Wall clock time and date at job start Tue Mar 31 2020 12:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 C 1.50707 * 109.47154 * 239.99970 * 2 1 3 5 5 N 1.28010 * 119.99571 * 120.00066 * 4 2 1 6 6 N 1.40103 * 119.99440 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99791 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.47568 * 119.99940 * 180.02562 * 7 6 5 10 10 C 1.39718 * 120.09897 * 359.97438 * 9 7 6 11 11 C 1.37721 * 119.96331 * 179.79538 * 10 9 7 12 12 C 1.39017 * 120.27021 * 0.21298 * 11 10 9 13 13 C 1.39262 * 120.05136 * 359.95487 * 12 11 10 14 14 C 1.38288 * 119.95818 * 0.12224 * 13 12 11 15 15 O 1.36142 * 120.76374 * 180.20628 * 13 12 11 16 16 C 1.43171 * 116.69569 * 342.77946 * 15 13 12 17 17 C 1.53472 * 108.21731 * 46.22018 * 16 15 13 18 18 O 1.35973 * 119.23423 * 179.82585 * 12 11 10 19 19 C 1.53002 * 109.47014 * 120.00298 * 2 1 3 20 20 C 1.50698 * 109.47154 * 294.99895 * 19 2 1 21 21 H 1.07999 * 119.99809 * 0.02562 * 20 19 2 22 22 C 1.37879 * 119.99957 * 180.02562 * 20 19 2 23 23 N 1.31508 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99720 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46727 * 90.00014 * 24 22 20 26 26 H 1.48497 * 109.46916 * 209.99668 * 24 22 20 27 27 H 1.48500 * 109.47122 * 330.00075 * 24 22 20 28 28 H 1.08997 * 109.47031 * 60.00064 * 1 2 3 29 29 H 1.09008 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47383 * 299.99644 * 1 2 3 31 31 H 1.07997 * 119.99880 * 300.00042 * 4 2 1 32 32 H 0.96996 * 119.99963 * 0.02562 * 6 5 4 33 33 H 1.08002 * 120.02291 * 0.08299 * 10 9 7 34 34 H 1.07995 * 119.86789 * 180.22262 * 11 10 9 35 35 H 1.08004 * 120.02210 * 179.88403 * 14 13 12 36 36 H 1.09002 * 109.71135 * 286.54814 * 16 15 13 37 37 H 1.08994 * 109.71922 * 165.90356 * 16 15 13 38 38 H 1.09009 * 109.70294 * 180.49796 * 17 16 15 39 39 H 1.08992 * 109.74030 * 59.90257 * 17 16 15 40 40 H 1.09003 * 109.47271 * 55.00025 * 19 2 1 41 41 H 1.09000 * 109.46929 * 174.99970 * 19 2 1 42 42 H 0.97000 * 120.00235 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7683 -0.0883 -2.0731 6 7 3.2349 -0.7486 -3.2173 7 6 4.0102 -0.0937 -4.1042 8 8 4.3044 1.0705 -3.9115 9 6 4.5011 -0.7890 -5.3096 10 6 4.1640 -2.1263 -5.5333 11 6 4.6202 -2.7713 -6.6614 12 6 5.4198 -2.0984 -7.5782 13 6 5.7623 -0.7665 -7.3594 14 6 5.3087 -0.1137 -6.2278 15 8 6.5410 -0.0924 -8.2498 16 6 7.2851 -0.8842 -9.1821 17 6 6.3463 -1.9508 -9.7622 18 8 5.8615 -2.7567 -8.6830 19 6 2.0400 -0.7213 1.2492 20 6 1.6413 0.0569 2.4766 21 1 1.0800 0.9740 2.3757 22 6 1.9932 -0.4019 3.7283 23 7 2.6763 -1.5189 3.8511 24 14 1.4996 0.5632 5.2496 25 1 0.1724 0.0951 5.7237 26 1 2.5092 0.3532 6.3181 27 1 1.4247 2.0084 4.9163 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7714 -1.7444 -1.4014 32 1 2.9999 -1.6770 -3.3711 33 1 3.5421 -2.6527 -4.8244 34 1 4.3557 -3.8039 -6.8346 35 1 5.5753 0.9187 -6.0562 36 1 8.1186 -1.3667 -8.6716 37 1 7.6619 -0.2503 -9.9846 38 1 6.8918 -2.5746 -10.4704 39 1 5.5086 -1.4689 -10.2663 40 1 1.6053 -1.7199 1.2951 41 1 3.1263 -0.7995 1.2056 42 1 2.9242 -1.8415 4.7317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766009005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:41 Heat of formation + Delta-G solvation = -71.543653 kcal Electronic energy + Delta-G solvation = -24875.175123 eV Core-core repulsion = 21013.894032 eV Total energy + Delta-G solvation = -3861.281091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40469 -40.96409 -38.71067 -38.38893 -38.13567 -36.39870 -34.40272 -32.98302 -31.91352 -31.71314 -29.60545 -28.81496 -26.37555 -25.87508 -24.62686 -23.41079 -22.89739 -21.49446 -20.76733 -19.89476 -19.02507 -18.73911 -18.35448 -18.06239 -17.26518 -16.61268 -16.50332 -16.21137 -16.18687 -15.79818 -15.48022 -15.09406 -15.00366 -14.87503 -14.79969 -14.51679 -14.39407 -13.77542 -13.60490 -13.23519 -12.97490 -12.79977 -12.72598 -12.49990 -12.30338 -12.23379 -12.05198 -11.76793 -11.60279 -11.42660 -11.28285 -11.23406 -10.89300 -10.49737 -9.97381 -9.83126 -9.29463 -8.14561 -6.22634 -0.45153 0.11775 0.95509 1.36285 1.44743 1.46059 1.56514 1.74705 2.00290 2.17642 2.46272 2.63369 3.13183 3.20126 3.38043 3.55622 3.84439 3.89543 3.92860 3.98079 4.03085 4.06519 4.23287 4.46353 4.51309 4.56373 4.59185 4.65542 4.70005 4.86231 4.93399 5.01325 5.08505 5.23507 5.29228 5.32277 5.50408 5.55715 5.74925 5.76505 5.88939 6.07009 6.24000 6.29410 6.49152 6.91825 7.37348 7.45240 8.97264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032677 B = 0.001914 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.679240 B =14629.143466 C =14713.838920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 H 0.059 0.941 4 C 0.116 3.884 5 N -0.293 5.293 6 N -0.575 5.575 7 C 0.577 3.423 8 O -0.558 6.558 9 C -0.140 4.140 10 C -0.067 4.067 11 C -0.115 4.115 12 C 0.080 3.920 13 C 0.035 3.965 14 C -0.067 4.067 15 O -0.324 6.324 16 C 0.011 3.989 17 C 0.014 3.986 18 O -0.310 6.310 19 C 0.041 3.959 20 C -0.529 4.529 21 H 0.065 0.935 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.959 3.041 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.267 1.267 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.401 0.599 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.085 0.915 40 H 0.013 0.987 41 H -0.016 1.016 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -7.012 -30.688 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 H 0.078 0.922 4 C -0.098 4.098 5 N -0.095 5.095 6 N -0.318 5.318 7 C 0.367 3.633 8 O -0.436 6.436 9 C -0.145 4.145 10 C -0.085 4.085 11 C -0.133 4.133 12 C 0.033 3.967 13 C -0.010 4.010 14 C -0.086 4.086 15 O -0.240 6.240 16 C -0.064 4.064 17 C -0.060 4.060 18 O -0.224 6.224 19 C 0.002 3.998 20 C -0.567 4.567 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.784 3.216 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.191 1.191 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.243 0.757 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.103 0.897 40 H 0.031 0.969 41 H 0.002 0.998 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.518 -5.503 -30.867 31.835 hybrid contribution -0.094 -0.616 0.998 1.177 sum 5.424 -6.119 -29.868 30.967 Atomic orbital electron populations 1.21593 0.92005 1.02578 1.01661 1.20142 0.97386 0.98599 0.89585 0.92244 1.26573 0.91170 0.99029 0.93027 1.74494 1.12529 1.26312 0.96180 1.46712 1.50829 1.14501 1.19729 1.18348 0.76978 0.85826 0.82196 1.90770 1.57656 1.18392 1.76764 1.19273 1.04356 0.95801 0.95072 1.21339 0.98194 0.91588 0.97430 1.20690 0.97226 1.02356 0.93031 1.19369 0.96910 0.90484 0.89924 1.18665 0.98161 0.91704 0.92486 1.20386 0.96846 1.00899 0.90510 1.86338 1.57788 1.35186 1.44659 1.24053 0.93443 0.95604 0.93268 1.24049 0.99151 0.95044 0.87783 1.86285 1.77436 1.34973 1.23743 1.18957 0.94279 0.95444 0.91080 1.21600 1.34601 1.08735 0.91733 0.91726 1.25884 0.95263 0.96089 1.02493 1.70079 1.40094 1.22863 1.24278 0.85530 0.78065 0.79217 0.78739 1.19471 1.21368 1.19143 0.92166 0.91620 0.92138 0.84505 0.75703 0.81693 0.80903 0.85068 0.89969 0.82743 0.82220 0.89660 0.96854 0.99765 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.98 71.98 0.65 -3.35 16 2 C -0.04 -1.43 2.75 -11.54 -0.03 -1.46 16 3 H 0.06 2.59 8.11 -2.39 -0.02 2.57 16 4 C 0.12 3.92 9.66 88.67 0.86 4.78 16 5 N -0.29 -10.91 10.93 -50.46 -0.55 -11.46 16 6 N -0.57 -17.07 6.20 -175.76 -1.09 -18.16 16 7 C 0.58 18.88 7.88 86.70 0.68 19.56 16 8 O -0.56 -23.83 16.68 -4.07 -0.07 -23.89 16 9 C -0.14 -3.45 5.87 -20.11 -0.12 -3.57 16 10 C -0.07 -1.09 9.53 22.51 0.21 -0.88 16 11 C -0.11 -1.67 9.94 22.33 0.22 -1.45 16 12 C 0.08 1.41 6.51 22.70 0.15 1.55 16 13 C 0.04 0.75 6.48 22.53 0.15 0.90 16 14 C -0.07 -1.70 9.50 22.63 0.22 -1.48 16 15 O -0.32 -6.23 10.42 -82.98 -0.86 -7.09 16 16 C 0.01 0.10 7.26 72.14 0.52 0.62 16 17 C 0.01 0.10 7.26 72.14 0.52 0.62 16 18 O -0.31 -4.41 10.41 -81.05 -0.84 -5.25 16 19 C 0.04 2.03 4.43 29.85 0.13 2.16 16 20 C -0.53 -28.91 8.41 25.60 0.22 -28.69 16 21 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 22 C 0.00 0.02 5.46 84.66 0.46 0.48 16 23 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 24 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 2.17 6.95 -2.39 -0.02 2.15 16 31 H 0.14 3.55 8.00 -2.91 -0.02 3.53 16 32 H 0.40 8.05 6.65 -213.32 -1.42 6.63 16 33 H 0.17 1.63 6.39 -2.91 -0.02 1.61 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.13 3.74 7.64 -2.91 -0.02 3.72 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.16 -0.04 8.14 -2.38 -0.02 -0.06 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -79.50 360.99 3.36 -76.13 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.37 Total: 9.32 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.84 Total: -10.20 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.36 Total: -84.92 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.78 Total: -36.24 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -79.50 3.36 -76.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766009005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.588 kcal (2) G-P(sol) polarization free energy of solvation -79.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds