Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21290 * 120.00139 * 2 1 4 4 N 1.34775 * 119.99953 * 180.02562 * 2 1 3 5 5 C 1.47303 * 121.15708 * 353.96967 * 4 2 1 6 6 C 1.53538 * 107.58644 * 221.95517 * 5 4 2 7 7 H 1.09000 * 109.57823 * 61.73142 * 6 5 4 8 8 C 1.50698 * 109.58320 * 182.01064 * 6 5 4 9 9 O 1.21280 * 119.99922 * 115.00443 * 8 6 5 10 10 N 1.34773 * 119.99913 * 294.99614 * 8 6 5 11 11 C 1.46500 * 120.00242 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47376 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99874 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00119 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47060 * 89.99803 * 17 15 13 19 19 H 1.48498 * 109.46906 * 209.99892 * 17 15 13 20 20 H 1.48500 * 109.46860 * 329.99501 * 17 15 13 21 21 O 1.42960 * 108.79578 * 301.80648 * 6 5 4 22 22 C 1.35904 * 117.76654 * 49.52232 * 21 6 5 23 23 C 1.38699 * 119.66278 * 159.86600 * 22 21 6 24 24 C 1.38204 * 120.04838 * 179.67349 * 23 22 21 25 25 C 1.38271 * 120.29558 * 0.02562 * 24 23 22 26 26 C 1.38254 * 120.06426 * 0.03678 * 25 24 23 27 27 C 1.38576 * 119.87428 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47219 * 174.57923 * 1 2 3 29 29 H 1.09000 * 109.46800 * 294.58158 * 1 2 3 30 30 H 1.08996 * 109.47134 * 54.57775 * 1 2 3 31 31 H 1.09004 * 109.83361 * 102.44077 * 5 4 2 32 32 H 1.08997 * 109.89070 * 341.51030 * 5 4 2 33 33 H 0.97004 * 120.00002 * 0.02562 * 10 8 6 34 34 H 1.09001 * 109.46922 * 60.00013 * 11 10 8 35 35 H 1.09000 * 109.46690 * 300.00735 * 11 10 8 36 36 H 1.08997 * 109.47198 * 300.00025 * 12 11 10 37 37 H 1.09007 * 109.46537 * 60.00195 * 12 11 10 38 38 H 0.96993 * 119.99937 * 180.02562 * 16 15 13 39 39 H 1.08000 * 119.97747 * 359.65101 * 23 22 21 40 40 H 1.08006 * 119.85283 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.96768 * 180.02562 * 25 24 23 42 42 H 1.07994 * 120.06405 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4762 -2.4540 0.1313 6 6 2.2941 -3.3350 1.0866 7 1 2.3478 -2.8596 2.0660 8 6 1.6373 -4.6852 1.2156 9 8 2.2064 -5.6773 0.8123 10 7 0.4176 -4.7901 1.7792 11 6 -0.2207 -6.1027 1.9052 12 6 -1.5877 -5.9431 2.5735 13 6 -2.2445 -7.2933 2.7024 14 1 -1.7374 -8.1769 2.3440 15 6 -3.4923 -7.4006 3.2790 16 7 -4.0658 -8.5789 3.3911 17 14 -4.3691 -5.8723 3.8995 18 1 -5.1963 -5.2986 2.8078 19 1 -5.2426 -6.2335 5.0449 20 1 -3.3654 -4.8701 4.3393 21 8 3.6116 -3.4918 0.5543 22 6 4.2731 -2.3717 0.1610 23 6 5.6545 -2.3972 0.0398 24 6 6.3347 -1.2647 -0.3661 25 6 5.6441 -0.1015 -0.6526 26 6 4.2672 -0.0662 -0.5334 27 6 3.5804 -1.1987 -0.1256 28 1 -0.3633 -1.0230 -0.0971 29 1 -0.3633 0.4275 0.9345 30 1 -0.3633 0.5956 -0.8374 31 1 1.4012 -2.9362 -0.8434 32 1 0.4794 -2.2908 0.5408 33 1 -0.0376 -3.9965 2.1015 34 1 0.4070 -6.7551 2.5123 35 1 -0.3493 -6.5406 0.9153 36 1 -1.4594 -5.5050 3.5632 37 1 -2.2151 -5.2908 1.9659 38 1 -4.9438 -8.6543 3.7963 39 1 6.1992 -3.3027 0.2630 40 1 7.4104 -1.2882 -0.4598 41 1 6.1810 0.7804 -0.9697 42 1 3.7278 0.8421 -0.7576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784139278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -85.906488 kcal Electronic energy + Delta-G solvation = -26304.841537 eV Core-core repulsion = 22442.937627 eV Total energy + Delta-G solvation = -3861.903910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69217 -40.93743 -40.09132 -38.47261 -36.86441 -36.58471 -34.83851 -32.99215 -32.24588 -31.57303 -30.67640 -29.02098 -27.11111 -25.84491 -24.35488 -23.00829 -22.57675 -21.68331 -20.65822 -19.52258 -19.01035 -18.76922 -18.61499 -17.35908 -17.29118 -16.92566 -16.75859 -16.26390 -16.15743 -16.05840 -15.69177 -15.11015 -15.09346 -14.86555 -14.80252 -14.55210 -14.41201 -14.11522 -13.53585 -13.32981 -13.09912 -13.02611 -12.91128 -12.83945 -12.50456 -12.22715 -12.19591 -12.13737 -11.72807 -11.49226 -11.40656 -11.08066 -10.75446 -10.65149 -10.17766 -9.57609 -8.97071 -8.26483 -6.34227 0.14756 0.31179 1.20264 1.36824 1.42861 1.44620 1.46509 1.52383 1.56995 2.40529 2.48061 2.74880 3.09301 3.10971 3.24652 3.47789 3.63886 3.74989 3.82753 4.09943 4.24302 4.27826 4.34067 4.35725 4.41339 4.45405 4.50388 4.60634 4.74799 4.78024 4.97283 5.07234 5.11616 5.22756 5.37353 5.39684 5.44843 5.52797 5.64602 5.73995 6.02368 6.20134 6.24617 6.45142 6.74638 6.80977 7.07995 7.30562 8.90369 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002971 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.373952 B = 9423.586352 C =10689.490217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.556 6.556 4 N -0.557 5.557 5 C 0.076 3.924 6 C 0.066 3.934 7 H 0.125 0.875 8 C 0.523 3.477 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.145 3.855 12 C -0.013 4.013 13 C -0.539 4.539 14 H 0.027 0.973 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.960 3.040 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.230 1.230 21 O -0.308 6.308 22 C 0.074 3.926 23 C -0.135 4.135 24 C -0.098 4.098 25 C -0.129 4.129 26 C -0.129 4.129 27 C 0.059 3.941 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.419 0.581 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.267 0.733 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.342 23.368 -6.782 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.307 3.693 3 O -0.435 6.435 4 N -0.283 5.283 5 C -0.046 4.046 6 C 0.006 3.994 7 H 0.143 0.857 8 C 0.307 3.693 9 O -0.441 6.441 10 N -0.353 5.353 11 C 0.022 3.978 12 C -0.051 4.051 13 C -0.577 4.577 14 H 0.045 0.955 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.782 3.218 18 H -0.187 1.187 19 H -0.220 1.220 20 H -0.153 1.153 21 O -0.222 6.222 22 C 0.027 3.973 23 C -0.154 4.154 24 C -0.117 4.117 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.034 4.034 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.257 0.743 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.866 22.942 -7.010 27.708 hybrid contribution -0.802 -0.127 0.479 0.942 sum 13.064 22.815 -6.532 27.090 Atomic orbital electron populations 1.22138 0.86460 1.07033 1.07479 1.21885 0.92608 0.81154 0.73696 1.90573 1.70920 1.32109 1.49888 1.45987 1.04375 1.07855 1.70055 1.22863 0.98082 0.82051 1.01640 1.22579 0.82890 0.94026 0.99929 0.85739 1.20007 0.81722 0.89522 0.78020 1.90755 1.64194 1.39842 1.49337 1.45833 1.17214 1.11664 1.60603 1.21131 0.93774 0.82935 0.99992 1.19671 0.92087 0.96090 0.97232 1.21273 1.02745 0.93730 1.39996 0.95486 1.26130 0.98121 0.99936 0.95392 1.70091 1.16822 1.26423 1.46064 0.85534 0.78896 0.79272 0.78125 1.18723 1.22029 1.15253 1.86116 1.28303 1.29881 1.77897 1.18895 0.92441 0.84996 1.00918 1.20755 0.89801 1.01010 1.03822 1.21316 1.01517 0.91096 0.97757 1.21420 0.93168 0.99446 1.00689 1.21790 0.95606 0.98204 0.99260 1.18205 0.83627 0.95767 1.05833 0.87572 0.86195 0.86841 0.88461 0.82380 0.74306 0.93678 0.93027 0.94198 0.93688 0.92462 0.83995 0.82071 0.82977 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.96 71.23 0.71 -0.61 16 2 C 0.51 9.11 7.70 87.66 0.68 9.78 16 3 O -0.56 -13.79 13.98 -3.06 -0.04 -13.84 16 4 N -0.56 -10.59 3.01 -627.72 -1.89 -12.48 16 5 C 0.08 1.16 5.47 86.41 0.47 1.63 16 6 C 0.07 1.42 3.37 30.03 0.10 1.52 16 7 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 8 C 0.52 14.63 7.19 87.66 0.63 15.26 16 9 O -0.56 -22.07 16.51 15.91 0.26 -21.81 16 10 N -0.70 -17.46 5.52 -463.07 -2.56 -20.02 16 11 C 0.14 5.16 5.61 86.38 0.48 5.65 16 12 C -0.01 -0.51 4.15 29.85 0.12 -0.39 16 13 C -0.54 -28.91 9.66 25.60 0.25 -28.67 16 14 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 15 C 0.00 0.05 5.47 84.65 0.46 0.52 16 16 N -0.95 -57.77 13.96 21.45 0.30 -57.47 16 17 Si 0.96 39.35 27.47 68.60 1.88 41.23 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 21 O -0.31 -8.59 9.51 -73.53 -0.70 -9.29 16 22 C 0.07 1.85 6.51 22.61 0.15 2.00 16 23 C -0.13 -2.86 9.97 22.37 0.22 -2.64 16 24 C -0.10 -1.62 10.03 22.27 0.22 -1.40 16 25 C -0.13 -2.27 10.05 22.28 0.22 -2.04 16 26 C -0.13 -2.90 8.94 22.35 0.20 -2.70 16 27 C 0.06 1.41 6.33 38.05 0.24 1.65 16 28 H 0.11 0.35 5.58 -2.39 -0.01 0.34 16 29 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.16 1.03 5.74 -2.39 -0.01 1.02 16 33 H 0.42 6.71 8.36 -92.71 -0.77 5.93 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 37 H 0.04 1.56 7.57 -2.38 -0.02 1.54 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.15 3.73 5.17 -3.91 -0.02 3.71 16 Total: -1.00 -80.58 350.08 2.65 -77.93 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.23 Total: 16.18 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.17 Total: -0.45 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -4.15 Total: -89.97 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.48 Total: -44.93 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.88 Total: 41.23 kcal Total: -80.58 2.65 -77.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.976 kcal (2) G-P(sol) polarization free energy of solvation -80.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds