Wall clock time and date at job start Tue Mar 31 2020 13:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46869 * 2 1 4 4 C 1.34938 * 116.99891 * 179.97438 * 3 2 1 5 5 O 1.21655 * 119.99897 * 359.97438 * 4 3 2 6 6 C 1.41760 * 120.00349 * 179.97438 * 4 3 2 7 7 C 1.35109 * 120.00417 * 180.02562 * 6 4 3 8 8 C 1.46931 * 120.00284 * 179.97438 * 7 6 4 9 9 C 1.40020 * 120.10084 * 179.97438 * 8 7 6 10 10 C 1.37606 * 119.89451 * 180.02562 * 9 8 7 11 11 C 1.39170 * 120.10657 * 0.25128 * 10 9 8 12 12 N 1.39461 * 119.90163 * 179.74978 * 11 10 9 13 13 C 1.34780 * 119.99903 * 33.53732 * 12 11 10 14 14 O 1.21580 * 119.99915 * 5.31901 * 13 12 11 15 15 N 1.34775 * 119.99710 * 185.32523 * 13 12 11 16 16 C 1.46494 * 119.99856 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99778 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47528 * 89.99647 * 21 19 17 23 23 H 1.48496 * 109.47363 * 210.00127 * 21 19 17 24 24 H 1.48503 * 109.46821 * 329.99576 * 21 19 17 25 25 C 1.39174 * 120.19723 * 359.49159 * 11 10 9 26 26 C 1.37606 * 120.10601 * 0.51253 * 25 11 10 27 27 H 1.09000 * 109.46964 * 60.00759 * 1 2 3 28 28 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47526 * 300.00207 * 1 2 3 30 30 H 1.08999 * 109.47494 * 239.99342 * 2 1 3 31 31 H 1.09004 * 109.46960 * 119.99742 * 2 1 3 32 32 H 1.07999 * 119.99817 * 359.97438 * 6 4 3 33 33 H 1.07999 * 119.99766 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.05204 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.94692 * 179.97438 * 10 9 8 36 36 H 0.97004 * 119.99884 * 213.53488 * 12 11 10 37 37 H 0.97004 * 119.99953 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47615 * 299.99910 * 16 15 13 39 39 H 1.09008 * 109.47176 * 59.99556 * 16 15 13 40 40 H 0.97007 * 119.99779 * 179.97438 * 20 19 17 41 41 H 1.07999 * 119.95054 * 180.26029 * 25 11 10 42 42 H 1.07997 * 120.05452 * 179.76882 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5241 0.0005 5 8 4.0851 0.5593 0.0015 6 6 3.8859 2.8341 0.0000 7 6 5.2253 3.0111 0.0000 8 6 5.7869 4.3689 -0.0011 9 6 7.1747 4.5548 -0.0005 10 6 7.6961 5.8282 -0.0010 11 6 6.8465 6.9304 0.0032 12 7 7.3795 8.2191 0.0080 13 6 8.5361 8.4724 -0.6361 14 8 9.0645 7.6026 -1.3013 15 7 9.1067 9.6898 -0.5427 16 6 10.3641 9.9649 -1.2423 17 6 10.7856 11.3873 -0.9773 18 1 10.1779 12.0226 -0.3501 19 6 11.9476 11.8772 -1.5347 20 7 12.6884 11.1031 -2.2972 21 14 12.4705 13.6401 -1.2056 22 1 13.3270 13.6844 0.0067 23 1 13.2340 14.1556 -2.3702 24 1 11.2659 14.4819 -0.9917 25 6 5.4664 6.7505 -0.0027 26 6 4.9359 5.4808 -0.0021 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2280 3.6905 -0.0012 33 1 5.8832 2.1546 0.0009 34 1 7.8349 3.7000 0.0003 35 1 8.7665 5.9726 -0.0002 36 1 6.9178 8.9332 0.4748 37 1 8.6849 10.3838 -0.0123 38 1 11.1361 9.2840 -0.8836 39 1 10.2227 9.8218 -2.3137 40 1 13.5058 11.4479 -2.6897 41 1 4.8108 7.6087 -0.0037 42 1 3.8649 5.3421 -0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785692832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:45 Heat of formation + Delta-G solvation = -99.319901 kcal Electronic energy + Delta-G solvation = -24173.345769 eV Core-core repulsion = 20310.860210 eV Total energy + Delta-G solvation = -3862.485560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73102 -41.56356 -39.85180 -37.97156 -36.62543 -36.02004 -34.63845 -34.05322 -32.56554 -32.04207 -30.32177 -28.94250 -26.17718 -24.86248 -24.12915 -23.62013 -22.60594 -21.93747 -20.56070 -19.87528 -19.11863 -18.81791 -18.00905 -17.64825 -17.47974 -16.92941 -16.65285 -16.38974 -16.03417 -15.57271 -15.18576 -15.12666 -14.86021 -14.65084 -14.45343 -14.13335 -14.03685 -13.85185 -13.65271 -13.26725 -12.96699 -12.93632 -12.90253 -12.72764 -12.47711 -12.24310 -12.20949 -11.83692 -11.64956 -11.48563 -11.47112 -11.26746 -10.81195 -10.67041 -9.96177 -9.90218 -8.80413 -8.29003 -6.45451 -0.69806 0.45769 0.71611 1.44235 1.46734 1.57222 1.69006 1.85634 1.94133 2.16853 2.39005 2.91256 3.06700 3.36732 3.65537 3.77296 3.97838 4.02352 4.09262 4.13631 4.21972 4.35101 4.37285 4.42496 4.57122 4.78743 4.94380 4.98816 5.01100 5.08341 5.09255 5.16935 5.24582 5.31285 5.35482 5.43116 5.47738 5.50953 5.59029 5.64386 5.82114 5.99449 6.15346 6.65413 6.74364 7.13580 7.24953 7.55754 8.83071 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.054716 B = 0.001637 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.606221 B =17102.189604 C =17435.460802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.502 3.498 5 O -0.554 6.554 6 C -0.226 4.226 7 C 0.034 3.966 8 C -0.120 4.120 9 C -0.068 4.068 10 C -0.157 4.157 11 C 0.180 3.820 12 N -0.672 5.672 13 C 0.690 3.310 14 O -0.624 6.624 15 N -0.713 5.713 16 C 0.284 3.716 17 C -0.556 4.556 18 H 0.086 0.914 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.985 3.015 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.255 1.255 25 C -0.149 4.149 26 C -0.060 4.060 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.167 0.833 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.426 0.574 37 H 0.408 0.592 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.269 0.731 41 H 0.162 0.838 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.714 -14.154 8.661 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.352 3.648 5 O -0.449 6.449 6 C -0.244 4.244 7 C 0.015 3.985 8 C -0.121 4.121 9 C -0.086 4.086 10 C -0.177 4.177 11 C 0.083 3.917 12 N -0.321 5.321 13 C 0.390 3.610 14 O -0.505 6.505 15 N -0.367 5.367 16 C 0.160 3.840 17 C -0.594 4.594 18 H 0.104 0.896 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.178 1.178 25 C -0.170 4.170 26 C -0.078 4.078 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.184 0.816 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.126 0.874 36 H 0.265 0.735 37 H 0.244 0.756 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.180 0.820 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.829 -15.124 7.957 30.142 hybrid contribution 0.851 0.979 0.162 1.307 sum -23.978 -14.145 8.119 28.999 Atomic orbital electron populations 1.21822 0.90358 1.04311 1.03771 1.22870 0.97176 0.79994 1.02226 1.86209 1.23649 1.33207 1.84006 1.20319 0.80769 0.91079 0.72592 1.90877 1.60826 1.44559 1.48597 1.21290 0.96225 0.94839 1.12056 1.22483 0.94935 0.95623 0.85416 1.18941 0.93014 0.92892 1.07284 1.21373 0.94810 0.96559 0.95873 1.21116 1.00097 0.92666 1.03856 1.18064 0.93155 0.83473 0.96990 1.42439 1.23511 1.10701 1.55429 1.16281 0.81072 0.83456 0.80171 1.90887 1.65758 1.46989 1.46826 1.45334 1.26195 1.11649 1.53488 1.18487 0.79468 0.95670 0.90326 1.21596 1.08787 0.96694 1.32290 0.89639 1.26033 0.95976 1.03329 0.94095 1.70139 1.15150 1.38684 1.32864 0.85155 0.78734 0.77635 0.77674 1.19702 1.21088 1.17850 1.21112 0.91587 0.99548 1.04723 1.21574 1.01140 0.90238 0.94845 0.91249 0.88439 0.91137 0.91890 0.91743 0.81566 0.84890 0.84147 0.87351 0.73519 0.75594 0.99259 0.99274 0.92252 0.82012 0.81418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.05 0.72 6.10 71.98 0.44 1.16 16 3 O -0.35 -6.32 10.10 -58.54 -0.59 -6.91 16 4 C 0.50 10.30 7.70 68.69 0.53 10.83 16 5 O -0.55 -14.73 15.88 19.33 0.31 -14.42 16 6 C -0.23 -3.58 9.33 22.42 0.21 -3.37 16 7 C 0.03 0.60 9.41 23.83 0.22 0.82 16 8 C -0.12 -2.30 5.87 -20.14 -0.12 -2.42 16 9 C -0.07 -1.60 9.78 22.55 0.22 -1.38 16 10 C -0.16 -4.69 8.62 22.34 0.19 -4.50 16 11 C 0.18 4.72 6.28 38.38 0.24 4.96 16 12 N -0.67 -18.40 5.32 -317.09 -1.69 -20.09 16 13 C 0.69 27.29 8.29 179.05 1.48 28.77 16 14 O -0.62 -30.72 14.02 -3.97 -0.06 -30.78 16 15 N -0.71 -29.03 5.55 -482.30 -2.68 -31.71 16 16 C 0.28 15.19 5.43 85.64 0.46 15.66 16 17 C -0.56 -29.38 9.28 25.60 0.24 -29.15 16 18 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 21 Si 0.98 41.38 29.54 68.60 2.03 43.40 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 25 C -0.15 -2.67 9.94 22.35 0.22 -2.45 16 26 C -0.06 -0.93 9.40 22.55 0.21 -0.72 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 32 H 0.17 1.67 6.07 -2.91 -0.02 1.65 16 33 H 0.13 2.43 7.45 -2.91 -0.02 2.41 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.11 4.00 6.41 -2.91 -0.02 3.99 16 36 H 0.43 7.89 8.83 -92.71 -0.82 7.07 16 37 H 0.41 13.26 8.34 -92.71 -0.77 12.49 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 40 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.17 1.38 6.16 -2.91 -0.02 1.37 16 Total: -1.00 -76.83 368.43 2.84 -73.99 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.52 Total: 22.89 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.76 Total: 18.58 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.08 Total: -106.75 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.34 Total: -52.11 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -76.83 2.84 -73.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785692832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.333 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds