Wall clock time and date at job start Tue Mar 31 2020 13:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46869 * 2 1 4 4 C 1.34938 * 116.99891 * 179.97438 * 3 2 1 5 5 O 1.21655 * 119.99897 * 359.97438 * 4 3 2 6 6 C 1.41760 * 120.00349 * 179.97438 * 4 3 2 7 7 C 1.35109 * 120.00417 * 180.02562 * 6 4 3 8 8 C 1.46931 * 120.00284 * 179.97438 * 7 6 4 9 9 C 1.40020 * 120.10084 * 179.97438 * 8 7 6 10 10 C 1.37606 * 119.89451 * 180.02562 * 9 8 7 11 11 C 1.39170 * 120.10657 * 0.25128 * 10 9 8 12 12 N 1.39461 * 119.90163 * 179.74978 * 11 10 9 13 13 C 1.34780 * 119.99903 * 33.53732 * 12 11 10 14 14 O 1.21580 * 119.99915 * 5.31901 * 13 12 11 15 15 N 1.34775 * 119.99710 * 185.32523 * 13 12 11 16 16 C 1.46494 * 119.99856 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47528 * 89.99647 * 21 19 17 23 23 H 1.48496 * 109.47363 * 210.00127 * 21 19 17 24 24 H 1.48503 * 109.46821 * 329.99576 * 21 19 17 25 25 C 1.39174 * 120.19723 * 359.49159 * 11 10 9 26 26 C 1.37606 * 120.10601 * 0.51253 * 25 11 10 27 27 H 1.09000 * 109.46964 * 60.00759 * 1 2 3 28 28 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47526 * 300.00207 * 1 2 3 30 30 H 1.08999 * 109.47494 * 239.99342 * 2 1 3 31 31 H 1.09004 * 109.46960 * 119.99742 * 2 1 3 32 32 H 1.07999 * 119.99817 * 359.97438 * 6 4 3 33 33 H 1.07999 * 119.99766 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.05204 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.94692 * 179.97438 * 10 9 8 36 36 H 0.97004 * 119.99884 * 213.53488 * 12 11 10 37 37 H 0.97004 * 119.99953 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47615 * 299.99910 * 16 15 13 39 39 H 1.09008 * 109.47176 * 59.99556 * 16 15 13 40 40 H 0.97007 * 119.99779 * 179.97438 * 20 19 17 41 41 H 1.07999 * 119.95054 * 180.26029 * 25 11 10 42 42 H 1.07997 * 120.05452 * 179.76882 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5241 0.0005 5 8 4.0851 0.5593 0.0015 6 6 3.8859 2.8341 0.0000 7 6 5.2253 3.0111 0.0000 8 6 5.7869 4.3689 -0.0011 9 6 7.1747 4.5548 -0.0005 10 6 7.6961 5.8282 -0.0010 11 6 6.8465 6.9304 0.0032 12 7 7.3795 8.2191 0.0080 13 6 8.5361 8.4724 -0.6361 14 8 9.0645 7.6026 -1.3013 15 7 9.1067 9.6898 -0.5427 16 6 10.3641 9.9649 -1.2423 17 6 10.7856 11.3873 -0.9773 18 1 10.1779 12.0226 -0.3501 19 6 11.9476 11.8772 -1.5347 20 7 12.6884 11.1031 -2.2972 21 14 12.4705 13.6401 -1.2056 22 1 13.3270 13.6844 0.0067 23 1 13.2340 14.1556 -2.3702 24 1 11.2659 14.4819 -0.9917 25 6 5.4664 6.7505 -0.0027 26 6 4.9359 5.4808 -0.0021 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2280 3.6905 -0.0012 33 1 5.8832 2.1546 0.0009 34 1 7.8349 3.7000 0.0003 35 1 8.7665 5.9726 -0.0002 36 1 6.9178 8.9332 0.4748 37 1 8.6849 10.3838 -0.0123 38 1 11.1361 9.2840 -0.8836 39 1 10.2227 9.8218 -2.3137 40 1 13.5058 11.4479 -2.6897 41 1 4.8108 7.6087 -0.0037 42 1 3.8649 5.3421 -0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785692832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:46 Heat of formation + Delta-G solvation = -77.811888 kcal Electronic energy + Delta-G solvation = -24172.413112 eV Core-core repulsion = 20310.860210 eV Total energy + Delta-G solvation = -3861.552902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.81273 -40.37186 -38.69957 -37.13578 -35.37095 -34.27950 -33.38670 -32.38162 -31.97135 -31.13954 -29.18996 -27.19141 -25.20891 -23.62134 -22.90965 -22.67735 -21.60812 -20.51985 -19.62461 -18.47070 -18.18678 -17.66251 -16.89926 -16.70993 -16.04766 -15.74830 -15.22283 -14.99105 -14.69048 -14.44147 -14.26746 -14.03739 -13.86330 -13.46202 -13.29756 -13.15438 -13.01575 -12.53359 -12.36621 -12.10409 -12.06935 -11.99701 -11.89361 -11.28377 -11.03234 -10.97724 -10.81862 -10.79251 -10.77097 -10.37901 -9.74380 -9.57746 -9.47038 -9.03842 -8.82807 -8.12908 -7.73769 -6.23117 -4.30620 0.15962 1.35289 1.64986 2.57798 2.82794 3.01196 3.20227 3.27069 3.29198 3.53098 3.91131 4.25941 4.43703 4.55112 4.56020 4.63798 4.73336 4.83044 4.89951 4.92492 4.98931 5.13412 5.22275 5.29702 5.32563 5.38647 5.51699 5.57681 5.82846 5.86653 5.90950 6.18313 6.26322 6.27242 6.44867 6.53028 6.90404 7.01315 7.27835 7.40348 7.43424 7.56890 7.71665 7.90541 8.57391 8.73825 9.05425 9.36342 10.86939 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.054716 B = 0.001637 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.606221 B =17102.189604 C =17435.460802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.505 3.495 5 O -0.523 6.523 6 C -0.238 4.238 7 C 0.038 3.962 8 C -0.130 4.130 9 C -0.059 4.059 10 C -0.131 4.131 11 C 0.211 3.789 12 N -0.694 5.694 13 C 0.688 3.312 14 O -0.578 6.578 15 N -0.719 5.719 16 C 0.265 3.735 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.165 4.165 26 C -0.066 4.066 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.406 0.594 37 H 0.389 0.611 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.267 0.733 41 H 0.129 0.871 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.280 -15.257 7.454 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.354 3.646 5 O -0.415 6.415 6 C -0.257 4.257 7 C 0.019 3.981 8 C -0.131 4.131 9 C -0.078 4.078 10 C -0.152 4.152 11 C 0.113 3.887 12 N -0.341 5.341 13 C 0.389 3.611 14 O -0.456 6.456 15 N -0.370 5.370 16 C 0.144 3.856 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.186 4.186 26 C -0.084 4.084 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.241 0.759 37 H 0.222 0.778 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.294 -16.230 6.691 27.597 hybrid contribution -0.067 1.551 0.523 1.638 sum -21.361 -14.679 7.214 26.904 Atomic orbital electron populations 1.21809 0.92640 1.02937 1.03523 1.22608 0.95379 0.80942 1.02431 1.86206 1.24448 1.31968 1.84489 1.19979 0.80480 0.90812 0.73339 1.90884 1.60079 1.43407 1.47083 1.21117 0.96207 0.94802 1.13567 1.22564 0.94600 0.96163 0.84790 1.18825 0.93623 0.91994 1.08632 1.21265 0.93585 0.97225 0.95751 1.21261 1.01487 0.90844 1.01581 1.17808 0.91789 0.84457 0.94664 1.42880 1.25361 1.09550 1.56327 1.16183 0.80067 0.84505 0.80380 1.90912 1.64090 1.45757 1.44806 1.45816 1.27442 1.10489 1.53290 1.19090 0.78098 0.96155 0.92243 1.21190 1.08398 0.96533 1.32294 0.91851 1.24939 0.95983 0.98373 0.94620 1.69973 1.14492 1.36167 1.31460 0.86390 0.78734 0.83680 0.77952 1.20424 1.20950 1.19754 1.20805 0.93023 0.97909 1.06886 1.21141 0.99455 0.91209 0.96617 0.91463 0.90334 0.91491 0.91541 0.91563 0.84269 0.84539 0.85107 0.83747 0.75913 0.77799 0.95380 0.95408 0.92345 0.85282 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.47 6.10 37.16 0.23 0.70 16 3 O -0.35 -3.51 10.10 -41.15 -0.42 -3.92 16 4 C 0.50 5.61 7.70 32.08 0.25 5.85 16 5 O -0.52 -7.11 15.88 -19.38 -0.31 -7.41 16 6 C -0.24 -2.23 9.33 -39.35 -0.37 -2.60 16 7 C 0.04 0.36 9.41 -37.18 -0.35 0.01 16 8 C -0.13 -1.37 5.87 -105.04 -0.62 -1.98 16 9 C -0.06 -0.70 9.78 -39.14 -0.38 -1.08 16 10 C -0.13 -1.88 8.62 -39.47 -0.34 -2.22 16 11 C 0.21 2.84 6.28 -83.69 -0.53 2.32 16 12 N -0.69 -9.68 5.32 -14.20 -0.08 -9.75 16 13 C 0.69 13.17 8.29 -86.92 -0.72 12.45 16 14 O -0.58 -13.36 14.02 5.29 0.07 -13.29 16 15 N -0.72 -14.29 5.55 -66.41 -0.37 -14.66 16 16 C 0.26 6.76 5.43 -5.19 -0.03 6.73 16 17 C -0.55 -14.30 9.28 -34.44 -0.32 -14.62 16 18 H 0.06 1.54 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 21 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 C -0.17 -1.74 9.94 -39.46 -0.39 -2.14 16 26 C -0.07 -0.63 9.40 -39.14 -0.37 -1.00 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.14 1.03 6.07 -52.49 -0.32 0.71 16 33 H 0.14 1.30 7.45 -52.49 -0.39 0.90 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 2.41 6.41 -52.48 -0.34 2.07 16 36 H 0.41 4.14 8.83 -40.82 -0.36 3.78 16 37 H 0.39 6.45 8.34 -40.82 -0.34 6.11 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 0.92 6.16 -52.49 -0.32 0.60 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.34 368.43 -8.89 -42.23 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.41 Total: 6.97 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -3.65 Total: 3.69 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.29 Total: -49.10 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.65 Total: -24.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.34 -8.89 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785692832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.585 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds