Wall clock time and date at job start Tue Mar 31 2020 12:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47618 * 344.18505 * 3 2 1 5 5 C 1.42897 * 114.00270 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46897 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46843 * 65.01107 * 6 5 4 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 4.38449 * 5.44419 * 180.02562 * 4 1 2 28 28 H 1.09009 * 109.46877 * 224.19107 * 3 2 1 29 29 H 1.09001 * 109.47263 * 104.19273 * 3 2 1 30 30 H 1.09005 * 109.46903 * 60.00947 * 5 4 3 31 31 H 1.08994 * 109.47607 * 300.00915 * 5 4 3 32 32 H 1.08994 * 109.47328 * 305.00327 * 6 5 4 33 33 H 1.09002 * 109.46440 * 185.00219 * 6 5 4 34 34 H 0.96996 * 120.00042 * 359.97438 * 7 6 5 35 35 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 37 37 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2953 0.3672 5 6 4.5476 -1.4034 0.3973 6 6 4.9427 -2.8257 0.7996 7 7 4.5048 -3.7654 -0.2355 8 6 4.7460 -5.0839 -0.0943 9 8 5.3274 -5.4933 0.8919 10 7 4.3426 -5.9484 -1.0462 11 6 4.6053 -7.3816 -0.8931 12 6 4.0568 -8.1229 -2.0849 13 6 4.8544 -8.3306 -3.1954 14 6 4.3549 -9.0101 -4.2890 15 6 3.0497 -9.4847 -4.2729 16 8 2.5560 -10.1534 -5.3461 17 6 3.4169 -10.4240 -6.3479 18 1 4.4259 -10.0408 -6.3111 19 6 3.0067 -11.1942 -7.4255 20 7 1.7777 -11.6614 -7.4702 21 14 4.1996 -11.5696 -8.8130 22 1 5.3720 -12.3037 -8.2729 23 1 3.5215 -12.4052 -9.8364 24 1 4.6539 -10.2988 -9.4326 25 6 2.2492 -9.2691 -3.1588 26 6 2.7565 -8.5938 -2.0661 27 1 -1.0498 -0.0005 -0.0001 28 1 3.0090 0.7377 0.7164 29 1 3.0092 0.2528 -0.9963 30 1 4.9503 -0.6954 1.1217 31 1 4.9499 -1.1805 -0.5908 32 1 4.4673 -3.0808 1.7467 33 1 6.0256 -2.8846 0.9091 34 1 4.0406 -3.4388 -1.0220 35 1 3.8784 -5.6218 -1.8329 36 1 4.1221 -7.7445 0.0141 37 1 5.6802 -7.5486 -0.8241 38 1 5.8694 -7.9617 -3.2071 39 1 4.9784 -9.1723 -5.1556 40 1 1.4906 -12.1998 -8.2242 41 1 1.2324 -9.6330 -3.1451 42 1 2.1358 -8.4297 -1.1977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784264147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:43 Heat of formation + Delta-G solvation = -20.631250 kcal Electronic energy + Delta-G solvation = -24388.949625 eV Core-core repulsion = 20529.876261 eV Total energy + Delta-G solvation = -3859.073364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.99972 -39.10084 -38.59535 -36.89754 -35.08641 -34.27378 -33.49972 -32.36089 -30.53055 -30.23888 -29.16217 -27.13507 -25.82174 -24.65680 -22.85488 -22.03544 -20.93209 -20.59533 -18.96668 -18.41097 -18.04782 -17.35728 -17.03152 -16.81200 -16.07504 -15.50741 -15.32733 -14.80786 -14.67288 -14.46064 -14.38604 -13.88084 -13.70909 -13.60160 -13.41605 -13.03457 -12.76621 -12.75877 -12.58453 -12.08280 -11.87422 -11.66047 -11.37784 -10.98508 -10.94802 -10.93196 -10.77114 -10.68748 -10.49417 -10.18901 -10.04936 -9.42132 -9.28266 -8.90178 -8.71553 -8.26645 -7.31623 -6.52069 -4.11018 2.04606 2.06917 2.14788 2.39495 2.87666 3.09182 3.11040 3.13263 3.28947 3.42798 3.91046 4.05997 4.28545 4.52343 4.58886 4.69977 4.72536 4.86578 4.92721 5.02414 5.18251 5.26925 5.33522 5.47388 5.49499 5.55416 5.69205 5.84668 5.96783 6.13758 6.35739 6.37294 6.58976 6.60658 6.65014 6.82131 6.91956 7.01427 7.15803 7.17553 7.29639 7.36403 7.73200 7.92551 8.08801 8.66944 8.93113 9.61593 10.65408 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002042 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.718837 B =13708.858994 C =14553.418317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.143 3.857 7 N -0.746 5.746 8 C 0.702 3.298 9 O -0.599 6.599 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.213 4.213 13 C -0.050 4.050 14 C -0.238 4.238 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.196 4.196 26 C -0.053 4.053 27 H 0.222 0.778 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.399 0.601 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.272 0.728 41 H 0.118 0.882 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 21.573 12.071 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.098 3.902 4 O -0.299 6.299 5 C -0.027 4.027 6 C 0.019 3.981 7 N -0.403 5.403 8 C 0.401 3.599 9 O -0.478 6.478 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.215 4.215 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.215 4.215 26 C -0.072 4.072 27 H 0.239 0.761 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.823 20.777 12.817 24.710 hybrid contribution 0.116 0.354 -1.576 1.620 sum 3.939 21.132 11.240 24.257 Atomic orbital electron populations 1.25033 0.95984 0.97357 1.00183 1.22492 0.93911 1.02405 1.01116 1.19066 0.84875 0.85941 1.00320 1.88031 1.21170 1.30360 1.90319 1.22862 0.81161 0.97305 1.01420 1.21164 0.99831 0.85362 0.91786 1.45021 1.64449 1.05386 1.25477 1.16000 0.79671 0.80790 0.83395 1.90903 1.48013 1.77796 1.31130 1.45493 1.62864 1.07382 1.23514 1.19820 0.99731 0.77098 0.95844 1.19231 0.95903 1.09369 0.96988 1.20647 0.98053 0.95957 0.92251 1.21157 0.96982 1.06937 1.00620 1.19443 0.91647 0.90566 0.87784 1.83977 1.37302 1.63016 1.23312 1.21305 0.94711 1.33351 0.97607 0.88982 1.25319 0.97133 0.95662 0.98373 1.70025 1.16285 1.32143 1.30949 0.85763 0.79250 0.78893 0.79441 1.19422 1.20224 1.19457 1.20215 1.00536 1.07692 0.93051 1.20549 0.94171 0.95779 0.96720 0.76122 0.90770 0.90698 0.91124 0.92078 0.90749 0.89913 0.76757 0.76891 0.91747 0.91780 0.87386 0.85449 0.91838 0.86391 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.20 -1.72 13.73 -37.12 -0.51 -2.23 16 3 C 0.17 1.12 6.41 34.37 0.22 1.34 16 4 O -0.38 -3.17 10.25 -35.23 -0.36 -3.53 16 5 C 0.05 0.28 6.07 37.16 0.23 0.51 16 6 C 0.14 1.22 6.06 -4.04 -0.02 1.19 16 7 N -0.75 -7.68 5.51 -65.23 -0.36 -8.03 16 8 C 0.70 9.78 8.57 -86.92 -0.74 9.04 16 9 O -0.60 -10.62 16.34 5.29 0.09 -10.53 16 10 N -0.74 -9.65 5.55 -66.42 -0.37 -10.02 16 11 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 12 C -0.21 -3.47 5.25 -104.58 -0.55 -4.02 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 15 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.17 -4.83 9.76 0.05 0.00 -4.83 16 17 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 21 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.20 -3.98 9.99 -39.39 -0.39 -4.37 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 28 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.40 3.37 8.49 -40.82 -0.35 3.02 16 35 H 0.40 4.60 8.48 -40.82 -0.35 4.25 16 36 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -34.17 376.37 -7.49 -41.66 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.46 Total: 8.82 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.43 Total: -10.26 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.03 Total: -42.04 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.27 Total: -18.89 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.17 -7.49 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784264147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.025 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds