Wall clock time and date at job start Tue Mar 31 2020 13:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21299 * 119.99749 * 2 1 4 4 N 1.34777 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.47294 * 121.15628 * 356.34159 * 4 2 1 6 6 C 1.53533 * 107.58614 * 138.07619 * 5 4 2 7 7 H 1.09000 * 109.58246 * 298.38846 * 6 5 4 8 8 C 1.50698 * 109.69842 * 178.04675 * 6 5 4 9 9 O 1.21282 * 119.99834 * 245.34507 * 8 6 5 10 10 N 1.34774 * 119.99764 * 65.33485 * 8 6 5 11 11 C 1.46497 * 119.99928 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47569 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47706 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99382 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99909 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47050 * 89.99857 * 17 15 13 19 19 H 1.48501 * 109.46969 * 210.00263 * 17 15 13 20 20 H 1.48502 * 109.47157 * 329.99986 * 17 15 13 21 21 O 1.42962 * 108.80373 * 58.18131 * 6 5 4 22 22 C 1.35892 * 117.76951 * 310.50241 * 21 6 5 23 23 C 1.38705 * 119.66263 * 200.29143 * 22 21 6 24 24 C 1.38207 * 120.05022 * 180.16246 * 23 22 21 25 25 C 1.38282 * 120.29605 * 359.97438 * 24 23 22 26 26 C 1.38258 * 120.06019 * 359.97438 * 25 24 23 27 27 C 1.38577 * 119.87530 * 359.94117 * 26 25 24 28 28 H 1.09000 * 109.47314 * 185.42247 * 1 2 3 29 29 H 1.09006 * 109.46899 * 305.41902 * 1 2 3 30 30 H 1.08994 * 109.47137 * 65.41604 * 1 2 3 31 31 H 1.08998 * 109.84040 * 18.55064 * 5 4 2 32 32 H 1.09009 * 109.83057 * 257.59150 * 5 4 2 33 33 H 0.97001 * 120.00492 * 0.02562 * 10 8 6 34 34 H 1.08997 * 109.47470 * 300.00548 * 11 10 8 35 35 H 1.09005 * 109.47185 * 60.00183 * 11 10 8 36 36 H 1.09003 * 109.47443 * 300.00454 * 12 11 10 37 37 H 1.09005 * 109.46850 * 59.99815 * 12 11 10 38 38 H 0.97000 * 120.00312 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.97788 * 0.18821 * 23 22 21 40 40 H 1.07999 * 119.85356 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.97074 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.06174 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4725 -2.4562 0.0793 6 6 2.1483 -3.4187 -0.9076 7 1 2.0582 -3.0262 -1.9205 8 6 1.4889 -4.7716 -0.8297 9 8 2.1151 -5.7290 -0.4269 10 7 0.2035 -4.9175 -1.2076 11 6 -0.4377 -6.2325 -1.1314 12 6 -1.8849 -6.1232 -1.6156 13 6 -2.5446 -7.4758 -1.5367 14 1 -1.9875 -8.3281 -1.1766 15 6 -3.8594 -7.6252 -1.9241 16 7 -4.4353 -8.8055 -1.8547 17 14 -4.8227 -6.1511 -2.5475 18 1 -4.6610 -6.0408 -4.0195 19 1 -6.2605 -6.3246 -2.2189 20 1 -4.3123 -4.9163 -1.8995 21 8 3.5302 -3.5386 -0.5614 22 6 4.2348 -2.3936 -0.3631 23 6 5.6192 -2.4166 -0.4457 24 6 6.3439 -1.2576 -0.2421 25 6 5.6952 -0.0703 0.0440 26 6 4.3155 -0.0376 0.1272 27 6 3.5840 -1.1966 -0.0777 28 1 -0.3634 -1.0230 0.0971 29 1 -0.3633 0.5956 0.8375 30 1 -0.3633 0.4275 -0.9345 31 1 0.4261 -2.3207 -0.1938 32 1 1.5429 -2.8547 1.0915 33 1 -0.2972 -4.1518 -1.5299 34 1 0.1038 -6.9378 -1.7618 35 1 -0.4250 -6.5836 -0.0995 36 1 -2.4266 -5.4178 -0.9856 37 1 -1.8971 -5.7722 -2.6476 38 1 -5.3604 -8.9106 -2.1269 39 1 6.1312 -3.3408 -0.6697 40 1 7.4217 -1.2790 -0.3076 41 1 6.2668 0.8322 0.2025 42 1 3.8089 0.8894 0.3511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784139279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:43 Heat of formation + Delta-G solvation = -82.639853 kcal Electronic energy + Delta-G solvation = -26310.971062 eV Core-core repulsion = 22449.208803 eV Total energy + Delta-G solvation = -3861.762259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.69930 -40.93945 -40.09249 -38.46861 -36.86858 -36.58526 -34.83674 -32.99456 -32.26676 -31.57043 -30.64902 -29.02782 -27.11644 -25.84580 -24.35170 -23.00966 -22.57661 -21.68260 -20.67832 -19.52177 -19.00809 -18.76574 -18.64987 -17.37855 -17.27472 -16.90494 -16.76183 -16.24608 -16.17596 -16.05257 -15.69306 -15.16574 -15.08137 -14.88638 -14.79304 -14.54784 -14.40549 -14.10802 -13.55627 -13.32263 -13.09515 -13.02671 -12.92874 -12.76992 -12.52867 -12.23366 -12.20355 -12.12688 -11.71658 -11.48999 -11.40682 -11.05566 -10.75554 -10.55502 -10.17482 -9.58454 -8.97579 -8.26257 -6.34045 0.15340 0.31799 1.20808 1.38091 1.43303 1.43858 1.46413 1.52044 1.57207 2.40823 2.47705 2.74884 3.09610 3.10871 3.23817 3.47755 3.64267 3.75622 3.78855 4.10195 4.24556 4.28025 4.34636 4.35829 4.41365 4.45639 4.53110 4.60992 4.74602 4.78330 4.98654 5.07511 5.11876 5.25044 5.37912 5.40111 5.45181 5.53523 5.64833 5.75656 6.02512 6.21133 6.24880 6.45652 6.74826 6.82158 7.08543 7.30730 8.90598 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.002969 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.300403 B = 9428.675985 C =10696.683473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.556 6.556 4 N -0.556 5.556 5 C 0.074 3.926 6 C 0.067 3.933 7 H 0.127 0.873 8 C 0.523 3.477 9 O -0.564 6.564 10 N -0.699 5.699 11 C 0.145 3.855 12 C -0.013 4.013 13 C -0.539 4.539 14 H 0.026 0.974 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.959 3.041 18 H -0.268 1.268 19 H -0.293 1.293 20 H -0.224 1.224 21 O -0.309 6.309 22 C 0.075 3.925 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.135 4.135 27 C 0.058 3.942 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.420 0.580 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.845 23.876 2.177 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.307 3.693 3 O -0.435 6.435 4 N -0.281 5.281 5 C -0.048 4.048 6 C 0.006 3.994 7 H 0.145 0.855 8 C 0.307 3.693 9 O -0.442 6.442 10 N -0.353 5.353 11 C 0.022 3.978 12 C -0.051 4.051 13 C -0.578 4.578 14 H 0.045 0.955 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.147 1.147 21 O -0.223 6.223 22 C 0.028 3.972 23 C -0.155 4.155 24 C -0.117 4.117 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.036 4.036 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.178 0.822 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.404 23.470 2.462 27.648 hybrid contribution -0.813 -0.215 -0.361 0.916 sum 13.591 23.255 2.100 27.017 Atomic orbital electron populations 1.22160 0.86409 1.07058 1.07526 1.21900 0.92633 0.81133 0.73663 1.90502 1.70510 1.32201 1.50239 1.45951 1.04009 1.07792 1.70320 1.22914 0.99675 0.81207 1.00989 1.22593 0.81320 0.93702 1.01799 0.85541 1.20018 0.82302 0.89230 0.77752 1.90756 1.64323 1.42275 1.46827 1.45823 1.10944 1.13069 1.65444 1.21129 0.93528 0.82814 1.00375 1.19673 0.91400 0.96147 0.97855 1.21277 0.97367 0.95139 1.43974 0.95526 1.26134 0.98863 0.99437 0.95174 1.70090 1.13745 1.25913 1.49679 0.85539 0.76882 0.80176 0.79252 1.19352 1.21890 1.14678 1.86111 1.21868 1.28878 1.85400 1.18900 0.92364 0.83939 1.01998 1.20751 0.89805 1.00866 1.04062 1.21323 1.01402 0.90863 0.98133 1.21449 0.93491 0.99386 1.00523 1.22111 0.95019 0.98479 0.99890 1.18242 0.83575 0.95050 1.06710 0.87456 0.86803 0.86174 0.82193 0.88639 0.74264 0.93696 0.93071 0.93503 0.94299 0.92470 0.84027 0.82141 0.83038 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.08 71.24 0.72 -0.57 16 2 C 0.51 9.04 7.76 87.66 0.68 9.72 16 3 O -0.56 -13.63 13.81 -3.09 -0.04 -13.67 16 4 N -0.56 -10.54 3.01 -627.73 -1.89 -12.43 16 5 C 0.07 1.13 5.70 86.41 0.49 1.63 16 6 C 0.07 1.41 3.37 30.03 0.10 1.51 16 7 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 8 C 0.52 14.55 7.19 87.66 0.63 15.18 16 9 O -0.56 -22.08 16.51 15.90 0.26 -21.82 16 10 N -0.70 -17.29 5.53 -463.07 -2.56 -19.85 16 11 C 0.14 5.14 5.61 86.38 0.48 5.62 16 12 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 13 C -0.54 -28.88 9.66 25.60 0.25 -28.63 16 14 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 15 C 0.00 0.04 5.47 84.65 0.46 0.50 16 16 N -0.95 -57.77 13.96 21.45 0.30 -57.47 16 17 Si 0.96 39.21 27.47 68.60 1.88 41.10 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.22 -7.61 6.54 99.48 0.65 -6.96 16 21 O -0.31 -8.59 9.51 -73.40 -0.70 -9.29 16 22 C 0.07 1.87 6.51 22.61 0.15 2.02 16 23 C -0.14 -2.90 9.97 22.37 0.22 -2.68 16 24 C -0.10 -1.65 10.03 22.27 0.22 -1.42 16 25 C -0.13 -2.32 10.05 22.28 0.22 -2.09 16 26 C -0.14 -3.08 9.02 22.36 0.20 -2.87 16 27 C 0.06 1.37 6.34 38.06 0.24 1.62 16 28 H 0.11 0.30 5.30 -2.39 -0.01 0.29 16 29 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.16 1.02 5.39 -2.39 -0.01 1.01 16 32 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.42 6.54 8.40 -92.71 -0.78 5.76 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.05 1.64 7.20 -2.39 -0.02 1.62 16 37 H 0.04 1.39 7.57 -2.38 -0.02 1.37 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.16 3.98 4.92 -19.30 -0.09 3.89 16 Total: -1.00 -80.69 349.57 2.61 -78.08 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.15 Total: 16.21 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.20 Total: -0.86 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -4.15 Total: -89.74 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.48 Total: -44.78 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.88 Total: 41.10 kcal Total: -80.69 2.61 -78.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784139279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.557 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds