Wall clock time and date at job start Tue Mar 31 2020 12:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47410 * 2 1 4 4 C 1.50707 * 109.46747 * 119.99899 * 2 1 3 5 5 N 1.28008 * 119.99490 * 239.99356 * 4 2 1 6 6 N 1.40101 * 119.99630 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00244 * 180.02562 * 6 5 4 8 8 O 1.21303 * 120.00079 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00046 * 179.72971 * 7 6 5 10 10 H 1.08996 * 109.70539 * 55.27779 * 9 7 6 11 11 C 1.53474 * 109.71077 * 294.69067 * 9 7 6 12 12 O 1.43175 * 108.24091 * 180.57795 * 11 9 7 13 13 C 1.36112 * 116.70349 * 46.23603 * 12 11 9 14 14 C 1.38696 * 119.39542 * 162.73810 * 13 12 11 15 15 C 1.38196 * 120.06543 * 179.84354 * 14 13 12 16 16 C 1.38259 * 120.11053 * 0.03309 * 15 14 13 17 17 C 1.38192 * 120.11532 * 0.05721 * 16 15 14 18 18 C 1.38703 * 120.06421 * 359.95499 * 17 16 15 19 19 O 1.36126 * 119.38156 * 179.76239 * 18 17 16 20 20 C 1.53001 * 109.47190 * 239.99826 * 2 1 3 21 21 C 1.50698 * 109.46732 * 65.00323 * 20 2 1 22 22 H 1.07998 * 120.00767 * 0.02562 * 21 20 2 23 23 C 1.37878 * 119.99481 * 180.02562 * 21 20 2 24 24 N 1.31509 * 120.00487 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99879 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47273 * 89.99624 * 25 23 21 27 27 H 1.48498 * 109.47140 * 209.99840 * 25 23 21 28 28 H 1.48503 * 109.46743 * 329.99484 * 25 23 21 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47475 * 300.00312 * 1 2 3 31 31 H 1.09003 * 109.46939 * 59.99935 * 1 2 3 32 32 H 1.07992 * 119.99760 * 60.00446 * 4 2 1 33 33 H 0.97001 * 119.99642 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.71072 * 300.27029 * 11 9 7 35 35 H 1.09001 * 109.70599 * 60.85063 * 11 9 7 36 36 H 1.07995 * 119.97050 * 359.86964 * 14 13 12 37 37 H 1.07995 * 119.94550 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.93940 * 180.02562 * 16 15 14 39 39 H 1.07994 * 119.96862 * 179.97438 * 17 16 15 40 40 H 1.09005 * 109.47021 * 185.00339 * 20 2 1 41 41 H 1.09000 * 109.47090 * 305.00447 * 20 2 1 42 42 H 0.97007 * 120.00448 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.7682 -0.0883 2.0731 6 7 3.2347 -0.7485 3.2173 7 6 4.0092 -0.0935 4.1047 8 8 4.3020 1.0680 3.9129 9 6 4.5059 -0.8019 5.3386 10 1 5.0395 -1.7082 5.0523 11 6 3.3185 -1.1636 6.2411 12 8 3.8260 -1.8214 7.4072 13 6 4.8985 -1.2457 8.0162 14 6 5.2146 -1.6027 9.3186 15 6 6.3025 -1.0293 9.9491 16 6 7.0781 -0.0979 9.2839 17 6 6.7676 0.2637 7.9868 18 6 5.6769 -0.3079 7.3484 19 8 5.3807 0.0620 6.0722 20 6 2.0400 -0.7213 -1.2492 21 6 1.6413 0.0571 -2.4765 22 1 1.0807 0.9746 -2.3757 23 6 1.9924 -0.4023 -3.7282 24 7 2.6755 -1.5193 -3.8511 25 14 1.4989 0.5629 -5.2496 26 1 2.5650 1.5416 -5.5824 27 1 1.3111 -0.3709 -6.3889 28 1 0.2282 1.2851 -4.9870 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7713 -1.7443 1.4014 33 1 3.0002 -1.6772 3.3708 34 1 2.7882 -0.2568 6.5320 35 1 2.6411 -1.8304 5.7077 36 1 4.6103 -2.3299 9.8404 37 1 6.5471 -1.3091 10.9631 38 1 7.9279 0.3482 9.7792 39 1 7.3748 0.9917 7.4696 40 1 3.1263 -0.7995 -1.2055 41 1 1.6053 -1.7198 -1.2951 42 1 2.9228 -1.8423 -4.7318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765994248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:53 Heat of formation + Delta-G solvation = -66.403147 kcal Electronic energy + Delta-G solvation = -25119.635965 eV Core-core repulsion = 21258.577782 eV Total energy + Delta-G solvation = -3861.058182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.61781 -40.78880 -38.77206 -38.55523 -38.19081 -36.44528 -34.48666 -33.32584 -31.69016 -31.64395 -29.62198 -28.83762 -26.65930 -25.87806 -24.06539 -23.72135 -22.59980 -21.73833 -20.76620 -19.96968 -19.23047 -18.86787 -18.32460 -17.93156 -17.49562 -16.86187 -16.53019 -16.44344 -15.93858 -15.75746 -15.44445 -15.28733 -15.03759 -14.90875 -14.81756 -14.56333 -14.42633 -13.75399 -13.28895 -13.20488 -12.90327 -12.84843 -12.75372 -12.50618 -12.46042 -12.26557 -12.23669 -11.81793 -11.77443 -11.39578 -11.32420 -11.22454 -10.91255 -10.51873 -10.00866 -9.70639 -9.19050 -8.16391 -6.24417 0.24481 0.25964 0.65992 0.89084 1.43597 1.44847 1.52339 1.55356 1.88330 2.18054 2.44800 2.69526 2.88083 3.10040 3.18593 3.46598 3.50925 3.81107 3.94489 3.97578 4.09400 4.19774 4.28457 4.39385 4.43428 4.50177 4.56488 4.64026 4.79610 4.96867 5.11630 5.17968 5.21516 5.28269 5.48784 5.49290 5.53573 5.64647 5.70584 5.72491 5.86721 5.91197 6.24099 6.27284 6.35855 6.90154 7.24913 7.43656 8.95320 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034922 B = 0.001960 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.600745 B =14280.254284 C =14576.908157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.037 4.037 3 H 0.060 0.940 4 C 0.123 3.877 5 N -0.293 5.293 6 N -0.571 5.571 7 C 0.541 3.459 8 O -0.537 6.537 9 C 0.048 3.952 10 H 0.138 0.862 11 C 0.039 3.961 12 O -0.302 6.302 13 C 0.026 3.974 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.024 3.976 19 O -0.310 6.310 20 C 0.040 3.960 21 C -0.529 4.529 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.958 3.042 26 H -0.281 1.281 27 H -0.284 1.284 28 H -0.260 1.260 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.406 0.594 34 H 0.079 0.921 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.135 0.865 40 H -0.016 1.016 41 H 0.014 0.986 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -4.832 29.179 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 H 0.078 0.922 4 C -0.091 4.091 5 N -0.096 5.096 6 N -0.315 5.315 7 C 0.327 3.673 8 O -0.410 6.410 9 C -0.014 4.014 10 H 0.156 0.844 11 C -0.037 4.037 12 O -0.216 6.216 13 C -0.018 4.018 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.127 4.127 17 C -0.146 4.146 18 C -0.020 4.020 19 O -0.225 6.225 20 C 0.002 3.998 21 C -0.567 4.567 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.573 5.573 25 Si 0.783 3.217 26 H -0.207 1.207 27 H -0.209 1.209 28 H -0.184 1.184 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.153 0.847 40 H 0.002 0.998 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.363 -3.310 29.250 29.628 hybrid contribution -0.321 -0.724 -1.610 1.794 sum 3.042 -4.035 27.640 28.098 Atomic orbital electron populations 1.21593 0.91933 1.02630 1.01700 1.20158 0.97430 0.98655 0.89564 0.92191 1.26614 0.90632 0.99140 0.92749 1.74583 1.12865 1.26023 0.96084 1.46587 1.50610 1.14608 1.19703 1.19966 0.77698 0.86517 0.83156 1.90757 1.55806 1.18404 1.76065 1.22867 0.94391 0.93883 0.90249 0.84436 1.23708 0.93654 1.01203 0.85147 1.86333 1.44073 1.49894 1.41336 1.19233 0.89696 0.98428 0.94472 1.20831 0.99865 1.02420 0.90331 1.21403 0.93740 0.96006 1.01496 1.21339 1.00903 0.97738 0.92680 1.20767 0.95085 1.02131 0.96661 1.19343 0.97893 1.00628 0.84162 1.86355 1.64034 1.48506 1.23584 1.18962 0.94291 0.95478 0.91073 1.21601 1.34677 1.08681 0.91732 0.91707 1.25872 0.95292 0.96042 1.02478 1.70074 1.40124 1.22792 1.24299 0.85547 0.78985 0.78341 0.78785 1.20677 1.20949 1.18410 0.91560 0.92043 0.92249 0.84139 0.75286 0.90254 0.81751 0.82801 0.81509 0.82022 0.84701 0.99751 0.96787 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 8.98 71.98 0.65 -3.17 16 2 C -0.04 -1.40 2.75 -11.54 -0.03 -1.43 16 3 H 0.06 2.52 8.11 -2.39 -0.02 2.50 16 4 C 0.12 3.84 9.66 88.67 0.86 4.69 16 5 N -0.29 -10.06 10.93 -50.46 -0.55 -10.61 16 6 N -0.57 -14.71 6.22 -173.52 -1.08 -15.79 16 7 C 0.54 15.91 7.31 87.66 0.64 16.55 16 8 O -0.54 -22.17 16.86 15.74 0.27 -21.90 16 9 C 0.05 1.03 3.44 30.01 0.10 1.14 16 10 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 11 C 0.04 0.62 6.52 72.14 0.47 1.09 16 12 O -0.30 -5.59 10.42 -82.63 -0.86 -6.45 16 13 C 0.03 0.53 6.49 22.56 0.15 0.67 16 14 C -0.12 -1.68 9.96 22.37 0.22 -1.45 16 15 C -0.11 -1.17 10.04 22.26 0.22 -0.95 16 16 C -0.11 -1.37 10.04 22.26 0.22 -1.15 16 17 C -0.13 -2.46 9.96 22.37 0.22 -2.23 16 18 C 0.02 0.56 6.49 22.56 0.15 0.71 16 19 O -0.31 -8.67 9.62 -69.21 -0.67 -9.33 16 20 C 0.04 1.96 4.43 29.85 0.13 2.09 16 21 C -0.53 -28.42 8.41 25.60 0.22 -28.21 16 22 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 23 C 0.00 0.05 5.46 84.66 0.46 0.51 16 24 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 25 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.07 6.95 -2.39 -0.02 2.05 16 32 H 0.14 3.27 8.00 -2.91 -0.02 3.24 16 33 H 0.41 6.31 8.52 -213.32 -1.82 4.49 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.17 1.31 8.03 -2.39 -0.02 1.29 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 40 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -78.77 364.18 3.32 -75.45 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -0.78 Total: 9.05 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.68 Total: -11.14 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.35 Total: -81.08 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.26 Total: -37.69 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -78.77 3.32 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds