Wall clock time and date at job start Tue Mar 31 2020 13:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47533 * 2 1 4 4 C 1.42897 * 114.00336 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47221 * 179.97438 * 4 3 2 6 6 H 1.08992 * 110.66163 * 187.91410 * 5 4 3 7 7 C 1.51586 * 110.50710 * 310.88250 * 5 4 3 8 8 O 1.21229 * 127.15981 * 298.63037 * 7 5 4 9 9 N 1.34771 * 105.68212 * 118.81576 * 7 5 4 10 10 C 1.39608 * 124.17612 * 179.74642 * 9 7 5 11 11 C 1.39404 * 119.82139 * 353.59503 * 10 9 7 12 12 C 1.36409 * 120.17127 * 179.76093 * 11 10 9 13 13 C 1.40850 * 119.81883 * 0.49334 * 12 11 10 14 14 C 1.41179 * 120.16860 * 179.78317 * 13 12 11 15 15 H 1.07996 * 119.99947 * 28.03260 * 14 13 12 16 16 C 1.39922 * 119.99952 * 208.03151 * 14 13 12 17 17 N 1.30858 * 120.00082 * 13.67102 * 16 14 13 18 18 Si 1.86798 * 120.00001 * 193.67396 * 16 14 13 19 19 H 1.48504 * 109.47169 * 89.99681 * 18 16 14 20 20 H 1.48504 * 109.47298 * 210.00081 * 18 16 14 21 21 H 1.48503 * 109.47121 * 330.00304 * 18 16 14 22 22 C 1.40851 * 119.66034 * 359.76281 * 13 12 11 23 23 C 1.36404 * 119.82420 * 359.97438 * 22 13 12 24 24 C 1.33790 * 111.64976 * 359.77774 * 9 7 5 25 25 O 1.21531 * 123.77487 * 179.97438 * 24 9 7 26 26 N 1.34531 * 112.45426 * 0.02562 * 24 9 7 27 27 C 1.46500 * 126.68855 * 179.97438 * 26 24 9 28 28 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47119 * 300.00161 * 1 2 3 30 30 H 1.08999 * 109.46760 * 60.00128 * 1 2 3 31 31 H 1.09006 * 109.47220 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.47487 * 120.00017 * 2 1 3 33 33 H 1.08998 * 109.47115 * 60.00266 * 4 3 2 34 34 H 1.08995 * 109.47128 * 299.99799 * 4 3 2 35 35 H 1.08001 * 119.91748 * 0.02562 * 11 10 9 36 36 H 1.07999 * 120.08957 * 180.25070 * 12 11 10 37 37 H 0.96997 * 120.00034 * 179.97438 * 17 16 14 38 38 H 1.08009 * 120.08789 * 180.02562 * 22 13 12 39 39 H 1.07992 * 119.91667 * 179.97438 * 23 22 13 40 40 H 1.08994 * 109.47086 * 0.02562 * 27 26 24 41 41 H 1.08998 * 109.47200 * 240.01955 * 27 26 24 42 42 H 1.09003 * 109.46649 * 120.02604 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 1 4.9007 3.0493 -0.1401 7 6 3.0651 3.6903 -1.0744 8 8 3.1031 3.4963 -2.2704 9 7 2.3411 4.6223 -0.4235 10 6 1.4961 5.5388 -1.0519 11 6 1.4654 5.6123 -2.4436 12 6 0.6389 6.5018 -3.0652 13 6 -0.1772 7.3545 -2.2967 14 6 -1.0320 8.2811 -2.9322 15 1 -1.4169 8.0718 -3.9193 16 6 -1.3806 9.4707 -2.2831 17 7 -0.7196 9.8545 -1.2210 18 14 -2.7896 10.5109 -2.9328 19 1 -4.0587 10.0807 -2.2926 20 1 -2.5360 11.9399 -2.6183 21 1 -2.8945 10.3389 -4.4041 22 6 -0.1365 7.2778 -0.8908 23 6 0.6914 6.3793 -0.2842 24 6 2.5326 4.5610 0.8992 25 8 1.9884 5.3003 1.6957 26 7 3.3959 3.5903 1.2491 27 6 3.8283 3.2513 2.6071 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8341 0.9764 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 2.0946 4.9603 -3.0314 36 1 0.6132 6.5548 -4.1436 37 1 -0.9610 10.6793 -0.7713 38 1 -0.7596 7.9281 -0.2948 39 1 0.7241 6.3195 0.7936 40 1 3.3390 3.9143 3.3204 41 1 4.9092 3.3687 2.6841 42 1 3.5586 2.2183 2.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771828635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:51 Heat of formation + Delta-G solvation = -47.401298 kcal Electronic energy + Delta-G solvation = -27143.537501 eV Core-core repulsion = 23283.303301 eV Total energy + Delta-G solvation = -3860.234200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27139 -38.46466 -38.24044 -37.41901 -35.88521 -34.92468 -33.25145 -31.85427 -30.12437 -29.54809 -29.10806 -27.17713 -25.04898 -24.20031 -22.97440 -22.14197 -21.56953 -20.14352 -19.79623 -17.61426 -17.33643 -16.98007 -16.64497 -16.36736 -16.08368 -15.45809 -15.11064 -14.96011 -14.53161 -14.26065 -14.10396 -13.85657 -13.37669 -13.06991 -13.06844 -12.81635 -12.57353 -12.33699 -12.22473 -12.10838 -11.85965 -11.65875 -11.54366 -11.35109 -11.19718 -11.08254 -10.72025 -10.34206 -10.15923 -9.86081 -9.81364 -9.40339 -9.12626 -8.94563 -8.82307 -7.51712 -7.05120 -6.72173 -4.31764 1.92112 2.40111 2.62323 3.08045 3.09784 3.12911 3.14582 3.18719 3.39302 3.70453 3.95173 4.11451 4.52179 4.68908 4.79325 4.87185 4.95897 4.98496 5.10916 5.12582 5.17949 5.31224 5.52881 5.55102 5.71810 5.77984 5.83362 6.03811 6.18685 6.32373 6.48220 6.65170 6.90989 6.94813 7.05719 7.16955 7.25514 7.57188 7.65472 7.72702 7.92722 8.07032 8.15031 8.29116 8.56498 8.64492 8.89115 8.98113 10.21442 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003533 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.806430 B = 7923.519502 C = 8325.944570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.380 6.380 4 C 0.067 3.933 5 C 0.094 3.906 6 H 0.135 0.865 7 C 0.526 3.474 8 O -0.469 6.469 9 N -0.482 5.482 10 C -0.021 4.021 11 C -0.096 4.096 12 C -0.214 4.214 13 C 0.110 3.890 14 C -0.457 4.457 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.792 5.792 18 Si 0.912 3.088 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.152 4.152 23 C -0.105 4.105 24 C 0.702 3.298 25 O -0.532 6.532 26 N -0.628 5.628 27 C 0.123 3.877 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.281 0.719 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.549 -16.573 6.249 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.014 4.014 6 H 0.153 0.847 7 C 0.313 3.687 8 O -0.340 6.340 9 N -0.216 5.216 10 C -0.111 4.111 11 C -0.115 4.115 12 C -0.234 4.234 13 C 0.107 3.893 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.145 4.145 17 N -0.417 5.417 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.172 4.172 23 C -0.124 4.124 24 C 0.405 3.595 25 O -0.406 6.406 26 N -0.368 5.368 27 C -0.018 4.018 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.161 -15.892 6.322 18.951 hybrid contribution -0.288 0.267 -0.202 0.441 sum 7.874 -15.626 6.120 18.537 Atomic orbital electron populations 1.21740 0.93484 1.02080 1.03707 1.22456 0.95960 0.83227 0.99826 1.88029 1.19602 1.26898 1.95378 1.22541 0.83263 0.93411 1.01890 1.22211 1.01327 0.93490 0.84378 0.84723 1.20312 0.79853 0.79938 0.88609 1.90668 1.63284 1.66897 1.13190 1.43165 1.40160 1.31131 1.07131 1.17274 1.02656 0.99519 0.91608 1.20576 1.00039 0.99374 0.91558 1.20635 1.01816 1.02872 0.98053 1.17776 0.89371 0.90123 0.92018 1.19599 1.24764 1.01409 1.02854 0.90252 1.25945 0.96176 0.98158 0.94179 1.69827 1.34338 1.21043 1.16512 0.86257 0.81307 0.78512 0.80306 1.19263 1.20293 1.18611 1.20990 1.01603 0.99640 0.94933 1.21012 0.95879 0.95406 1.00098 1.15814 0.80032 0.81366 0.82243 1.90833 1.52066 1.44681 1.53053 1.47450 1.47399 1.35477 1.06499 1.21415 0.99663 1.01279 0.79490 0.91115 0.91783 0.91490 0.93241 0.93494 0.90843 0.91513 0.86196 0.88251 0.90765 0.85940 0.85215 0.89149 0.91810 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.61 6.66 37.16 0.25 0.86 16 3 O -0.38 -5.10 9.67 -35.23 -0.34 -5.45 16 4 C 0.07 0.67 5.78 37.16 0.21 0.89 16 5 C 0.09 1.16 3.88 -68.20 -0.26 0.89 16 6 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.53 9.48 6.91 -10.55 -0.07 9.41 16 8 O -0.47 -9.32 15.02 5.60 0.08 -9.23 16 9 N -0.48 -10.13 2.81 -64.20 -0.18 -10.31 16 10 C -0.02 -0.53 6.57 -83.45 -0.55 -1.08 16 11 C -0.10 -2.38 9.24 -39.81 -0.37 -2.75 16 12 C -0.21 -5.53 9.74 -39.25 -0.38 -5.91 16 13 C 0.11 3.04 5.55 -106.80 -0.59 2.44 16 14 C -0.46 -12.34 9.04 -37.84 -0.34 -12.69 16 15 H 0.08 2.05 7.88 -52.49 -0.41 1.63 16 16 C 0.07 1.87 5.20 -17.34 -0.09 1.78 16 17 N -0.79 -20.98 10.95 55.55 0.61 -20.37 16 18 Si 0.91 18.96 29.58 -169.99 -5.03 13.94 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.15 -4.18 8.61 -39.26 -0.34 -4.51 16 23 C -0.10 -2.73 9.18 -39.81 -0.37 -3.10 16 24 C 0.70 13.62 8.22 -88.02 -0.72 12.90 16 25 O -0.53 -11.85 14.05 5.34 0.08 -11.78 16 26 N -0.63 -8.64 3.11 -180.28 -0.56 -9.20 16 27 C 0.12 1.13 11.06 59.85 0.66 1.79 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.47 7.73 -51.93 -0.40 0.07 16 35 H 0.12 2.85 5.32 -52.49 -0.28 2.57 16 36 H 0.10 2.40 8.06 -52.49 -0.42 1.97 16 37 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 38 H 0.12 3.45 6.27 -52.48 -0.33 3.12 16 39 H 0.13 3.38 5.14 -52.49 -0.27 3.11 16 40 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -33.44 351.79 -8.06 -41.50 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.44 Total: 5.85 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.58 Total: -0.25 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.13 Total: -39.88 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.18 Total: -26.46 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.44 -8.06 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.898 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds