Wall clock time and date at job start Tue Mar 31 2020 13:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21299 * 119.99749 * 2 1 4 4 N 1.34777 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.47294 * 121.15628 * 356.34159 * 4 2 1 6 6 C 1.53533 * 107.58614 * 138.07619 * 5 4 2 7 7 H 1.09000 * 109.58246 * 298.38846 * 6 5 4 8 8 C 1.50698 * 109.69842 * 178.04675 * 6 5 4 9 9 O 1.21282 * 119.99834 * 245.34507 * 8 6 5 10 10 N 1.34774 * 119.99764 * 65.33485 * 8 6 5 11 11 C 1.46497 * 119.99928 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47569 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47706 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99382 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99909 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47050 * 89.99857 * 17 15 13 19 19 H 1.48501 * 109.46969 * 210.00263 * 17 15 13 20 20 H 1.48502 * 109.47157 * 329.99986 * 17 15 13 21 21 O 1.42962 * 108.80373 * 58.18131 * 6 5 4 22 22 C 1.35892 * 117.76951 * 310.50241 * 21 6 5 23 23 C 1.38705 * 119.66263 * 200.29143 * 22 21 6 24 24 C 1.38207 * 120.05022 * 180.16246 * 23 22 21 25 25 C 1.38282 * 120.29605 * 359.97438 * 24 23 22 26 26 C 1.38258 * 120.06019 * 359.97438 * 25 24 23 27 27 C 1.38577 * 119.87530 * 359.94117 * 26 25 24 28 28 H 1.09000 * 109.47314 * 185.42247 * 1 2 3 29 29 H 1.09006 * 109.46899 * 305.41902 * 1 2 3 30 30 H 1.08994 * 109.47137 * 65.41604 * 1 2 3 31 31 H 1.08998 * 109.84040 * 18.55064 * 5 4 2 32 32 H 1.09009 * 109.83057 * 257.59150 * 5 4 2 33 33 H 0.97001 * 120.00492 * 0.02562 * 10 8 6 34 34 H 1.08997 * 109.47470 * 300.00548 * 11 10 8 35 35 H 1.09005 * 109.47185 * 60.00183 * 11 10 8 36 36 H 1.09003 * 109.47443 * 300.00454 * 12 11 10 37 37 H 1.09005 * 109.46850 * 59.99815 * 12 11 10 38 38 H 0.97000 * 120.00312 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.97788 * 0.18821 * 23 22 21 40 40 H 1.07999 * 119.85356 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.97074 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.06174 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4725 -2.4562 0.0793 6 6 2.1483 -3.4187 -0.9076 7 1 2.0582 -3.0262 -1.9205 8 6 1.4889 -4.7716 -0.8297 9 8 2.1151 -5.7290 -0.4269 10 7 0.2035 -4.9175 -1.2076 11 6 -0.4377 -6.2325 -1.1314 12 6 -1.8849 -6.1232 -1.6156 13 6 -2.5446 -7.4758 -1.5367 14 1 -1.9875 -8.3281 -1.1766 15 6 -3.8594 -7.6252 -1.9241 16 7 -4.4353 -8.8055 -1.8547 17 14 -4.8227 -6.1511 -2.5475 18 1 -4.6610 -6.0408 -4.0195 19 1 -6.2605 -6.3246 -2.2189 20 1 -4.3123 -4.9163 -1.8995 21 8 3.5302 -3.5386 -0.5614 22 6 4.2348 -2.3936 -0.3631 23 6 5.6192 -2.4166 -0.4457 24 6 6.3439 -1.2576 -0.2421 25 6 5.6952 -0.0703 0.0440 26 6 4.3155 -0.0376 0.1272 27 6 3.5840 -1.1966 -0.0777 28 1 -0.3634 -1.0230 0.0971 29 1 -0.3633 0.5956 0.8375 30 1 -0.3633 0.4275 -0.9345 31 1 0.4261 -2.3207 -0.1938 32 1 1.5429 -2.8547 1.0915 33 1 -0.2972 -4.1518 -1.5299 34 1 0.1038 -6.9378 -1.7618 35 1 -0.4250 -6.5836 -0.0995 36 1 -2.4266 -5.4178 -0.9856 37 1 -1.8971 -5.7722 -2.6476 38 1 -5.3604 -8.9106 -2.1269 39 1 6.1312 -3.3408 -0.6697 40 1 7.4217 -1.2790 -0.3076 41 1 6.2668 0.8322 0.2025 42 1 3.8089 0.8894 0.3511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784139279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:44 Heat of formation + Delta-G solvation = -58.563150 kcal Electronic energy + Delta-G solvation = -26309.927018 eV Core-core repulsion = 22449.208803 eV Total energy + Delta-G solvation = -3860.718214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86845 -39.88977 -39.15133 -37.58118 -35.96913 -35.18455 -33.02363 -31.94513 -31.43528 -30.29014 -29.78058 -28.24876 -25.81949 -24.58322 -23.54085 -22.03579 -21.00316 -20.56420 -19.91225 -18.63244 -17.93626 -17.76497 -17.00903 -16.44743 -16.40028 -16.08210 -15.64909 -15.21245 -14.97115 -14.74046 -14.43949 -14.26601 -14.13583 -13.81495 -13.74863 -13.49122 -13.14282 -12.89520 -12.70482 -12.54064 -12.21393 -12.09231 -11.74860 -11.62191 -11.42153 -11.29711 -10.62757 -10.53453 -10.43788 -10.08411 -9.89483 -9.66150 -9.42310 -8.86105 -8.75115 -8.69433 -8.15416 -6.19578 -4.20783 0.94646 1.15524 2.06733 2.11544 2.42009 2.53471 3.17421 3.23424 3.26439 3.44057 3.57888 3.88306 3.93918 4.28680 4.29501 4.43714 4.49615 4.59705 4.75047 4.83575 4.92735 5.01958 5.08347 5.12869 5.14979 5.20879 5.38036 5.52439 5.86689 5.90617 6.03138 6.03933 6.13623 6.31508 6.39861 6.43700 6.55882 6.73509 6.95597 7.07989 7.08545 7.52532 7.54245 7.57829 8.18718 8.34777 8.84463 9.39628 10.93362 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.002969 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.300403 B = 9428.675985 C =10696.683473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.519 3.481 3 O -0.521 6.521 4 N -0.555 5.555 5 C 0.071 3.929 6 C 0.061 3.939 7 H 0.103 0.897 8 C 0.517 3.483 9 O -0.510 6.510 10 N -0.719 5.719 11 C 0.130 3.870 12 C -0.021 4.021 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.896 5.896 17 Si 0.883 3.117 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 O -0.281 6.281 22 C 0.097 3.903 23 C -0.125 4.125 24 C -0.104 4.104 25 C -0.133 4.133 26 C -0.119 4.119 27 C 0.072 3.928 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.275 20.284 2.823 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.311 3.689 3 O -0.397 6.397 4 N -0.280 5.280 5 C -0.052 4.052 6 C 0.000 4.000 7 H 0.121 0.879 8 C 0.299 3.701 9 O -0.384 6.384 10 N -0.371 5.371 11 C 0.009 3.991 12 C -0.059 4.059 13 C -0.564 4.564 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 O -0.193 6.193 22 C 0.050 3.950 23 C -0.144 4.144 24 C -0.123 4.123 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.021 4.021 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.830 19.829 3.110 24.956 hybrid contribution -1.075 0.985 -0.601 1.577 sum 13.755 20.814 2.509 25.075 Atomic orbital electron populations 1.22070 0.90104 1.05349 1.06315 1.21042 0.91006 0.81976 0.74901 1.90516 1.69442 1.31088 1.48683 1.45811 1.04590 1.07118 1.70482 1.22798 0.98141 0.82378 1.01906 1.22607 0.82050 0.95591 0.99741 0.87893 1.19543 0.82658 0.88563 0.79344 1.90772 1.63058 1.40126 1.44476 1.46234 1.11047 1.13974 1.65829 1.21633 0.94525 0.81008 1.01931 1.19802 0.90693 0.99187 0.96213 1.20883 0.97116 0.93605 1.44809 0.90549 1.25005 0.97509 0.95786 0.94944 1.69897 1.13198 1.22680 1.47626 0.86750 0.79376 0.83398 0.79496 1.20204 1.21236 1.19116 1.86169 1.20648 1.27706 1.84823 1.18680 0.91764 0.84084 1.00463 1.20451 0.90007 0.99849 1.04121 1.20987 0.99940 0.91841 0.99557 1.21108 0.93975 0.98203 1.01888 1.22029 0.94012 0.98861 0.98893 1.18055 0.82322 0.95148 1.06579 0.89575 0.87778 0.87707 0.86182 0.88117 0.77013 0.91503 0.91431 0.95903 0.96329 0.92443 0.84528 0.85235 0.85478 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 10.08 36.01 0.36 -0.66 16 2 C 0.52 5.14 7.76 -10.98 -0.09 5.05 16 3 O -0.52 -6.65 13.81 5.54 0.08 -6.58 16 4 N -0.55 -5.78 3.01 -112.34 -0.34 -6.12 16 5 C 0.07 0.63 5.70 -3.33 -0.02 0.61 16 6 C 0.06 0.71 3.37 -27.61 -0.09 0.61 16 7 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.52 7.51 7.19 -10.99 -0.08 7.43 16 9 O -0.51 -9.83 16.51 -14.24 -0.24 -10.07 16 10 N -0.72 -9.79 5.53 -60.30 -0.33 -10.12 16 11 C 0.13 2.36 5.61 -4.04 -0.02 2.34 16 12 C -0.02 -0.44 4.16 -27.88 -0.12 -0.55 16 13 C -0.53 -13.90 9.66 -34.44 -0.33 -14.23 16 14 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 17 Si 0.88 19.85 27.47 -169.99 -4.67 15.18 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -5.51 6.54 56.52 0.37 -5.14 16 21 O -0.28 -3.94 9.51 -39.20 -0.37 -4.32 16 22 C 0.10 1.24 6.51 -39.05 -0.25 0.99 16 23 C -0.13 -1.38 9.97 -39.42 -0.39 -1.77 16 24 C -0.10 -0.97 10.03 -39.58 -0.40 -1.36 16 25 C -0.13 -1.29 10.05 -39.56 -0.40 -1.69 16 26 C -0.12 -1.39 9.02 -39.45 -0.36 -1.74 16 27 C 0.07 0.89 6.34 -83.37 -0.53 0.36 16 28 H 0.09 0.35 5.30 -51.93 -0.28 0.07 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 0.67 5.39 -51.93 -0.28 0.39 16 32 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.40 4.01 8.40 -40.82 -0.34 3.67 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.17 2.12 4.92 -53.52 -0.26 1.86 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -34.52 349.57 -7.96 -42.48 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.32 Total: 2.66 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.81 Total: -2.82 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.10 Total: -41.81 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.53 Total: -20.96 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.52 -7.96 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.086 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds