Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47002 * 2 1 4 4 C 1.34934 * 116.99711 * 180.02562 * 3 2 1 5 5 O 1.21644 * 120.00447 * 359.97438 * 4 3 2 6 6 C 1.41771 * 119.99739 * 179.97438 * 4 3 2 7 7 C 1.35112 * 119.99966 * 173.61533 * 6 4 3 8 8 C 1.46935 * 119.99983 * 348.08622 * 7 6 4 9 9 C 1.40014 * 120.09864 * 316.03396 * 8 7 6 10 10 C 1.37610 * 119.89477 * 179.75979 * 9 8 7 11 11 C 1.39176 * 120.09908 * 0.49450 * 10 9 8 12 12 N 1.39470 * 119.89792 * 179.73949 * 11 10 9 13 13 C 1.34771 * 119.99966 * 207.29941 * 12 11 10 14 14 O 1.21578 * 120.00376 * 5.52142 * 13 12 11 15 15 N 1.34772 * 119.99985 * 185.51741 * 13 12 11 16 16 C 1.46501 * 120.00372 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47351 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00396 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00249 * 180.02562 * 17 16 15 20 20 N 1.31502 * 120.00446 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99491 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46829 * 89.99906 * 21 19 17 23 23 H 1.48499 * 109.46924 * 209.99803 * 21 19 17 24 24 H 1.48499 * 109.47191 * 329.99948 * 21 19 17 25 25 C 1.39176 * 120.20463 * 359.75471 * 11 10 9 26 26 C 1.37603 * 120.09771 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47120 * 300.00188 * 1 2 3 29 29 H 1.09007 * 109.46980 * 60.00509 * 1 2 3 30 30 H 1.08996 * 109.47120 * 239.99812 * 2 1 3 31 31 H 1.08995 * 109.47011 * 119.99900 * 2 1 3 32 32 H 1.07997 * 120.00071 * 353.62033 * 6 4 3 33 33 H 1.07996 * 120.00192 * 168.08422 * 7 6 4 34 34 H 1.07997 * 120.05830 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.94966 * 180.22672 * 10 9 8 36 36 H 0.97006 * 119.99465 * 27.30025 * 12 11 10 37 37 H 0.97007 * 120.00269 * 0.02562 * 15 13 12 38 38 H 1.08997 * 109.47083 * 300.00233 * 16 15 13 39 39 H 1.09008 * 109.46635 * 59.99895 * 16 15 13 40 40 H 0.96998 * 120.00609 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.94734 * 179.97438 * 25 11 10 42 42 H 1.07999 * 120.04677 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3441 1.5240 -0.0005 5 8 4.0851 0.5594 -0.0005 6 6 3.8859 2.8341 -0.0011 7 6 5.2187 3.0140 0.1285 8 6 6.0762 1.8901 0.5295 9 6 5.6800 1.0412 1.5701 10 6 6.4839 -0.0130 1.9390 11 6 7.6939 -0.2297 1.2863 12 7 8.5080 -1.2962 1.6672 13 6 9.8410 -1.2262 1.4817 14 8 10.3452 -0.1968 1.0763 15 7 10.6153 -2.2972 1.7457 16 6 12.0643 -2.2213 1.5436 17 6 12.6923 -3.5418 1.9082 18 1 12.0738 -4.3563 2.2555 19 6 14.0564 -3.7102 1.7987 20 7 14.6043 -4.8626 2.1164 21 14 15.1261 -2.3011 1.1987 22 1 15.5699 -1.4877 2.3593 23 1 16.3137 -2.8467 0.4936 24 1 14.3452 -1.4488 0.2666 25 6 8.0942 0.6146 0.2549 26 6 7.2946 1.6686 -0.1237 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2334 3.6883 -0.1051 33 1 5.6539 3.9837 -0.0628 34 1 4.7434 1.2113 2.0801 35 1 6.1775 -0.6705 2.7390 36 1 8.1146 -2.0884 2.0657 37 1 10.2131 -3.1187 2.0690 38 1 12.2740 -1.9962 0.4979 39 1 12.4785 -1.4349 2.1747 40 1 15.5640 -4.9810 2.0397 41 1 9.0341 0.4429 -0.2484 42 1 7.6063 2.3236 -0.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785692834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = -56.499493 kcal Electronic energy + Delta-G solvation = -25226.565217 eV Core-core repulsion = 21365.936490 eV Total energy + Delta-G solvation = -3860.628727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97793 -40.25278 -38.61927 -37.02312 -35.09883 -34.32299 -33.37623 -32.37336 -31.92926 -30.88626 -29.17803 -27.59620 -25.22040 -23.42896 -22.70628 -22.44240 -21.58164 -20.47641 -19.76989 -18.36309 -18.16991 -17.59101 -16.82901 -16.65701 -16.41338 -15.37892 -15.00742 -14.88149 -14.68590 -14.37804 -14.26368 -14.07096 -13.81401 -13.35349 -13.21901 -13.18929 -13.00864 -12.79478 -12.40517 -12.29440 -12.19245 -11.96777 -11.76846 -11.32909 -11.02352 -10.86337 -10.71954 -10.70304 -10.23712 -9.99901 -9.68605 -9.55752 -9.48593 -8.81806 -8.72203 -8.27674 -7.56244 -6.24134 -4.26882 0.34910 1.53055 1.75934 2.65031 2.84883 3.04241 3.25719 3.33053 3.40486 3.52081 4.02996 4.31047 4.53308 4.57668 4.60501 4.70585 4.73552 4.93439 4.95489 4.99170 5.09927 5.11227 5.29861 5.40906 5.42371 5.56994 5.60464 5.68433 5.77036 5.90923 6.06438 6.27889 6.39605 6.42759 6.59877 6.66653 6.70482 7.03748 7.13397 7.20311 7.27434 7.45367 7.66325 8.20402 8.53278 8.73921 8.99308 9.35447 10.87669 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.002202 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.098707 B =12710.999022 C =13414.649408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.490 3.510 5 O -0.491 6.491 6 C -0.230 4.230 7 C 0.031 3.969 8 C -0.129 4.129 9 C -0.019 4.019 10 C -0.171 4.171 11 C 0.204 3.796 12 N -0.690 5.690 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.714 5.714 16 C 0.237 3.763 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.144 4.144 26 C -0.065 4.065 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.406 0.594 37 H 0.395 0.605 38 H 0.026 0.974 39 H 0.021 0.979 40 H 0.268 0.732 41 H 0.148 0.852 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.115 13.675 -3.134 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.338 3.662 5 O -0.380 6.380 6 C -0.249 4.249 7 C 0.013 3.987 8 C -0.130 4.130 9 C -0.038 4.038 10 C -0.192 4.192 11 C 0.107 3.893 12 N -0.335 5.335 13 C 0.392 3.608 14 O -0.460 6.460 15 N -0.366 5.366 16 C 0.115 3.885 17 C -0.583 4.583 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.165 4.165 26 C -0.084 4.084 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.241 0.759 37 H 0.228 0.772 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.165 0.835 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.128 14.078 -3.486 29.883 hybrid contribution 0.191 -0.413 0.124 0.471 sum -25.937 13.665 -3.362 29.509 Atomic orbital electron populations 1.21808 0.92806 1.02916 1.03342 1.22572 0.95212 0.81011 1.02466 1.86204 1.24878 1.31950 1.84579 1.20170 0.80433 0.91328 0.74306 1.91027 1.58935 1.43212 1.44873 1.21269 0.95900 0.95003 1.12699 1.22643 0.92112 0.98030 0.85939 1.18767 0.95849 0.98103 1.00272 1.20641 0.96286 0.92159 0.94685 1.20560 0.95789 1.00670 1.02163 1.17715 0.90143 0.88722 0.92728 1.42763 1.06029 1.19304 1.65416 1.16122 0.80311 0.84889 0.79458 1.90855 1.72771 1.29856 1.52524 1.45481 1.09531 1.12785 1.68799 1.19439 0.74244 0.98065 0.96789 1.21065 0.93330 0.97089 1.46827 0.90225 1.24779 0.97667 0.95886 0.94248 1.69868 1.11934 1.23660 1.47368 0.86810 0.80330 0.82568 0.79948 1.19807 1.20866 1.18427 1.21270 1.01727 0.96423 0.97065 1.21033 0.91947 0.97111 0.98325 0.90364 0.91582 0.91605 0.91585 0.91567 0.84082 0.83938 0.87081 0.85996 0.75936 0.77152 0.95608 0.96072 0.92195 0.83491 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.06 0.50 6.10 37.16 0.23 0.72 16 3 O -0.36 -3.48 10.10 -41.14 -0.42 -3.89 16 4 C 0.49 5.24 6.78 32.08 0.22 5.46 16 5 O -0.49 -6.55 11.85 -19.37 -0.23 -6.78 16 6 C -0.23 -1.89 9.84 -39.34 -0.39 -2.28 16 7 C 0.03 0.26 9.79 -37.17 -0.36 -0.10 16 8 C -0.13 -1.53 4.47 -105.04 -0.47 -2.00 16 9 C -0.02 -0.23 6.65 -39.15 -0.26 -0.49 16 10 C -0.17 -2.24 9.92 -39.46 -0.39 -2.63 16 11 C 0.20 3.14 6.39 -83.69 -0.53 2.60 16 12 N -0.69 -10.56 5.35 -14.19 -0.08 -10.63 16 13 C 0.69 13.53 8.34 -86.93 -0.72 12.80 16 14 O -0.58 -13.27 13.62 5.30 0.07 -13.20 16 15 N -0.71 -14.42 5.55 -66.42 -0.37 -14.79 16 16 C 0.24 5.79 4.49 -5.20 -0.02 5.76 16 17 C -0.55 -14.83 9.83 -34.44 -0.34 -15.17 16 18 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 21 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 25 C -0.14 -2.30 8.66 -39.46 -0.34 -2.65 16 26 C -0.07 -0.86 9.78 -39.15 -0.38 -1.24 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.11 1.23 7.09 -52.49 -0.37 0.86 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.41 4.82 8.81 -40.82 -0.36 4.46 16 37 H 0.39 6.93 8.34 -40.82 -0.34 6.59 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.02 0.54 7.57 -51.92 -0.39 0.15 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.15 2.68 5.94 -52.49 -0.31 2.37 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -34.11 359.46 -8.52 -42.63 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.53 Total: 7.70 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.49 Total: 2.46 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.33 Total: -50.95 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.57 Total: -23.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -8.52 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785692834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.872 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds