Wall clock time and date at job start Tue Mar 31 2020 12:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99600 * 2 1 4 4 C 1.52999 * 109.46648 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47512 * 300.00112 * 4 3 2 6 6 C 1.47200 * 109.47353 * 60.00528 * 4 3 2 7 7 N 3.58020 * 143.44505 * 267.06163 * 2 1 3 8 8 N 1.46508 * 109.46907 * 180.02562 * 4 3 2 9 9 C 1.34771 * 119.99872 * 180.02562 * 8 4 3 10 10 O 1.21284 * 120.00332 * 0.02562 * 9 8 4 11 11 C 1.50709 * 119.99732 * 179.97438 * 9 8 4 12 12 C 1.50696 * 109.46944 * 180.02562 * 11 9 8 13 13 C 1.38311 * 119.92752 * 269.72795 * 12 11 9 14 14 C 1.38095 * 120.06534 * 179.72781 * 13 12 11 15 15 C 1.38886 * 119.93475 * 0.56950 * 14 13 12 16 16 O 1.35747 * 120.07465 * 179.68619 * 15 14 13 17 17 C 1.34823 * 117.00179 * 174.48945 * 16 15 14 18 18 H 1.08000 * 120.00517 * 5.04997 * 17 16 15 19 19 C 1.38654 * 120.00156 * 185.05449 * 17 16 15 20 20 N 1.31553 * 120.00342 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99738 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47416 * 89.99954 * 21 19 17 23 23 H 1.48509 * 109.46885 * 209.99895 * 21 19 17 24 24 H 1.48496 * 109.47203 * 329.99735 * 21 19 17 25 25 C 1.38883 * 119.85670 * 359.70316 * 15 14 13 26 26 C 1.38094 * 119.93267 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47081 * 299.99146 * 1 2 3 29 29 H 1.09000 * 109.47481 * 59.99707 * 1 2 3 30 30 H 1.09001 * 109.47040 * 60.00563 * 3 2 1 31 31 H 1.08990 * 109.47440 * 300.00274 * 3 2 1 32 32 H 1.08991 * 109.46856 * 300.00230 * 5 4 3 33 33 H 1.08996 * 109.46563 * 60.00519 * 5 4 3 34 34 H 1.09000 * 109.46465 * 180.02562 * 5 4 3 35 35 H 0.96997 * 119.99488 * 0.02562 * 8 4 3 36 36 H 1.08998 * 109.47324 * 300.00609 * 11 9 8 37 37 H 1.09001 * 109.46882 * 60.00544 * 11 9 8 38 38 H 1.07995 * 119.96699 * 359.97438 * 13 12 11 39 39 H 1.07998 * 120.03581 * 180.27624 * 14 13 12 40 40 H 0.97000 * 120.00401 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.03145 * 179.97438 * 25 15 14 42 42 H 1.07998 * 119.96986 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9864 0.4257 1.2502 6 6 3.9703 0.4542 -1.2010 7 7 4.3049 -0.1093 -2.1295 8 7 4.1312 2.5232 0.0013 9 6 5.4716 2.6641 0.0014 10 8 6.1845 1.6829 0.0005 11 6 6.0845 4.0409 0.0014 12 6 7.5867 3.9219 0.0009 13 6 8.2755 3.8729 1.1994 14 6 9.6516 3.7582 1.2022 15 6 10.3451 3.7041 0.0001 16 8 11.6984 3.5978 -0.0004 17 6 12.2992 3.4352 -1.1963 18 1 11.7155 3.4763 -2.1040 19 6 13.6666 3.2150 -1.2610 20 7 14.2528 3.0558 -2.4279 21 14 14.6765 3.1443 0.3090 22 1 14.7255 1.7450 0.8035 23 1 16.0558 3.6201 0.0320 24 1 14.0512 4.0118 1.3392 25 6 9.6510 3.7592 -1.2016 26 6 8.2744 3.8682 -1.1978 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.6644 0.9667 2.1399 33 1 3.5431 -0.5701 1.2500 34 1 5.0730 0.3401 1.2507 35 1 3.5610 3.3078 0.0016 36 1 5.7628 4.5818 -0.8885 37 1 5.7628 4.5817 0.8914 38 1 7.7361 3.9203 2.1338 39 1 10.1886 3.7155 2.1383 40 1 15.2094 2.9014 -2.4731 41 1 10.1875 3.7177 -2.1380 42 1 7.7340 3.9107 -2.1319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771579532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:02 Heat of formation + Delta-G solvation = -73.590411 kcal Electronic energy + Delta-G solvation = -25549.832777 eV Core-core repulsion = 21688.462931 eV Total energy + Delta-G solvation = -3861.369845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48692 -40.76750 -39.33220 -38.32732 -37.54994 -36.09615 -34.53961 -33.38290 -31.94482 -31.76573 -28.44973 -28.36751 -26.99148 -26.46292 -24.19170 -23.70887 -22.71518 -21.41199 -19.82931 -19.18865 -19.08064 -18.31498 -17.39795 -16.79755 -16.71585 -16.53093 -16.29102 -16.00347 -15.70514 -15.58340 -15.43768 -15.16880 -14.80491 -14.54664 -14.42232 -14.34355 -14.20792 -14.07318 -13.77400 -13.26648 -13.06978 -13.02004 -12.81273 -12.65900 -12.57985 -12.50275 -12.37601 -12.30065 -12.04860 -11.92939 -11.28850 -10.95756 -10.77613 -10.64541 -10.45330 -9.77644 -8.97788 -8.52073 -6.24913 0.59607 0.61038 1.28610 1.31922 1.35838 1.50282 1.63867 1.69272 2.16928 2.26491 2.75305 2.77119 2.99297 3.11371 3.20543 3.64789 3.78906 3.88254 4.04823 4.16252 4.22300 4.44471 4.49440 4.52331 4.58808 4.60404 4.68516 4.75389 4.75681 4.82208 4.85251 4.97443 5.00323 5.25829 5.29440 5.31033 5.38188 5.56880 5.74796 5.79797 5.91260 6.14550 6.26175 6.45666 6.57226 6.81951 7.29279 7.57024 8.59934 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.002406 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.415957 B =11633.500031 C =11904.245928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.067 3.933 4 C 0.280 3.720 5 C -0.156 4.156 6 C 0.224 3.776 7 N -0.480 5.480 8 N -0.702 5.702 9 C 0.513 3.487 10 O -0.562 6.562 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.053 4.053 14 C -0.194 4.194 15 C 0.116 3.884 16 O -0.246 6.246 17 C -0.400 4.400 18 H 0.075 0.925 19 C 0.006 3.994 20 N -0.925 5.925 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.243 4.243 26 C -0.068 4.068 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.434 0.566 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.129 0.871 40 H 0.285 0.715 41 H 0.100 0.900 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.612 3.873 12.400 36.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.011 4.011 4 C 0.189 3.811 5 C -0.215 4.215 6 C -0.095 4.095 7 N -0.157 5.157 8 N -0.361 5.361 9 C 0.301 3.699 10 O -0.439 6.439 11 C -0.115 4.115 12 C -0.138 4.138 13 C -0.071 4.071 14 C -0.213 4.213 15 C 0.067 3.933 16 O -0.154 6.154 17 C -0.476 4.476 18 H 0.093 0.907 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.262 4.262 26 C -0.087 4.087 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.275 0.725 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.181 0.819 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -32.156 2.144 11.055 34.070 hybrid contribution 0.797 0.122 -0.420 0.909 sum -31.359 2.266 10.634 33.190 Atomic orbital electron populations 1.22964 0.78294 1.03864 1.01705 1.87873 1.22248 1.27312 1.95832 1.22723 0.86710 0.86384 1.05286 1.17736 0.94305 0.82627 0.86396 1.22175 1.02528 1.01370 0.95398 1.30087 0.91678 0.93458 0.94299 1.81171 1.10056 1.10458 1.13973 1.45741 1.06631 1.07061 1.76699 1.21393 0.81784 0.92535 0.74175 1.90807 1.62062 1.42254 1.48749 1.20587 0.89444 0.92800 1.08622 1.19333 0.95564 1.06744 0.92184 1.21013 0.91654 0.95576 0.98835 1.20563 0.95329 1.10390 0.94976 1.19734 0.82900 0.95261 0.95381 1.83498 1.16828 1.82789 1.32255 1.20684 0.93023 1.50840 0.83091 0.90697 1.25357 0.96836 0.95361 1.01666 1.69738 1.12367 1.48875 1.25660 0.85158 0.77442 0.79393 0.78317 1.19335 1.18873 1.18370 1.21231 0.96224 1.11440 0.97346 1.20902 0.92139 0.96756 0.98857 0.89348 0.91253 0.93118 0.85916 0.90200 0.87038 0.90650 0.92804 0.72494 0.85421 0.83062 0.81941 0.85267 0.90562 0.88236 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.41 -4.86 9.64 -148.98 -1.44 -6.29 16 3 C 0.07 0.40 4.89 71.98 0.35 0.76 16 4 C 0.28 3.98 0.84 1.80 0.00 3.98 16 5 C -0.16 -2.39 8.21 71.98 0.59 -1.80 16 6 C 0.22 5.90 12.39 89.44 1.11 7.01 16 7 N -0.48 -16.53 18.54 20.01 0.37 -16.16 16 8 N -0.70 -6.95 5.08 -431.18 -2.19 -9.14 16 9 C 0.51 9.93 7.24 87.66 0.63 10.56 16 10 O -0.56 -18.25 13.24 -3.04 -0.04 -18.29 16 11 C -0.08 -1.12 5.83 29.10 0.17 -0.95 16 12 C -0.14 -3.92 4.38 -19.83 -0.09 -4.01 16 13 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 14 C -0.19 -7.62 9.99 22.39 0.22 -7.39 16 15 C 0.12 5.76 6.65 22.58 0.15 5.91 16 16 O -0.25 -14.11 8.58 -22.63 -0.19 -14.30 16 17 C -0.40 -24.96 9.95 67.92 0.68 -24.29 16 18 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 19 C 0.01 0.35 5.49 84.83 0.47 0.81 16 20 N -0.93 -57.79 13.96 21.61 0.30 -57.49 16 21 Si 0.98 47.41 28.62 68.60 1.96 49.37 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 25 C -0.24 -11.57 9.17 22.39 0.21 -11.36 16 26 C -0.07 -2.51 9.69 22.25 0.22 -2.30 16 27 H 0.09 0.45 8.14 -2.38 -0.02 0.44 16 28 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.22 7.68 -2.39 -0.02 1.21 16 34 H 0.05 1.26 6.17 -2.39 -0.01 1.25 16 35 H 0.43 -0.29 8.47 -92.71 -0.79 -1.07 16 36 H 0.13 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.15 0.81 8.08 -2.39 -0.02 0.80 16 38 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.28 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.10 5.28 5.64 -2.91 -0.02 5.26 16 42 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -93.08 365.31 5.22 -87.86 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.27 Total: 7.49 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 6.17 Total: -23.04 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.52 Total: -82.79 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.67 Total: -38.89 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.96 Total: 49.37 kcal Total: -93.08 5.22 -87.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771579532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.271 kcal (2) G-P(sol) polarization free energy of solvation -93.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds