Wall clock time and date at job start Tue Mar 31 2020 13:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47196 * 2 1 4 4 C 1.42895 * 114.00054 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47365 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.65645 * 176.45790 * 5 4 3 7 7 C 1.51581 * 110.59990 * 53.54286 * 5 4 3 8 8 O 1.21231 * 127.15711 * 61.73874 * 7 5 4 9 9 N 1.34770 * 105.68084 * 241.47808 * 7 5 4 10 10 C 1.39608 * 124.17316 * 180.02562 * 9 7 5 11 11 C 1.39406 * 119.82170 * 173.55046 * 10 9 7 12 12 C 1.36414 * 120.16981 * 179.72170 * 11 10 9 13 13 C 1.40846 * 119.81930 * 0.57239 * 12 11 10 14 14 C 1.41179 * 120.16763 * 179.67799 * 13 12 11 15 15 H 1.08004 * 120.00072 * 208.06723 * 14 13 12 16 16 C 1.39909 * 120.00000 * 28.07093 * 14 13 12 17 17 N 1.30865 * 120.00329 * 13.67187 * 16 14 13 18 18 Si 1.86808 * 120.00165 * 193.66859 * 16 14 13 19 19 H 1.48500 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46714 * 120.00164 * 18 16 14 21 21 H 1.48500 * 109.47278 * 240.00076 * 18 16 14 22 22 C 1.40850 * 119.66278 * 359.70338 * 13 12 11 23 23 C 1.36404 * 119.82008 * 359.97438 * 22 13 12 24 24 C 1.33783 * 111.64907 * 359.97438 * 9 7 5 25 25 O 1.21529 * 123.77267 * 180.02562 * 24 9 7 26 26 N 1.34526 * 112.45693 * 0.02562 * 24 9 7 27 27 C 1.46501 * 126.68922 * 180.02562 * 26 24 9 28 28 H 1.08998 * 109.47489 * 59.99169 * 1 2 3 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46682 * 299.99736 * 1 2 3 31 31 H 1.09006 * 109.46682 * 240.00264 * 2 1 3 32 32 H 1.08989 * 109.47393 * 120.00598 * 2 1 3 33 33 H 1.09001 * 109.47502 * 59.99796 * 4 3 2 34 34 H 1.09008 * 109.47325 * 300.00381 * 4 3 2 35 35 H 1.07995 * 119.91420 * 359.97438 * 11 10 9 36 36 H 1.07994 * 120.08573 * 180.27711 * 12 11 10 37 37 H 0.97000 * 120.00530 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.09262 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.91324 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.47392 * 359.96948 * 27 26 24 41 41 H 1.09002 * 109.47147 * 119.97904 * 27 26 24 42 42 H 1.09007 * 109.47203 * 239.97229 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 1 4.9082 3.0473 0.0627 7 6 3.1489 3.6704 1.1421 8 8 3.2808 3.4581 2.3283 9 7 2.3747 4.6103 0.5644 10 6 1.5754 5.5107 1.2711 11 6 0.9146 6.5326 0.5912 12 6 0.1273 7.4129 1.2739 13 6 -0.0072 7.2946 2.6709 14 6 -0.8147 8.2058 3.3856 15 1 -0.5929 8.4286 4.4189 16 6 -1.9024 8.8200 2.7555 17 7 -2.3368 8.3644 1.6082 18 14 -2.7348 10.2906 3.5519 19 1 -2.0583 10.6073 4.8353 20 1 -2.6452 11.4619 2.6434 21 1 -4.1621 9.9721 3.8095 22 6 0.6684 6.2628 3.3513 23 6 1.4467 5.3864 2.6536 24 6 2.4675 4.5745 -0.7697 25 8 1.8626 5.3254 -1.5094 26 7 3.3054 3.6144 -1.2010 27 6 3.6367 3.3027 -2.5935 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.8333 0.9767 -0.8908 34 1 3.8341 0.9764 0.8892 35 1 1.0229 6.6251 -0.4793 36 1 -0.3876 8.2014 0.7452 37 1 -3.0911 8.7900 1.1715 38 1 0.5705 6.1659 4.4225 39 1 1.9657 4.5950 3.1739 40 1 3.0935 3.9766 -3.2559 41 1 4.7085 3.4265 -2.7485 42 1 3.3546 2.2727 -2.8123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771828634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:47 Heat of formation + Delta-G solvation = -47.392486 kcal Electronic energy + Delta-G solvation = -27163.631264 eV Core-core repulsion = 23303.397446 eV Total energy + Delta-G solvation = -3860.233818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27143 -38.45369 -38.24575 -37.41915 -35.87806 -34.92394 -33.25109 -31.83747 -30.12653 -29.54805 -29.10733 -27.16794 -25.04954 -24.19485 -22.95637 -22.15350 -21.57112 -20.13108 -19.79089 -17.62440 -17.33089 -16.99541 -16.61142 -16.36032 -16.08917 -15.45616 -15.11560 -14.94796 -14.53560 -14.28333 -14.02956 -13.87946 -13.36847 -13.10064 -13.06817 -12.77337 -12.57939 -12.32316 -12.21592 -12.09786 -11.87187 -11.63226 -11.57305 -11.33210 -11.20975 -11.04959 -10.73123 -10.33384 -10.16221 -9.84563 -9.82233 -9.40297 -9.12906 -8.93519 -8.82540 -7.51852 -7.05196 -6.72272 -4.31883 1.91080 2.40548 2.61854 3.07184 3.09355 3.13851 3.15221 3.19506 3.40234 3.70292 3.95161 4.10807 4.52983 4.68260 4.81096 4.88488 4.96963 4.99183 5.11163 5.13962 5.19635 5.31981 5.54313 5.56369 5.71527 5.79943 5.83760 6.06356 6.18479 6.32638 6.48456 6.65457 6.91102 6.96079 7.05542 7.16858 7.25334 7.56997 7.65265 7.72449 7.92582 8.06931 8.14875 8.28998 8.56642 8.64400 8.89042 8.97939 10.21287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003545 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.353279 B = 7895.930355 C = 8154.137050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.094 3.906 6 H 0.135 0.865 7 C 0.524 3.476 8 O -0.470 6.470 9 N -0.481 5.481 10 C -0.022 4.022 11 C -0.105 4.105 12 C -0.152 4.152 13 C 0.110 3.890 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.792 5.792 18 Si 0.911 3.089 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.214 4.214 23 C -0.095 4.095 24 C 0.702 3.298 25 O -0.532 6.532 26 N -0.626 5.626 27 C 0.123 3.877 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.281 0.719 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.549 -14.309 -7.107 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.298 6.298 4 C -0.012 4.012 5 C -0.014 4.014 6 H 0.153 0.847 7 C 0.311 3.689 8 O -0.341 6.341 9 N -0.216 5.216 10 C -0.111 4.111 11 C -0.124 4.124 12 C -0.172 4.172 13 C 0.107 3.893 14 C -0.486 4.486 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.417 5.417 18 Si 0.735 3.265 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.234 4.234 23 C -0.115 4.115 24 C 0.406 3.594 25 O -0.406 6.406 26 N -0.367 5.367 27 C -0.018 4.018 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.958 -13.796 -7.161 18.460 hybrid contribution -0.300 0.243 0.242 0.456 sum 9.657 -13.554 -6.919 18.023 Atomic orbital electron populations 1.21742 0.93461 1.02085 1.03746 1.22457 0.95973 0.83214 0.99822 1.88033 1.19551 1.26885 1.95381 1.22546 0.83306 0.93407 1.01920 1.22206 1.00950 0.93280 0.84924 0.84725 1.20348 0.79308 0.80131 0.89093 1.90670 1.62357 1.66447 1.14665 1.43165 1.40110 1.31463 1.06817 1.17276 1.05823 0.97056 0.90949 1.21015 0.97051 0.94002 1.00359 1.20987 1.00699 1.00700 0.94775 1.17780 0.89348 0.89896 0.92288 1.19624 1.09288 1.20765 0.98887 0.90218 1.25947 0.96786 0.97209 0.94532 1.69839 1.21211 1.35852 1.14788 0.86223 0.79040 0.80940 0.80289 1.18391 1.19702 1.19972 1.20638 1.05935 0.98428 0.98376 1.20580 0.99525 0.99993 0.91400 1.15805 0.80196 0.81497 0.81926 1.90833 1.48455 1.43743 1.57602 1.47419 1.47670 1.35441 1.06154 1.21412 1.00693 1.01581 0.78112 0.91774 0.91108 0.91476 0.93489 0.93246 0.91515 0.90834 0.85222 0.85934 0.90812 0.88254 0.86181 0.89174 0.91848 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.24 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.38 -5.17 9.74 -35.23 -0.34 -5.51 16 4 C 0.07 0.68 5.72 37.16 0.21 0.89 16 5 C 0.09 1.16 3.86 -68.20 -0.26 0.90 16 6 H 0.14 1.15 8.14 -51.93 -0.42 0.72 16 7 C 0.52 9.43 7.04 -10.55 -0.07 9.35 16 8 O -0.47 -9.30 15.02 5.60 0.08 -9.22 16 9 N -0.48 -10.12 2.81 -64.20 -0.18 -10.30 16 10 C -0.02 -0.54 6.57 -83.45 -0.55 -1.09 16 11 C -0.10 -2.74 9.18 -39.80 -0.37 -3.10 16 12 C -0.15 -4.17 8.61 -39.25 -0.34 -4.51 16 13 C 0.11 3.03 5.55 -106.81 -0.59 2.44 16 14 C -0.46 -12.32 9.04 -37.84 -0.34 -12.66 16 15 H 0.08 2.06 7.88 -52.48 -0.41 1.64 16 16 C 0.07 1.87 5.20 -17.34 -0.09 1.78 16 17 N -0.79 -21.01 10.95 55.55 0.61 -20.40 16 18 Si 0.91 18.94 29.58 -169.99 -5.03 13.91 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C -0.21 -5.53 9.74 -39.26 -0.38 -5.92 16 23 C -0.10 -2.37 9.24 -39.81 -0.37 -2.74 16 24 C 0.70 13.64 8.22 -88.03 -0.72 12.92 16 25 O -0.53 -11.87 14.06 5.34 0.08 -11.79 16 26 N -0.63 -8.64 3.05 -180.28 -0.55 -9.19 16 27 C 0.12 1.14 11.13 59.85 0.67 1.81 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.45 8.14 -51.94 -0.42 0.02 16 33 H 0.07 0.47 7.99 -51.93 -0.42 0.06 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.13 3.37 5.14 -52.49 -0.27 3.10 16 36 H 0.12 3.45 6.27 -52.49 -0.33 3.12 16 37 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.10 2.40 8.06 -52.48 -0.42 1.97 16 39 H 0.12 2.86 5.32 -52.48 -0.28 2.58 16 40 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.46 8.02 -51.92 -0.42 0.04 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -33.48 352.36 -8.07 -41.54 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.46 Total: 5.95 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.58 Total: -0.30 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.12 Total: -39.89 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.18 Total: -26.52 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.48 -8.07 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.850 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds