Wall clock time and date at job start Tue Mar 31 2020 13:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47533 * 2 1 4 4 C 1.42897 * 114.00336 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47221 * 179.97438 * 4 3 2 6 6 H 1.08992 * 110.66163 * 187.91410 * 5 4 3 7 7 C 1.51586 * 110.50710 * 310.88250 * 5 4 3 8 8 O 1.21229 * 127.15981 * 298.63037 * 7 5 4 9 9 N 1.34771 * 105.68212 * 118.81576 * 7 5 4 10 10 C 1.39608 * 124.17612 * 179.74642 * 9 7 5 11 11 C 1.39404 * 119.82139 * 353.59503 * 10 9 7 12 12 C 1.36409 * 120.17127 * 179.76093 * 11 10 9 13 13 C 1.40850 * 119.81883 * 0.49334 * 12 11 10 14 14 C 1.41179 * 120.16860 * 179.78317 * 13 12 11 15 15 H 1.07996 * 119.99947 * 28.03260 * 14 13 12 16 16 C 1.39922 * 119.99952 * 208.03151 * 14 13 12 17 17 N 1.30858 * 120.00082 * 13.67102 * 16 14 13 18 18 Si 1.86798 * 120.00001 * 193.67396 * 16 14 13 19 19 H 1.48504 * 109.47169 * 89.99681 * 18 16 14 20 20 H 1.48504 * 109.47298 * 210.00081 * 18 16 14 21 21 H 1.48503 * 109.47121 * 330.00304 * 18 16 14 22 22 C 1.40851 * 119.66034 * 359.76281 * 13 12 11 23 23 C 1.36404 * 119.82420 * 359.97438 * 22 13 12 24 24 C 1.33790 * 111.64976 * 359.77774 * 9 7 5 25 25 O 1.21531 * 123.77487 * 179.97438 * 24 9 7 26 26 N 1.34531 * 112.45426 * 0.02562 * 24 9 7 27 27 C 1.46500 * 126.68855 * 179.97438 * 26 24 9 28 28 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47119 * 300.00161 * 1 2 3 30 30 H 1.08999 * 109.46760 * 60.00128 * 1 2 3 31 31 H 1.09006 * 109.47220 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.47487 * 120.00017 * 2 1 3 33 33 H 1.08998 * 109.47115 * 60.00266 * 4 3 2 34 34 H 1.08995 * 109.47128 * 299.99799 * 4 3 2 35 35 H 1.08001 * 119.91748 * 0.02562 * 11 10 9 36 36 H 1.07999 * 120.08957 * 180.25070 * 12 11 10 37 37 H 0.96997 * 120.00034 * 179.97438 * 17 16 14 38 38 H 1.08009 * 120.08789 * 180.02562 * 22 13 12 39 39 H 1.07992 * 119.91667 * 179.97438 * 23 22 13 40 40 H 1.08994 * 109.47086 * 0.02562 * 27 26 24 41 41 H 1.08998 * 109.47200 * 240.01955 * 27 26 24 42 42 H 1.09003 * 109.46649 * 120.02604 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 1 4.9007 3.0493 -0.1401 7 6 3.0651 3.6903 -1.0744 8 8 3.1031 3.4963 -2.2704 9 7 2.3411 4.6223 -0.4235 10 6 1.4961 5.5388 -1.0519 11 6 1.4654 5.6123 -2.4436 12 6 0.6389 6.5018 -3.0652 13 6 -0.1772 7.3545 -2.2967 14 6 -1.0320 8.2811 -2.9322 15 1 -1.4169 8.0718 -3.9193 16 6 -1.3806 9.4707 -2.2831 17 7 -0.7196 9.8545 -1.2210 18 14 -2.7896 10.5109 -2.9328 19 1 -4.0587 10.0807 -2.2926 20 1 -2.5360 11.9399 -2.6183 21 1 -2.8945 10.3389 -4.4041 22 6 -0.1365 7.2778 -0.8908 23 6 0.6914 6.3793 -0.2842 24 6 2.5326 4.5610 0.8992 25 8 1.9884 5.3003 1.6957 26 7 3.3959 3.5903 1.2491 27 6 3.8283 3.2513 2.6071 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8341 0.9764 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 2.0946 4.9603 -3.0314 36 1 0.6132 6.5548 -4.1436 37 1 -0.9610 10.6793 -0.7713 38 1 -0.7596 7.9281 -0.2948 39 1 0.7241 6.3195 0.7936 40 1 3.3390 3.9143 3.3204 41 1 4.9092 3.3687 2.6841 42 1 3.5586 2.2183 2.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771828635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:50 Heat of formation + Delta-G solvation = -68.898502 kcal Electronic energy + Delta-G solvation = -27144.469689 eV Core-core repulsion = 23283.303301 eV Total energy + Delta-G solvation = -3861.166389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.67678 -39.81997 -39.70993 -38.86785 -37.27444 -36.53422 -35.07727 -32.68144 -31.70027 -31.45027 -30.47898 -28.46693 -26.67969 -25.51557 -23.76042 -23.65485 -23.28464 -21.78615 -21.36387 -19.36389 -18.92854 -18.33619 -17.82439 -17.47654 -17.23964 -17.08288 -16.68422 -16.10653 -15.85941 -15.66587 -15.42670 -15.16155 -15.05920 -14.54533 -14.21181 -14.13060 -13.99367 -13.78312 -13.57568 -13.49322 -13.12401 -13.02567 -12.88397 -12.82804 -12.60659 -12.34008 -12.16920 -11.95929 -11.95653 -11.60660 -11.19926 -10.99850 -10.63870 -10.59201 -10.03382 -9.59256 -9.03439 -8.65860 -6.37263 0.49194 0.76724 1.03730 1.13928 1.38106 1.46146 1.52969 2.00223 2.11296 2.20258 2.57210 2.73723 2.92383 3.62644 3.66405 3.83994 4.14295 4.15337 4.27186 4.35237 4.41484 4.43784 4.45819 4.49553 4.51540 4.70472 4.71472 4.80128 4.91590 4.99216 4.99438 5.10420 5.21828 5.23705 5.29288 5.41727 5.63856 5.72743 5.81193 6.01208 6.20352 6.23936 6.35471 6.42341 6.59481 6.85422 6.88359 7.10801 8.30686 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003533 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.806430 B = 7923.519502 C = 8325.944570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.059 3.941 3 O -0.424 6.424 4 C 0.065 3.935 5 C 0.107 3.893 6 H 0.187 0.813 7 C 0.515 3.485 8 O -0.494 6.494 9 N -0.502 5.502 10 C -0.015 4.015 11 C -0.100 4.100 12 C -0.223 4.223 13 C 0.082 3.918 14 C -0.490 4.490 15 H 0.084 0.916 16 C 0.031 3.969 17 N -0.826 5.826 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.255 1.255 22 C -0.170 4.170 23 C -0.115 4.115 24 C 0.689 3.311 25 O -0.576 6.576 26 N -0.609 5.609 27 C 0.113 3.887 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.290 0.710 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 -18.818 6.717 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 O -0.345 6.345 4 C -0.012 4.012 5 C 0.000 4.000 6 H 0.203 0.797 7 C 0.305 3.695 8 O -0.366 6.366 9 N -0.237 5.237 10 C -0.106 4.106 11 C -0.120 4.120 12 C -0.243 4.243 13 C 0.079 3.921 14 C -0.519 4.519 15 H 0.102 0.898 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.811 3.189 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.178 1.178 22 C -0.190 4.190 23 C -0.135 4.135 24 C 0.392 3.608 25 O -0.453 6.453 26 N -0.348 5.348 27 C -0.025 4.025 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.003 -18.217 6.814 21.871 hybrid contribution -0.716 0.811 -0.283 1.118 sum 9.287 -17.406 6.530 20.781 Atomic orbital electron populations 1.21788 0.94637 1.03210 1.01583 1.22610 0.95132 0.82183 1.01743 1.87991 1.21678 1.28996 1.95791 1.22826 0.82062 0.91386 1.04974 1.22584 1.02812 0.93803 0.80752 0.79674 1.21410 0.79269 0.79277 0.89535 1.90633 1.64009 1.67323 1.14678 1.43366 1.40489 1.31461 1.08393 1.17340 1.02195 0.99327 0.91733 1.20739 1.00000 0.99332 0.91883 1.20852 1.01803 1.02947 0.98735 1.18079 0.90489 0.91255 0.92252 1.19876 1.25999 1.02413 1.03576 0.89833 1.26895 0.98419 0.98951 0.94109 1.69893 1.35746 1.21869 1.17665 0.85074 0.77273 0.76741 0.79814 1.18642 1.19136 1.17825 1.20925 1.02491 1.00382 0.95189 1.21066 0.96379 0.95878 1.00142 1.16110 0.80904 0.82421 0.81333 1.90786 1.54084 1.46737 1.53709 1.47670 1.45148 1.33299 1.08658 1.21852 1.01778 1.02465 0.76448 0.88399 0.93260 0.94203 0.92003 0.90649 0.88881 0.87084 0.84998 0.87026 0.89945 0.87526 0.85560 0.90946 0.87912 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.06 1.00 6.66 71.98 0.48 1.48 16 3 O -0.42 -10.30 9.67 -148.98 -1.44 -11.75 16 4 C 0.06 0.99 5.78 71.98 0.42 1.40 16 5 C 0.11 2.21 3.88 44.37 0.17 2.38 16 6 H 0.19 2.08 8.14 -2.39 -0.02 2.06 16 7 C 0.52 17.94 6.91 87.94 0.61 18.55 16 8 O -0.49 -19.22 15.02 -2.87 -0.04 -19.27 16 9 N -0.50 -21.31 2.81 -594.28 -1.67 -22.98 16 10 C -0.02 -0.78 6.57 38.46 0.25 -0.53 16 11 C -0.10 -5.13 9.24 22.12 0.20 -4.92 16 12 C -0.22 -12.03 9.74 22.48 0.22 -11.81 16 13 C 0.08 4.76 5.55 -21.28 -0.12 4.64 16 14 C -0.49 -27.45 9.04 23.40 0.21 -27.24 16 15 H 0.08 4.44 7.88 -2.91 -0.02 4.42 16 16 C 0.03 1.63 5.20 85.25 0.44 2.07 16 17 N -0.83 -45.33 10.95 21.82 0.24 -45.09 16 18 Si 0.99 39.30 29.58 68.60 2.03 41.33 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.17 -9.94 8.61 22.48 0.19 -9.75 16 23 C -0.12 -6.38 9.18 22.12 0.20 -6.18 16 24 C 0.69 26.70 8.22 179.44 1.48 28.18 16 25 O -0.58 -26.51 14.05 -3.81 -0.05 -26.56 16 26 N -0.61 -15.03 3.11 -842.71 -2.62 -17.65 16 27 C 0.11 1.64 11.06 127.77 1.41 3.05 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 0.79 7.73 -2.39 -0.02 0.77 16 35 H 0.13 6.39 5.32 -2.91 -0.02 6.37 16 36 H 0.11 5.56 8.06 -2.91 -0.02 5.53 16 37 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 38 H 0.11 6.44 6.27 -2.91 -0.02 6.42 16 39 H 0.13 7.04 5.14 -2.91 -0.01 7.02 16 40 H 0.07 1.37 7.67 -2.39 -0.02 1.35 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.83 7.84 -2.39 -0.02 0.81 16 Total: -1.00 -79.85 351.79 4.40 -75.45 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.05 Total: 27.47 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.91 Total: -0.96 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -4.05 Total: -85.72 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.54 Total: -57.58 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -79.85 4.40 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.554 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds