Wall clock time and date at job start Tue Mar 31 2020 12:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 C 1.50707 * 109.47154 * 239.99970 * 2 1 3 5 5 N 1.28010 * 119.99571 * 120.00066 * 4 2 1 6 6 N 1.40103 * 119.99440 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99791 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.47568 * 119.99940 * 180.02562 * 7 6 5 10 10 C 1.39718 * 120.09897 * 359.97438 * 9 7 6 11 11 C 1.37721 * 119.96331 * 179.79538 * 10 9 7 12 12 C 1.39017 * 120.27021 * 0.21298 * 11 10 9 13 13 C 1.39262 * 120.05136 * 359.95487 * 12 11 10 14 14 C 1.38288 * 119.95818 * 0.12224 * 13 12 11 15 15 O 1.36142 * 120.76374 * 180.20628 * 13 12 11 16 16 C 1.43171 * 116.69569 * 342.77946 * 15 13 12 17 17 C 1.53472 * 108.21731 * 46.22018 * 16 15 13 18 18 O 1.35973 * 119.23423 * 179.82585 * 12 11 10 19 19 C 1.53002 * 109.47014 * 120.00298 * 2 1 3 20 20 C 1.50698 * 109.47154 * 294.99895 * 19 2 1 21 21 H 1.07999 * 119.99809 * 0.02562 * 20 19 2 22 22 C 1.37879 * 119.99957 * 180.02562 * 20 19 2 23 23 N 1.31508 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99720 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46727 * 90.00014 * 24 22 20 26 26 H 1.48497 * 109.46916 * 209.99668 * 24 22 20 27 27 H 1.48500 * 109.47122 * 330.00075 * 24 22 20 28 28 H 1.08997 * 109.47031 * 60.00064 * 1 2 3 29 29 H 1.09008 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47383 * 299.99644 * 1 2 3 31 31 H 1.07997 * 119.99880 * 300.00042 * 4 2 1 32 32 H 0.96996 * 119.99963 * 0.02562 * 6 5 4 33 33 H 1.08002 * 120.02291 * 0.08299 * 10 9 7 34 34 H 1.07995 * 119.86789 * 180.22262 * 11 10 9 35 35 H 1.08004 * 120.02210 * 179.88403 * 14 13 12 36 36 H 1.09002 * 109.71135 * 286.54814 * 16 15 13 37 37 H 1.08994 * 109.71922 * 165.90356 * 16 15 13 38 38 H 1.09009 * 109.70294 * 180.49796 * 17 16 15 39 39 H 1.08992 * 109.74030 * 59.90257 * 17 16 15 40 40 H 1.09003 * 109.47271 * 55.00025 * 19 2 1 41 41 H 1.09000 * 109.46929 * 174.99970 * 19 2 1 42 42 H 0.97000 * 120.00235 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7683 -0.0883 -2.0731 6 7 3.2349 -0.7486 -3.2173 7 6 4.0102 -0.0937 -4.1042 8 8 4.3044 1.0705 -3.9115 9 6 4.5011 -0.7890 -5.3096 10 6 4.1640 -2.1263 -5.5333 11 6 4.6202 -2.7713 -6.6614 12 6 5.4198 -2.0984 -7.5782 13 6 5.7623 -0.7665 -7.3594 14 6 5.3087 -0.1137 -6.2278 15 8 6.5410 -0.0924 -8.2498 16 6 7.2851 -0.8842 -9.1821 17 6 6.3463 -1.9508 -9.7622 18 8 5.8615 -2.7567 -8.6830 19 6 2.0400 -0.7213 1.2492 20 6 1.6413 0.0569 2.4766 21 1 1.0800 0.9740 2.3757 22 6 1.9932 -0.4019 3.7283 23 7 2.6763 -1.5189 3.8511 24 14 1.4996 0.5632 5.2496 25 1 0.1724 0.0951 5.7237 26 1 2.5092 0.3532 6.3181 27 1 1.4247 2.0084 4.9163 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7714 -1.7444 -1.4014 32 1 2.9999 -1.6770 -3.3711 33 1 3.5421 -2.6527 -4.8244 34 1 4.3557 -3.8039 -6.8346 35 1 5.5753 0.9187 -6.0562 36 1 8.1186 -1.3667 -8.6716 37 1 7.6619 -0.2503 -9.9846 38 1 6.8918 -2.5746 -10.4704 39 1 5.5086 -1.4689 -10.2663 40 1 1.6053 -1.7199 1.2951 41 1 3.1263 -0.7995 1.2056 42 1 2.9242 -1.8415 4.7317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766009005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:42 Heat of formation + Delta-G solvation = -47.845890 kcal Electronic energy + Delta-G solvation = -24874.147511 eV Core-core repulsion = 21013.894032 eV Total energy + Delta-G solvation = -3860.253479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73028 -39.81741 -37.74251 -37.68263 -36.83495 -34.78653 -32.60212 -31.88412 -31.14284 -30.65099 -28.82517 -26.97143 -25.58168 -24.46983 -23.44401 -22.43099 -21.61534 -20.45274 -19.55042 -18.92303 -18.05744 -17.71841 -17.39900 -16.33307 -16.15662 -15.89712 -15.51119 -15.04084 -14.84498 -14.80486 -14.50192 -14.29383 -14.25496 -13.73391 -13.38342 -13.14848 -12.96606 -12.75940 -12.30673 -11.99914 -11.68105 -11.58587 -11.45704 -11.15013 -10.98064 -10.88883 -10.78726 -10.42614 -10.13780 -9.98399 -9.68881 -9.51403 -9.11506 -9.08247 -8.62665 -8.44274 -8.36122 -6.01161 -4.02911 0.42810 0.87383 2.21505 2.42155 2.57462 2.82385 2.93322 3.33220 3.40036 3.43873 3.59890 3.67715 4.11557 4.27882 4.34573 4.42946 4.47064 4.58731 4.69161 4.88887 4.90531 4.96378 5.18951 5.29351 5.35490 5.38768 5.61851 5.68292 5.86591 5.96102 6.01685 6.08554 6.16767 6.37920 6.47275 6.80149 6.90583 6.96025 6.97312 7.23023 7.61713 7.66882 7.80207 7.97015 8.37523 8.60026 9.02302 9.60875 11.10276 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.001914 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.679240 B =14629.143466 C =14713.838920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 H 0.081 0.919 4 C 0.110 3.890 5 N -0.255 5.255 6 N -0.587 5.587 7 C 0.578 3.422 8 O -0.504 6.504 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.119 4.119 12 C 0.075 3.925 13 C 0.042 3.958 14 C -0.049 4.049 15 O -0.303 6.303 16 C 0.019 3.981 17 C 0.019 3.981 18 O -0.304 6.304 19 C 0.033 3.967 20 C -0.515 4.515 21 H 0.060 0.940 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.378 0.622 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -5.332 -28.845 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 H 0.099 0.901 4 C -0.105 4.105 5 N -0.057 5.057 6 N -0.328 5.328 7 C 0.365 3.635 8 O -0.377 6.377 9 C -0.129 4.129 10 C -0.099 4.099 11 C -0.138 4.138 12 C 0.029 3.971 13 C -0.003 4.003 14 C -0.068 4.068 15 O -0.218 6.218 16 C -0.056 4.056 17 C -0.056 4.056 18 O -0.218 6.218 19 C -0.005 4.005 20 C -0.554 4.554 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.217 0.783 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.282 -3.793 -29.001 29.915 hybrid contribution -0.433 -1.096 0.615 1.329 sum 5.849 -4.889 -28.386 29.392 Atomic orbital electron populations 1.21673 0.94297 1.01428 1.01198 1.20406 0.95512 1.00234 0.90176 0.90100 1.26784 0.91605 0.97827 0.94270 1.74620 1.12191 1.24067 0.94798 1.46939 1.51375 1.13557 1.20967 1.17696 0.77892 0.86292 0.81572 1.90808 1.55540 1.15940 1.75405 1.19544 1.02625 0.94493 0.96212 1.21086 0.98836 0.93145 0.96851 1.20337 0.98245 1.01217 0.93959 1.19161 0.97562 0.91060 0.89295 1.18678 0.97791 0.91145 0.92655 1.20455 0.95738 1.01386 0.89270 1.86369 1.57545 1.33701 1.44160 1.23672 0.93719 0.94945 0.93277 1.23699 0.98797 0.94721 0.88425 1.86289 1.77691 1.34230 1.23594 1.19129 0.96548 0.95539 0.89267 1.21166 1.35079 1.08494 0.90619 0.92194 1.25008 0.95169 0.95100 0.99172 1.69955 1.38744 1.21222 1.23550 0.86582 0.78154 0.80491 0.82723 1.20692 1.21320 1.19782 0.94550 0.93130 0.90721 0.88083 0.78338 0.84543 0.83894 0.83066 0.90224 0.85756 0.85778 0.90142 0.96059 0.96279 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.98 37.16 0.33 -1.87 16 2 C -0.04 -0.83 2.75 -91.77 -0.25 -1.09 16 3 H 0.08 1.72 8.11 -51.93 -0.42 1.30 16 4 C 0.11 1.90 9.66 -13.87 -0.13 1.76 16 5 N -0.26 -4.75 10.93 32.67 0.36 -4.39 16 6 N -0.59 -8.89 6.20 30.47 0.19 -8.70 16 7 C 0.58 9.24 7.88 -12.45 -0.10 9.14 16 8 O -0.50 -10.14 16.68 5.27 0.09 -10.06 16 9 C -0.12 -1.52 5.87 -105.00 -0.62 -2.14 16 10 C -0.08 -0.74 9.53 -39.22 -0.37 -1.12 16 11 C -0.12 -1.03 9.94 -39.48 -0.39 -1.43 16 12 C 0.07 0.73 6.51 -38.91 -0.25 0.48 16 13 C 0.04 0.46 6.48 -39.18 -0.25 0.20 16 14 C -0.05 -0.60 9.50 -39.02 -0.37 -0.97 16 15 O -0.30 -2.96 10.42 -32.94 -0.34 -3.30 16 16 C 0.02 0.11 7.26 37.40 0.27 0.38 16 17 C 0.02 0.09 7.26 37.40 0.27 0.36 16 18 O -0.30 -2.57 10.41 -32.40 -0.34 -2.91 16 19 C 0.03 0.82 4.43 -27.88 -0.12 0.69 16 20 C -0.52 -13.92 8.41 -34.44 -0.29 -14.21 16 21 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 22 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 24 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 31 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 32 H 0.38 4.18 6.65 -182.60 -1.21 2.97 16 33 H 0.14 0.91 6.39 -52.49 -0.34 0.58 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.15 1.92 7.64 -52.48 -0.40 1.52 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.12 0.23 8.14 -51.92 -0.42 -0.19 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -35.09 360.99 -7.73 -42.82 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.46 Total: -1.34 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.38 Total: -8.31 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.28 Total: -38.64 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.59 Total: -16.27 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.09 -7.73 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766009005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.021 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds