Wall clock time and date at job start Tue Mar 31 2020 13:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21290 * 120.00139 * 2 1 4 4 N 1.34775 * 119.99953 * 180.02562 * 2 1 3 5 5 C 1.47303 * 121.15708 * 353.96967 * 4 2 1 6 6 C 1.53538 * 107.58644 * 221.95517 * 5 4 2 7 7 H 1.09000 * 109.57823 * 61.73142 * 6 5 4 8 8 C 1.50698 * 109.58320 * 182.01064 * 6 5 4 9 9 O 1.21280 * 119.99922 * 115.00443 * 8 6 5 10 10 N 1.34773 * 119.99913 * 294.99614 * 8 6 5 11 11 C 1.46500 * 120.00242 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47376 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99874 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00119 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47060 * 89.99803 * 17 15 13 19 19 H 1.48498 * 109.46906 * 209.99892 * 17 15 13 20 20 H 1.48500 * 109.46860 * 329.99501 * 17 15 13 21 21 O 1.42960 * 108.79578 * 301.80648 * 6 5 4 22 22 C 1.35904 * 117.76654 * 49.52232 * 21 6 5 23 23 C 1.38699 * 119.66278 * 159.86600 * 22 21 6 24 24 C 1.38204 * 120.04838 * 179.67349 * 23 22 21 25 25 C 1.38271 * 120.29558 * 0.02562 * 24 23 22 26 26 C 1.38254 * 120.06426 * 0.03678 * 25 24 23 27 27 C 1.38576 * 119.87428 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47219 * 174.57923 * 1 2 3 29 29 H 1.09000 * 109.46800 * 294.58158 * 1 2 3 30 30 H 1.08996 * 109.47134 * 54.57775 * 1 2 3 31 31 H 1.09004 * 109.83361 * 102.44077 * 5 4 2 32 32 H 1.08997 * 109.89070 * 341.51030 * 5 4 2 33 33 H 0.97004 * 120.00002 * 0.02562 * 10 8 6 34 34 H 1.09001 * 109.46922 * 60.00013 * 11 10 8 35 35 H 1.09000 * 109.46690 * 300.00735 * 11 10 8 36 36 H 1.08997 * 109.47198 * 300.00025 * 12 11 10 37 37 H 1.09007 * 109.46537 * 60.00195 * 12 11 10 38 38 H 0.96993 * 119.99937 * 180.02562 * 16 15 13 39 39 H 1.08000 * 119.97747 * 359.65101 * 23 22 21 40 40 H 1.08006 * 119.85283 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.96768 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.06405 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4762 -2.4540 0.1313 6 6 2.2941 -3.3350 1.0866 7 1 2.3478 -2.8596 2.0660 8 6 1.6373 -4.6852 1.2156 9 8 2.2064 -5.6773 0.8123 10 7 0.4176 -4.7901 1.7792 11 6 -0.2207 -6.1027 1.9052 12 6 -1.5877 -5.9431 2.5735 13 6 -2.2445 -7.2933 2.7024 14 1 -1.7374 -8.1769 2.3440 15 6 -3.4923 -7.4006 3.2790 16 7 -4.0658 -8.5789 3.3911 17 14 -4.3691 -5.8723 3.8995 18 1 -5.1963 -5.2986 2.8078 19 1 -5.2426 -6.2335 5.0449 20 1 -3.3654 -4.8701 4.3393 21 8 3.6116 -3.4918 0.5543 22 6 4.2731 -2.3717 0.1610 23 6 5.6545 -2.3972 0.0398 24 6 6.3347 -1.2647 -0.3661 25 6 5.6441 -0.1015 -0.6526 26 6 4.2672 -0.0662 -0.5334 27 6 3.5804 -1.1987 -0.1256 28 1 -0.3633 -1.0230 -0.0971 29 1 -0.3633 0.4275 0.9345 30 1 -0.3633 0.5956 -0.8374 31 1 1.4012 -2.9362 -0.8434 32 1 0.4794 -2.2908 0.5408 33 1 -0.0376 -3.9965 2.1015 34 1 0.4070 -6.7551 2.5123 35 1 -0.3493 -6.5406 0.9153 36 1 -1.4594 -5.5050 3.5632 37 1 -2.2151 -5.2908 1.9659 38 1 -4.9438 -8.6543 3.7963 39 1 6.1992 -3.3027 0.2630 40 1 7.4104 -1.2882 -0.4598 41 1 6.1810 0.7804 -0.9697 42 1 3.7278 0.8421 -0.7576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784139278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:40 Heat of formation + Delta-G solvation = -61.885529 kcal Electronic energy + Delta-G solvation = -26303.799910 eV Core-core repulsion = 22442.937627 eV Total energy + Delta-G solvation = -3860.862283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85994 -39.88216 -39.15170 -37.58553 -35.96103 -35.18250 -33.02214 -31.92794 -31.42612 -30.30096 -29.79831 -28.24040 -25.81127 -24.58226 -23.54779 -22.03172 -21.00044 -20.55929 -19.89539 -18.63191 -17.89629 -17.76696 -17.00486 -16.44308 -16.42384 -16.07235 -15.64838 -15.20977 -14.97817 -14.72925 -14.37509 -14.26266 -14.13388 -13.82714 -13.75265 -13.49808 -13.13604 -12.89866 -12.70610 -12.54668 -12.21632 -12.13174 -11.72411 -11.62181 -11.40637 -11.29869 -10.62889 -10.53597 -10.44307 -10.08440 -9.97471 -9.68347 -9.42216 -8.85898 -8.74609 -8.69258 -8.15110 -6.19458 -4.20654 0.93732 1.14465 2.06016 2.12150 2.42174 2.54188 3.17150 3.24155 3.26665 3.44947 3.57615 3.87825 3.95907 4.28868 4.32647 4.44497 4.50075 4.60255 4.73270 4.82194 4.93470 5.00463 5.08517 5.12974 5.13847 5.19691 5.37037 5.52137 5.86166 5.90785 6.00844 6.04105 6.12616 6.30394 6.39973 6.43861 6.53183 6.73453 6.95526 7.07165 7.08737 7.52734 7.53144 7.58031 8.18899 8.34919 8.84593 9.39780 10.93479 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002971 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.373952 B = 9423.586352 C =10689.490217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.519 3.481 3 O -0.520 6.520 4 N -0.556 5.556 5 C 0.072 3.928 6 C 0.062 3.938 7 H 0.104 0.896 8 C 0.517 3.483 9 O -0.510 6.510 10 N -0.719 5.719 11 C 0.130 3.870 12 C -0.021 4.021 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.896 5.896 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 O -0.280 6.280 22 C 0.097 3.903 23 C -0.124 4.124 24 C -0.104 4.104 25 C -0.132 4.132 26 C -0.112 4.112 27 C 0.074 3.926 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 19.787 -7.080 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.310 3.690 3 O -0.397 6.397 4 N -0.282 5.282 5 C -0.050 4.050 6 C 0.000 4.000 7 H 0.121 0.879 8 C 0.299 3.701 9 O -0.384 6.384 10 N -0.371 5.371 11 C 0.009 3.991 12 C -0.059 4.059 13 C -0.564 4.564 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 O -0.193 6.193 22 C 0.050 3.950 23 C -0.143 4.143 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.019 4.019 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.195 19.313 -7.306 25.058 hybrid contribution -1.027 1.072 0.624 1.610 sum 13.168 20.385 -6.682 25.172 Atomic orbital electron populations 1.22048 0.90112 1.05346 1.06258 1.21041 0.91009 0.82003 0.74952 1.90588 1.69842 1.30964 1.48267 1.45847 1.04928 1.07193 1.70244 1.22740 0.97076 0.83081 1.02145 1.22602 0.83308 0.95965 0.98098 0.87878 1.19541 0.82180 0.88875 0.79504 1.90771 1.62867 1.37672 1.47132 1.46239 1.17422 1.12477 1.60951 1.21633 0.94803 0.81139 1.01514 1.19801 0.91290 0.99082 0.95725 1.20882 1.02481 0.92335 1.40705 0.90546 1.25006 0.97106 0.95967 0.95160 1.69898 1.16111 1.23150 1.44247 0.86755 0.79836 0.83622 0.78854 1.20189 1.21229 1.19100 1.86174 1.27164 1.28680 1.77293 1.18669 0.91781 0.85063 0.99492 1.20454 0.90031 1.00032 1.03821 1.20975 1.00031 0.92104 0.99210 1.21073 0.93704 0.98370 1.01921 1.21702 0.94604 0.98555 0.98340 1.18015 0.82416 0.95837 1.05652 0.89627 0.87774 0.87786 0.88162 0.86343 0.77006 0.91481 0.91453 0.95894 0.96335 0.92445 0.84502 0.85191 0.85452 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.96 36.00 0.36 -0.67 16 2 C 0.52 5.15 7.70 -10.99 -0.08 5.07 16 3 O -0.52 -6.72 13.98 5.55 0.08 -6.64 16 4 N -0.56 -5.80 3.01 -112.34 -0.34 -6.14 16 5 C 0.07 0.65 5.47 -3.32 -0.02 0.63 16 6 C 0.06 0.71 3.37 -27.61 -0.09 0.62 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 8 C 0.52 7.53 7.19 -10.99 -0.08 7.45 16 9 O -0.51 -9.84 16.51 -14.25 -0.24 -10.07 16 10 N -0.72 -9.84 5.52 -60.30 -0.33 -10.18 16 11 C 0.13 2.37 5.61 -4.04 -0.02 2.35 16 12 C -0.02 -0.44 4.15 -27.89 -0.12 -0.56 16 13 C -0.53 -13.91 9.66 -34.44 -0.33 -14.25 16 14 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 17 Si 0.88 19.88 27.47 -169.99 -4.67 15.21 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -5.58 6.54 56.52 0.37 -5.21 16 21 O -0.28 -3.94 9.51 -39.24 -0.37 -4.31 16 22 C 0.10 1.24 6.51 -39.05 -0.25 0.98 16 23 C -0.12 -1.36 9.97 -39.42 -0.39 -1.76 16 24 C -0.10 -0.96 10.03 -39.58 -0.40 -1.35 16 25 C -0.13 -1.27 10.05 -39.56 -0.40 -1.67 16 26 C -0.11 -1.31 8.94 -39.45 -0.35 -1.66 16 27 C 0.07 0.91 6.33 -83.37 -0.53 0.38 16 28 H 0.08 0.35 5.58 -51.93 -0.29 0.06 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 0.67 5.74 -51.93 -0.30 0.37 16 33 H 0.40 4.06 8.36 -40.82 -0.34 3.72 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 37 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.16 1.99 5.17 -52.55 -0.27 1.72 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -34.57 350.08 -7.99 -42.56 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.36 Total: 2.49 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.81 Total: -2.62 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.10 Total: -41.90 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.53 Total: -21.02 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.57 -7.99 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.323 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds