Wall clock time and date at job start Tue Mar 31 2020 13:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47196 * 2 1 4 4 C 1.42895 * 114.00054 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47365 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.65645 * 176.45790 * 5 4 3 7 7 C 1.51581 * 110.59990 * 53.54286 * 5 4 3 8 8 O 1.21231 * 127.15711 * 61.73874 * 7 5 4 9 9 N 1.34770 * 105.68084 * 241.47808 * 7 5 4 10 10 C 1.39608 * 124.17316 * 180.02562 * 9 7 5 11 11 C 1.39406 * 119.82170 * 173.55046 * 10 9 7 12 12 C 1.36414 * 120.16981 * 179.72170 * 11 10 9 13 13 C 1.40846 * 119.81930 * 0.57239 * 12 11 10 14 14 C 1.41179 * 120.16763 * 179.67799 * 13 12 11 15 15 H 1.08004 * 120.00072 * 208.06723 * 14 13 12 16 16 C 1.39909 * 120.00000 * 28.07093 * 14 13 12 17 17 N 1.30865 * 120.00329 * 13.67187 * 16 14 13 18 18 Si 1.86808 * 120.00165 * 193.66859 * 16 14 13 19 19 H 1.48500 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46714 * 120.00164 * 18 16 14 21 21 H 1.48500 * 109.47278 * 240.00076 * 18 16 14 22 22 C 1.40850 * 119.66278 * 359.70338 * 13 12 11 23 23 C 1.36404 * 119.82008 * 359.97438 * 22 13 12 24 24 C 1.33783 * 111.64907 * 359.97438 * 9 7 5 25 25 O 1.21529 * 123.77267 * 180.02562 * 24 9 7 26 26 N 1.34526 * 112.45693 * 0.02562 * 24 9 7 27 27 C 1.46501 * 126.68922 * 180.02562 * 26 24 9 28 28 H 1.08998 * 109.47489 * 59.99169 * 1 2 3 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46682 * 299.99736 * 1 2 3 31 31 H 1.09006 * 109.46682 * 240.00264 * 2 1 3 32 32 H 1.08989 * 109.47393 * 120.00598 * 2 1 3 33 33 H 1.09001 * 109.47502 * 59.99796 * 4 3 2 34 34 H 1.09008 * 109.47325 * 300.00381 * 4 3 2 35 35 H 1.07995 * 119.91420 * 359.97438 * 11 10 9 36 36 H 1.07994 * 120.08573 * 180.27711 * 12 11 10 37 37 H 0.97000 * 120.00530 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.09262 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.91324 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.47392 * 359.96948 * 27 26 24 41 41 H 1.09002 * 109.47147 * 119.97904 * 27 26 24 42 42 H 1.09007 * 109.47203 * 239.97229 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 1 4.9082 3.0473 0.0627 7 6 3.1489 3.6704 1.1421 8 8 3.2808 3.4581 2.3283 9 7 2.3747 4.6103 0.5644 10 6 1.5754 5.5107 1.2711 11 6 0.9146 6.5326 0.5912 12 6 0.1273 7.4129 1.2739 13 6 -0.0072 7.2946 2.6709 14 6 -0.8147 8.2058 3.3856 15 1 -0.5929 8.4286 4.4189 16 6 -1.9024 8.8200 2.7555 17 7 -2.3368 8.3644 1.6082 18 14 -2.7348 10.2906 3.5519 19 1 -2.0583 10.6073 4.8353 20 1 -2.6452 11.4619 2.6434 21 1 -4.1621 9.9721 3.8095 22 6 0.6684 6.2628 3.3513 23 6 1.4467 5.3864 2.6536 24 6 2.4675 4.5745 -0.7697 25 8 1.8626 5.3254 -1.5094 26 7 3.3054 3.6144 -1.2010 27 6 3.6367 3.3027 -2.5935 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.8333 0.9767 -0.8908 34 1 3.8341 0.9764 0.8892 35 1 1.0229 6.6251 -0.4793 36 1 -0.3876 8.2014 0.7452 37 1 -3.0911 8.7900 1.1715 38 1 0.5705 6.1659 4.4225 39 1 1.9657 4.5950 3.1739 40 1 3.0935 3.9766 -3.2559 41 1 4.7085 3.4265 -2.7485 42 1 3.3546 2.2727 -2.8123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771828634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:46 Heat of formation + Delta-G solvation = -68.880509 kcal Electronic energy + Delta-G solvation = -27164.563054 eV Core-core repulsion = 23303.397446 eV Total energy + Delta-G solvation = -3861.165609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.67775 -39.82063 -39.71100 -38.87610 -37.26967 -36.53404 -35.07736 -32.68335 -31.70185 -31.45430 -30.48835 -28.46178 -26.68104 -25.51200 -23.77535 -23.66005 -23.28880 -21.77291 -21.36146 -19.36826 -18.92981 -18.35342 -17.81323 -17.46585 -17.25419 -17.08522 -16.68911 -16.10836 -15.86811 -15.65761 -15.43025 -15.12670 -15.06069 -14.58586 -14.24190 -14.12144 -13.93792 -13.78994 -13.58803 -13.52370 -13.13381 -12.97516 -12.92459 -12.81353 -12.61261 -12.35542 -12.17476 -11.96334 -11.94663 -11.60837 -11.20244 -10.99920 -10.64885 -10.58958 -10.02670 -9.59323 -9.03508 -8.66042 -6.37458 0.48063 0.76875 1.03557 1.13870 1.38137 1.44393 1.54952 2.00957 2.10395 2.20431 2.58283 2.73508 2.90768 3.63988 3.64539 3.85038 4.14375 4.14425 4.26661 4.35077 4.41399 4.43595 4.45714 4.48855 4.51505 4.70116 4.72052 4.79236 4.91717 4.98458 4.99132 5.10415 5.21014 5.23595 5.29341 5.42108 5.63851 5.72706 5.81034 6.01141 6.19911 6.23853 6.35410 6.42002 6.59430 6.85371 6.88303 7.10952 8.30653 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003545 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.353279 B = 7895.930355 C = 8154.137050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.059 3.941 3 O -0.424 6.424 4 C 0.064 3.936 5 C 0.108 3.892 6 H 0.188 0.812 7 C 0.513 3.487 8 O -0.494 6.494 9 N -0.502 5.502 10 C -0.015 4.015 11 C -0.115 4.115 12 C -0.170 4.170 13 C 0.082 3.918 14 C -0.489 4.489 15 H 0.084 0.916 16 C 0.031 3.969 17 N -0.827 5.827 18 Si 0.991 3.009 19 H -0.254 1.254 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.223 4.223 23 C -0.100 4.100 24 C 0.689 3.311 25 O -0.576 6.576 26 N -0.607 5.607 27 C 0.114 3.886 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.290 0.710 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.500 -16.390 -7.740 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 O -0.344 6.344 4 C -0.013 4.013 5 C 0.001 3.999 6 H 0.205 0.795 7 C 0.303 3.697 8 O -0.367 6.367 9 N -0.237 5.237 10 C -0.106 4.106 11 C -0.135 4.135 12 C -0.190 4.190 13 C 0.079 3.921 14 C -0.518 4.518 15 H 0.102 0.898 16 C -0.184 4.184 17 N -0.453 5.453 18 Si 0.811 3.189 19 H -0.178 1.178 20 H -0.189 1.189 21 H -0.189 1.189 22 C -0.243 4.243 23 C -0.119 4.119 24 C 0.393 3.607 25 O -0.453 6.453 26 N -0.346 5.346 27 C -0.025 4.025 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.973 -15.958 -7.823 21.429 hybrid contribution -0.810 0.717 0.363 1.141 sum 11.163 -15.241 -7.460 20.311 Atomic orbital electron populations 1.21791 0.94723 1.03199 1.01537 1.22605 0.95048 0.82209 1.01773 1.87995 1.21678 1.28945 1.95796 1.22835 0.82052 0.91476 1.04980 1.22582 1.02764 0.93562 0.80971 0.79536 1.21450 0.78517 0.79373 0.90320 1.90637 1.63001 1.66831 1.16221 1.43365 1.40594 1.31842 1.07883 1.17342 1.05111 0.96938 0.91232 1.21073 0.97441 0.94628 1.00320 1.20924 1.01711 1.01166 0.95156 1.18083 0.90446 0.91015 0.92552 1.19898 1.10368 1.22099 0.99405 0.89799 1.26904 0.96869 0.99737 0.94894 1.69906 1.21914 1.37247 1.16228 0.85031 0.77954 0.76608 0.79309 1.17758 1.18869 1.18928 1.20854 1.06033 0.98325 0.99126 1.20737 0.99468 1.00051 0.91682 1.16100 0.80991 0.82515 0.81128 1.90785 1.50537 1.45817 1.58199 1.47637 1.45429 1.33308 1.08259 1.21845 1.02976 1.02670 0.74985 0.93223 0.88380 0.94376 0.90498 0.92086 0.86901 0.89105 0.85499 0.87504 0.89962 0.87044 0.85065 0.90985 0.87807 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.06 1.04 6.66 71.98 0.48 1.52 16 3 O -0.42 -10.45 9.74 -148.98 -1.45 -11.90 16 4 C 0.06 0.99 5.72 71.98 0.41 1.40 16 5 C 0.11 2.22 3.86 44.37 0.17 2.39 16 6 H 0.19 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.51 17.83 7.04 87.94 0.62 18.45 16 8 O -0.49 -19.16 15.02 -2.88 -0.04 -19.20 16 9 N -0.50 -21.28 2.81 -594.30 -1.67 -22.95 16 10 C -0.02 -0.80 6.57 38.46 0.25 -0.54 16 11 C -0.12 -6.36 9.18 22.13 0.20 -6.16 16 12 C -0.17 -9.91 8.61 22.48 0.19 -9.71 16 13 C 0.08 4.75 5.55 -21.28 -0.12 4.63 16 14 C -0.49 -27.39 9.04 23.40 0.21 -27.18 16 15 H 0.08 4.46 7.88 -2.91 -0.02 4.44 16 16 C 0.03 1.60 5.20 85.24 0.44 2.05 16 17 N -0.83 -45.55 10.95 21.82 0.24 -45.31 16 18 Si 0.99 39.30 29.58 68.60 2.03 41.32 16 19 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 C -0.22 -12.04 9.74 22.48 0.22 -11.82 16 23 C -0.10 -5.13 9.24 22.12 0.20 -4.92 16 24 C 0.69 26.73 8.22 179.44 1.48 28.21 16 25 O -0.58 -26.55 14.06 -3.81 -0.05 -26.60 16 26 N -0.61 -15.03 3.05 -842.70 -2.57 -17.59 16 27 C 0.11 1.66 11.13 127.77 1.42 3.09 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.79 7.99 -2.39 -0.02 0.77 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.13 7.04 5.14 -2.91 -0.01 7.02 16 36 H 0.11 6.45 6.27 -2.91 -0.02 6.43 16 37 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 38 H 0.11 5.56 8.06 -2.91 -0.02 5.53 16 39 H 0.13 6.39 5.32 -2.91 -0.02 6.37 16 40 H 0.07 1.37 7.67 -2.39 -0.02 1.36 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.87 8.02 -2.38 -0.02 0.85 16 Total: -1.00 -80.02 352.36 4.45 -75.57 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 1.04 Total: 27.70 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.93 Total: -1.04 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -4.00 Total: -85.86 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -1.55 Total: -57.70 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.32 kcal Total: -80.02 4.45 -75.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.686 kcal (2) G-P(sol) polarization free energy of solvation -80.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds