Wall clock time and date at job start Tue Mar 31 2020 12:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47618 * 344.18505 * 3 2 1 5 5 C 1.42897 * 114.00270 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46897 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46843 * 65.01107 * 6 5 4 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 4.38449 * 5.44419 * 180.02562 * 4 1 2 28 28 H 1.09009 * 109.46877 * 224.19107 * 3 2 1 29 29 H 1.09001 * 109.47263 * 104.19273 * 3 2 1 30 30 H 1.09005 * 109.46903 * 60.00947 * 5 4 3 31 31 H 1.08994 * 109.47607 * 300.00915 * 5 4 3 32 32 H 1.08994 * 109.47328 * 305.00327 * 6 5 4 33 33 H 1.09002 * 109.46440 * 185.00219 * 6 5 4 34 34 H 0.96996 * 120.00042 * 359.97438 * 7 6 5 35 35 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 37 37 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2953 0.3672 5 6 4.5476 -1.4034 0.3973 6 6 4.9427 -2.8257 0.7996 7 7 4.5048 -3.7654 -0.2355 8 6 4.7460 -5.0839 -0.0943 9 8 5.3274 -5.4933 0.8919 10 7 4.3426 -5.9484 -1.0462 11 6 4.6053 -7.3816 -0.8931 12 6 4.0568 -8.1229 -2.0849 13 6 4.8544 -8.3306 -3.1954 14 6 4.3549 -9.0101 -4.2890 15 6 3.0497 -9.4847 -4.2729 16 8 2.5560 -10.1534 -5.3461 17 6 3.4169 -10.4240 -6.3479 18 1 4.4259 -10.0408 -6.3111 19 6 3.0067 -11.1942 -7.4255 20 7 1.7777 -11.6614 -7.4702 21 14 4.1996 -11.5696 -8.8130 22 1 5.3720 -12.3037 -8.2729 23 1 3.5215 -12.4052 -9.8364 24 1 4.6539 -10.2988 -9.4326 25 6 2.2492 -9.2691 -3.1588 26 6 2.7565 -8.5938 -2.0661 27 1 -1.0498 -0.0005 -0.0001 28 1 3.0090 0.7377 0.7164 29 1 3.0092 0.2528 -0.9963 30 1 4.9503 -0.6954 1.1217 31 1 4.9499 -1.1805 -0.5908 32 1 4.4673 -3.0808 1.7467 33 1 6.0256 -2.8846 0.9091 34 1 4.0406 -3.4388 -1.0220 35 1 3.8784 -5.6218 -1.8329 36 1 4.1221 -7.7445 0.0141 37 1 5.6802 -7.5486 -0.8241 38 1 5.8694 -7.9617 -3.2071 39 1 4.9784 -9.1723 -5.1556 40 1 1.4906 -12.1998 -8.2242 41 1 1.2324 -9.6330 -3.1451 42 1 2.1358 -8.4297 -1.1977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784264147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:42 Heat of formation + Delta-G solvation = -45.341315 kcal Electronic energy + Delta-G solvation = -24390.021134 eV Core-core repulsion = 20529.876261 eV Total energy + Delta-G solvation = -3860.144873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13927 -40.66823 -39.19549 -38.50767 -35.97383 -35.52743 -34.28035 -34.07656 -31.86020 -31.64328 -30.14687 -27.78407 -27.48884 -26.08359 -23.64030 -23.53762 -22.18106 -21.90790 -19.89420 -19.63552 -19.26528 -18.80517 -17.90227 -17.54383 -16.82641 -16.68621 -16.36158 -16.17493 -16.03575 -15.85766 -15.56109 -15.28642 -15.11338 -14.88834 -14.44771 -14.36593 -14.10382 -13.67798 -13.52552 -13.30779 -13.18264 -13.00839 -12.52838 -12.45879 -12.36690 -12.22972 -12.13081 -11.56217 -11.49573 -11.33841 -11.19987 -10.79533 -10.51978 -10.33990 -9.81522 -9.69819 -9.01440 -8.47748 -6.16055 0.53525 0.58302 1.36100 1.45796 1.51846 1.52072 1.83021 1.87386 2.17697 2.20755 2.81212 2.93166 3.13801 3.47164 3.50701 3.60098 3.89396 4.02225 4.04456 4.18244 4.24722 4.33863 4.47929 4.49319 4.55736 4.57615 4.70036 4.75934 4.81502 4.91849 5.04509 5.04976 5.14832 5.27422 5.48690 5.53147 5.55446 5.69352 5.76554 6.01700 6.03806 6.15391 6.16923 6.60896 6.96826 7.12064 7.61866 7.76197 8.74839 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002042 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.718837 B =13708.858994 C =14553.418317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.234 4.234 3 C 0.169 3.831 4 O -0.407 6.407 5 C 0.055 3.945 6 C 0.139 3.861 7 N -0.733 5.733 8 C 0.699 3.301 9 O -0.638 6.638 10 N -0.732 5.732 11 C 0.204 3.796 12 C -0.181 4.181 13 C -0.044 4.044 14 C -0.243 4.243 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.205 4.205 26 C -0.044 4.044 27 H 0.245 0.755 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.409 0.591 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.122 0.878 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 23.965 13.138 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.234 4.234 3 C 0.094 3.906 4 O -0.328 6.328 5 C -0.021 4.021 6 C 0.015 3.985 7 N -0.390 5.390 8 C 0.399 3.601 9 O -0.520 6.520 10 N -0.387 5.387 11 C 0.080 3.920 12 C -0.182 4.182 13 C -0.062 4.062 14 C -0.263 4.263 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.180 1.180 25 C -0.224 4.224 26 C -0.062 4.062 27 H 0.262 0.738 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.245 0.755 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.719 23.246 13.912 27.688 hybrid contribution -0.448 -0.158 -1.540 1.612 sum 5.271 23.088 12.372 26.718 Atomic orbital electron populations 1.25834 0.97052 0.96711 0.99750 1.23312 0.95292 1.03081 1.01699 1.19303 0.83816 0.85583 1.01909 1.87972 1.22506 1.31593 1.90707 1.22905 0.80259 0.95707 1.03234 1.21318 1.00059 0.86574 0.90586 1.44992 1.63530 1.04354 1.26112 1.16126 0.79393 0.81772 0.82821 1.90883 1.49836 1.78657 1.32674 1.45244 1.62924 1.06713 1.23842 1.19703 0.99947 0.77708 0.94598 1.19493 0.95061 1.06852 0.96819 1.20945 0.99553 0.94626 0.91121 1.21251 0.96020 1.07311 1.01680 1.19991 0.93427 0.91461 0.87979 1.83948 1.38647 1.65922 1.24973 1.21800 0.95355 1.33759 0.98095 0.87860 1.26600 0.99093 0.95262 1.01088 1.70174 1.18780 1.34367 1.32360 0.84651 0.76775 0.79172 0.75670 1.18231 1.19781 1.18015 1.20437 1.00469 1.08207 0.93318 1.20875 0.94843 0.94091 0.96417 0.73838 0.88804 0.88915 0.88646 0.90119 0.92615 0.89303 0.75505 0.75796 0.91446 0.91276 0.84186 0.86059 0.91805 0.86738 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 19.25 74.32 1.43 -1.08 16 2 C -0.23 -3.75 13.73 31.13 0.43 -3.33 16 3 C 0.17 1.81 6.41 70.18 0.45 2.26 16 4 O -0.41 -5.90 10.25 -148.98 -1.53 -7.43 16 5 C 0.05 0.47 6.07 71.98 0.44 0.91 16 6 C 0.14 2.06 6.06 86.38 0.52 2.59 16 7 N -0.73 -13.28 5.51 -478.54 -2.64 -15.91 16 8 C 0.70 17.77 8.57 179.06 1.53 19.30 16 9 O -0.64 -21.42 16.34 -3.98 -0.07 -21.48 16 10 N -0.73 -16.80 5.55 -482.31 -2.68 -19.48 16 11 C 0.20 5.20 5.80 85.63 0.50 5.70 16 12 C -0.18 -5.32 5.25 -19.84 -0.10 -5.42 16 13 C -0.04 -1.41 9.69 22.25 0.22 -1.20 16 14 C -0.24 -10.03 9.17 22.39 0.21 -9.83 16 15 C 0.12 5.86 6.65 22.58 0.15 6.01 16 16 O -0.23 -13.44 9.76 -22.72 -0.22 -13.66 16 17 C -0.41 -23.54 9.49 67.92 0.64 -22.90 16 18 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 19 C -0.02 -1.26 5.49 84.84 0.47 -0.80 16 20 N -0.92 -55.65 13.67 21.62 0.30 -55.36 16 21 Si 1.02 41.96 29.55 68.60 2.03 43.99 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 C -0.21 -8.35 9.99 22.39 0.22 -8.13 16 26 C -0.04 -1.39 9.69 22.25 0.22 -1.18 16 27 H 0.25 1.71 7.80 -4.43 -0.03 1.67 16 28 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.41 5.75 8.49 -92.71 -0.79 4.96 16 35 H 0.41 8.00 8.48 -92.71 -0.79 7.22 16 36 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 37 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -78.77 376.37 2.00 -76.78 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.51 Total: 29.64 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 7.32 Total: -17.09 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -5.02 Total: -90.75 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.81 Total: -42.57 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -78.77 2.00 -76.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784264147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.436 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds