -8.40940 -6.05882 -4.07983 0.90494 0.91219 1.86315 1.92250 2.57555 2.73403 3.02018 3.30595 3.34047 3.37222 3.39763 3.68140 4.06507 4.17263 4.25331 4.42345 4.54418 4.63302 4.85488 4.90510 5.00501 5.02977 5.04790 5.17507 5.30973 5.42766 5.75130 5.77969 5.86713 5.96979 6.06308 6.08447 6.22126 6.35000 6.44399 6.71099 6.86116 6.90063 6.94857 6.99747 7.49264 7.55536 7.67630 7.91767 8.31245 8.38990 8.97089 9.56171 11.05479 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034922 B = 0.001960 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.600745 B =14280.254284 C =14576.908157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.255 5.255 6 N -0.588 5.588 7 C 0.539 3.461 8 O -0.476 6.476 9 C 0.041 3.959 10 H 0.115 0.885 11 C 0.034 3.966 12 O -0.300 6.300 13 C 0.045 3.955 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.054 3.946 19 O -0.277 6.277 20 C 0.034 3.966 21 C -0.517 4.517 22 H 0.060 0.940 23 C 0.057 3.943 24 N -0.895 5.895 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.379 0.621 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -3.753 27.055 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 H 0.100 0.900 4 C -0.099 4.099 5 N -0.057 5.057 6 N -0.330 5.330 7 C 0.322 3.678 8 O -0.345 6.345 9 C -0.021 4.021 10 H 0.132 0.868 11 C -0.042 4.042 12 O -0.214 6.214 13 C 0.000 4.000 14 C -0.130 4.130 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.128 4.128 18 C 0.009 3.991 19 O -0.190 6.190 20 C -0.005 4.005 21 C -0.555 4.555 22 H 0.078 0.922 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.217 0.783 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.161 -2.196 27.111 27.516 hybrid contribution -0.640 -1.058 -1.074 1.638 sum 3.521 -3.253 26.037 26.474 Atomic orbital electron populations 1.21675 0.94146 1.01499 1.01292 1.20441 0.95613 1.00283 0.90063 0.90031 1.26869 0.91025 0.97926 0.94051 1.74718 1.12624 1.23701 0.94654 1.46874 1.51442 1.13564 1.21142 1.19256 0.78837 0.87151 0.82541 1.90789 1.53469 1.15655 1.74555 1.22833 0.93321 0.94358 0.91618 0.86782 1.23576 0.94492 1.00529 0.85600 1.86341 1.44108 1.49787 1.41180 1.18955 0.89418 0.98095 0.93553 1.20453 0.99284 1.02227 0.91065 1.20951 0.94994 0.97348 1.00265 1.20959 1.00308 0.98167 0.93747 1.20512 0.95109 1.01772 0.95443 1.19027 0.96450 0.99044 0.84593 1.86424 1.63155 1.47137 1.22298 1.19133 0.96537 0.95572 0.89222 1.21150 1.35290 1.08473 0.90583 0.92174 1.25007 0.95142 0.95061 0.99199 1.69953 1.38706 1.21135 1.23628 0.86573 0.78993 0.79766 0.82562 1.20659 1.21297 1.19782 0.93069 0.94537 0.90610 0.87830 0.78301 0.89388 0.85376 0.84667 0.84937 0.84855 0.84428 0.96295 0.96003 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.98 37.16 0.33 -1.78 16 2 C -0.04 -0.81 2.75 -91.77 -0.25 -1.07 16 3 H 0.08 1.67 8.11 -51.93 -0.42 1.25 16 4 C 0.12 1.88 9.66 -13.87 -0.13 1.74 16 5 N -0.26 -4.43 10.93 32.67 0.36 -4.07 16 6 N -0.59 -7.88 6.22 31.22 0.19 -7.69 16 7 C 0.54 7.88 7.31 -10.99 -0.08 7.80 16 8 O -0.48 -9.40 16.86 -14.17 -0.24 -9.64 16 9 C 0.04 0.45 3.44 -27.64 -0.10 0.36 16 10 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.03 0.30 6.52 37.40 0.24 0.54 16 12 O -0.30 -3.01 10.42 -32.86 -0.34 -3.35 16 13 C 0.04 0.47 6.49 -39.14 -0.25 0.21 16 14 C -0.11 -0.93 9.96 -39.43 -0.39 -1.33 16 15 C -0.12 -0.81 10.04 -39.59 -0.40 -1.21 16 16 C -0.11 -0.83 10.04 -39.59 -0.40 -1.23 16 17 C -0.11 -1.06 9.96 -39.43 -0.39 -1.45 16 18 C 0.05 0.62 6.49 -39.14 -0.25 0.37 16 19 O -0.28 -3.73 9.62 -47.10 -0.45 -4.18 16 20 C 0.03 0.80 4.43 -27.88 -0.12 0.68 16 21 C -0.52 -13.72 8.41 -34.44 -0.29 -14.00 16 22 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 23 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 24 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 25 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 32 H 0.10 1.35 8.00 -52.49 -0.42 0.93 16 33 H 0.38 3.42 8.52 -182.60 -1.55 1.87 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.13 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -34.61 364.18 -8.77 -43.38 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.91 Total: -1.87 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.58 Total: -8.89 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 1.29 Total: -36.96 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.03 Total: -17.17 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.61 -8.77 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.702 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds