Wall clock time and date at job start Tue Mar 31 2020 12:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99600 * 2 1 4 4 C 1.52999 * 109.46648 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47512 * 300.00112 * 4 3 2 6 6 C 1.47200 * 109.47353 * 60.00528 * 4 3 2 7 7 N 3.58020 * 143.44505 * 267.06163 * 2 1 3 8 8 N 1.46508 * 109.46907 * 180.02562 * 4 3 2 9 9 C 1.34771 * 119.99872 * 180.02562 * 8 4 3 10 10 O 1.21284 * 120.00332 * 0.02562 * 9 8 4 11 11 C 1.50709 * 119.99732 * 179.97438 * 9 8 4 12 12 C 1.50696 * 109.46944 * 180.02562 * 11 9 8 13 13 C 1.38311 * 119.92752 * 269.72795 * 12 11 9 14 14 C 1.38095 * 120.06534 * 179.72781 * 13 12 11 15 15 C 1.38886 * 119.93475 * 0.56950 * 14 13 12 16 16 O 1.35747 * 120.07465 * 179.68619 * 15 14 13 17 17 C 1.34823 * 117.00179 * 174.48945 * 16 15 14 18 18 H 1.08000 * 120.00517 * 5.04997 * 17 16 15 19 19 C 1.38654 * 120.00156 * 185.05449 * 17 16 15 20 20 N 1.31553 * 120.00342 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99738 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47416 * 89.99954 * 21 19 17 23 23 H 1.48509 * 109.46885 * 209.99895 * 21 19 17 24 24 H 1.48496 * 109.47203 * 329.99735 * 21 19 17 25 25 C 1.38883 * 119.85670 * 359.70316 * 15 14 13 26 26 C 1.38094 * 119.93267 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47081 * 299.99146 * 1 2 3 29 29 H 1.09000 * 109.47481 * 59.99707 * 1 2 3 30 30 H 1.09001 * 109.47040 * 60.00563 * 3 2 1 31 31 H 1.08990 * 109.47440 * 300.00274 * 3 2 1 32 32 H 1.08991 * 109.46856 * 300.00230 * 5 4 3 33 33 H 1.08996 * 109.46563 * 60.00519 * 5 4 3 34 34 H 1.09000 * 109.46465 * 180.02562 * 5 4 3 35 35 H 0.96997 * 119.99488 * 0.02562 * 8 4 3 36 36 H 1.08998 * 109.47324 * 300.00609 * 11 9 8 37 37 H 1.09001 * 109.46882 * 60.00544 * 11 9 8 38 38 H 1.07995 * 119.96699 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.03581 * 180.27624 * 14 13 12 40 40 H 0.97000 * 120.00401 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.03145 * 179.97438 * 25 15 14 42 42 H 1.07998 * 119.96986 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9864 0.4257 1.2502 6 6 3.9703 0.4542 -1.2010 7 7 4.3049 -0.1093 -2.1295 8 7 4.1312 2.5232 0.0013 9 6 5.4716 2.6641 0.0014 10 8 6.1845 1.6829 0.0005 11 6 6.0845 4.0409 0.0014 12 6 7.5867 3.9219 0.0009 13 6 8.2755 3.8729 1.1994 14 6 9.6516 3.7582 1.2022 15 6 10.3451 3.7041 0.0001 16 8 11.6984 3.5978 -0.0004 17 6 12.2992 3.4352 -1.1963 18 1 11.7155 3.4763 -2.1040 19 6 13.6666 3.2150 -1.2610 20 7 14.2528 3.0558 -2.4279 21 14 14.6765 3.1443 0.3090 22 1 14.7255 1.7450 0.8035 23 1 16.0558 3.6201 0.0320 24 1 14.0512 4.0118 1.3392 25 6 9.6510 3.7592 -1.2016 26 6 8.2744 3.8682 -1.1978 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.6644 0.9667 2.1399 33 1 3.5431 -0.5701 1.2500 34 1 5.0730 0.3401 1.2507 35 1 3.5610 3.3078 0.0016 36 1 5.7628 4.5818 -0.8885 37 1 5.7628 4.5817 0.8914 38 1 7.7361 3.9203 2.1338 39 1 10.1886 3.7155 2.1383 40 1 15.2094 2.9014 -2.4731 41 1 10.1875 3.7177 -2.1380 42 1 7.7340 3.9107 -2.1319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771579532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:03 Heat of formation + Delta-G solvation = -45.094107 kcal Electronic energy + Delta-G solvation = -25548.597084 eV Core-core repulsion = 21688.462931 eV Total energy + Delta-G solvation = -3860.134153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.57898 -39.19829 -38.55714 -36.98915 -36.40436 -35.14634 -32.60327 -32.15755 -30.87260 -30.21213 -27.98800 -26.99613 -26.21975 -24.90586 -23.44172 -22.09538 -21.47723 -20.19601 -18.34243 -17.86744 -17.60150 -17.18439 -16.91506 -16.22022 -15.89225 -15.43322 -14.95356 -14.74433 -14.40575 -14.03838 -13.91688 -13.78145 -13.67343 -13.61683 -13.46901 -12.89311 -12.66318 -12.58085 -12.50514 -12.35332 -12.17945 -12.12130 -11.97503 -11.63801 -11.50661 -11.28311 -10.94187 -10.73798 -10.65631 -10.31355 -10.13200 -9.81192 -9.65169 -9.35478 -8.83285 -8.21415 -7.29132 -6.38461 -4.04889 1.99392 2.18346 2.34101 2.53216 2.65510 2.99158 3.24358 3.28715 3.42531 3.51050 3.66026 4.17929 4.26525 4.36908 4.48283 4.68903 4.80200 4.83625 4.86294 4.90346 5.00048 5.12922 5.18989 5.19264 5.22781 5.39804 5.48533 5.57308 5.66686 5.76351 5.98796 6.04332 6.15748 6.35011 6.46469 6.58508 6.81427 7.02597 7.17418 7.23637 7.33254 7.48212 7.64183 7.83650 8.06908 8.08815 8.96701 9.59042 10.69196 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.002406 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.415957 B =11633.500031 C =11904.245928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.284 3.716 5 C -0.160 4.160 6 C 0.206 3.794 7 N -0.407 5.407 8 N -0.731 5.731 9 C 0.512 3.488 10 O -0.500 6.500 11 C -0.077 4.077 12 C -0.166 4.166 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.163 3.837 16 O -0.217 6.217 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.219 4.219 26 C -0.057 4.057 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.407 0.593 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.146 1.982 8.987 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.015 4.015 4 C 0.193 3.807 5 C -0.219 4.219 6 C -0.114 4.114 7 N -0.083 5.083 8 N -0.389 5.389 9 C 0.299 3.701 10 O -0.372 6.372 11 C -0.117 4.117 12 C -0.167 4.167 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.111 3.889 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.239 4.239 26 C -0.075 4.075 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.243 0.757 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.578 0.201 7.636 28.616 hybrid contribution -0.126 0.695 0.604 0.929 sum -27.705 0.896 8.239 28.918 Atomic orbital electron populations 1.22816 0.79879 1.03419 1.00324 1.87915 1.20474 1.25971 1.95498 1.22576 0.89964 0.86513 1.02399 1.17324 0.91712 0.82795 0.88827 1.22212 1.04966 1.00735 0.93953 1.28942 0.93637 0.94621 0.94247 1.81167 1.07563 1.08182 1.11342 1.46118 1.07678 1.06404 1.78695 1.21230 0.80768 0.92972 0.75117 1.90779 1.60356 1.40365 1.45671 1.20416 0.94201 0.92747 1.04341 1.18661 0.91967 1.12335 0.93737 1.20390 0.93031 0.98040 0.96359 1.20150 0.93600 1.11369 0.95961 1.19135 0.83600 0.92784 0.93413 1.83564 1.15029 1.79765 1.33834 1.20774 0.92557 1.50237 0.82862 0.87630 1.24477 0.95876 0.95566 0.98153 1.69647 1.11741 1.46682 1.23662 0.86172 0.78608 0.79328 0.82731 1.19873 1.20805 1.18354 1.21226 0.94245 1.09665 0.98722 1.20567 0.93692 0.96918 0.96331 0.89104 0.93494 0.93741 0.90305 0.91711 0.90567 0.90163 0.89234 0.75725 0.88622 0.88380 0.87083 0.86527 0.91068 0.84995 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -2.81 9.64 -35.23 -0.34 -3.15 16 3 C 0.06 0.34 4.89 37.16 0.18 0.53 16 4 C 0.28 2.50 0.84 -134.60 -0.11 2.39 16 5 C -0.16 -1.45 8.21 37.16 0.31 -1.14 16 6 C 0.21 2.81 12.39 -20.74 -0.26 2.55 16 7 N -0.41 -6.86 18.54 42.17 0.78 -6.08 16 8 N -0.73 -5.51 5.08 -50.22 -0.26 -5.77 16 9 C 0.51 6.08 7.24 -10.98 -0.08 6.00 16 10 O -0.50 -8.59 13.24 5.55 0.07 -8.52 16 11 C -0.08 -0.81 5.83 -29.03 -0.17 -0.98 16 12 C -0.17 -2.67 4.38 -104.57 -0.46 -3.13 16 13 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 14 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 15 C 0.16 3.88 6.65 -39.10 -0.26 3.62 16 16 O -0.22 -5.88 8.58 0.08 0.00 -5.88 16 17 C -0.39 -11.25 9.95 30.89 0.31 -10.95 16 18 H 0.11 3.13 5.44 -52.49 -0.29 2.85 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.98 13.96 55.48 0.77 -25.20 16 21 Si 0.91 22.15 28.62 -169.99 -4.86 17.28 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 26 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.09 1.11 6.17 -51.93 -0.32 0.79 16 35 H 0.41 1.30 8.47 -40.82 -0.35 0.95 16 36 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -37.08 365.31 -4.80 -41.88 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.43 Total: 0.48 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.05 Total: -10.55 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 1.30 Total: -37.05 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.27 Total: -17.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.08 -4.80 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771579532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.218 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds