Wall clock time and date at job start Tue Mar 31 2020 13:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47002 * 2 1 4 4 C 1.34934 * 116.99711 * 180.02562 * 3 2 1 5 5 O 1.21644 * 120.00447 * 359.97438 * 4 3 2 6 6 C 1.41771 * 119.99739 * 179.97438 * 4 3 2 7 7 C 1.35112 * 119.99966 * 173.61533 * 6 4 3 8 8 C 1.46935 * 119.99983 * 348.08622 * 7 6 4 9 9 C 1.40014 * 120.09864 * 316.03396 * 8 7 6 10 10 C 1.37610 * 119.89477 * 179.75979 * 9 8 7 11 11 C 1.39176 * 120.09908 * 0.49450 * 10 9 8 12 12 N 1.39470 * 119.89792 * 179.73949 * 11 10 9 13 13 C 1.34771 * 119.99966 * 207.29941 * 12 11 10 14 14 O 1.21578 * 120.00376 * 5.52142 * 13 12 11 15 15 N 1.34772 * 119.99985 * 185.51741 * 13 12 11 16 16 C 1.46501 * 120.00372 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47351 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00396 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00249 * 180.02562 * 17 16 15 20 20 N 1.31502 * 120.00446 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99491 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46829 * 89.99906 * 21 19 17 23 23 H 1.48499 * 109.46924 * 209.99803 * 21 19 17 24 24 H 1.48499 * 109.47191 * 329.99948 * 21 19 17 25 25 C 1.39176 * 120.20463 * 359.75471 * 11 10 9 26 26 C 1.37603 * 120.09771 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.46663 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47120 * 300.00188 * 1 2 3 29 29 H 1.09007 * 109.46980 * 60.00509 * 1 2 3 30 30 H 1.08996 * 109.47120 * 239.99812 * 2 1 3 31 31 H 1.08995 * 109.47011 * 119.99900 * 2 1 3 32 32 H 1.07997 * 120.00071 * 353.62033 * 6 4 3 33 33 H 1.07996 * 120.00192 * 168.08422 * 7 6 4 34 34 H 1.07997 * 120.05830 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.94966 * 180.22672 * 10 9 8 36 36 H 0.97006 * 119.99465 * 27.30025 * 12 11 10 37 37 H 0.97007 * 120.00269 * 0.02562 * 15 13 12 38 38 H 1.08997 * 109.47083 * 300.00233 * 16 15 13 39 39 H 1.09008 * 109.46635 * 59.99895 * 16 15 13 40 40 H 0.96998 * 120.00609 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.94734 * 179.97438 * 25 11 10 42 42 H 1.07999 * 120.04677 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3441 1.5240 -0.0005 5 8 4.0851 0.5594 -0.0005 6 6 3.8859 2.8341 -0.0011 7 6 5.2187 3.0140 0.1285 8 6 6.0762 1.8901 0.5295 9 6 5.6800 1.0412 1.5701 10 6 6.4839 -0.0130 1.9390 11 6 7.6939 -0.2297 1.2863 12 7 8.5080 -1.2962 1.6672 13 6 9.8410 -1.2262 1.4817 14 8 10.3452 -0.1968 1.0763 15 7 10.6153 -2.2972 1.7457 16 6 12.0643 -2.2213 1.5436 17 6 12.6923 -3.5418 1.9082 18 1 12.0738 -4.3563 2.2555 19 6 14.0564 -3.7102 1.7987 20 7 14.6043 -4.8626 2.1164 21 14 15.1261 -2.3011 1.1987 22 1 15.5699 -1.4877 2.3593 23 1 16.3137 -2.8467 0.4936 24 1 14.3452 -1.4488 0.2666 25 6 8.0942 0.6146 0.2549 26 6 7.2946 1.6686 -0.1237 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2334 3.6883 -0.1051 33 1 5.6539 3.9837 -0.0628 34 1 4.7434 1.2113 2.0801 35 1 6.1775 -0.6705 2.7390 36 1 8.1146 -2.0884 2.0657 37 1 10.2131 -3.1187 2.0690 38 1 12.2740 -1.9962 0.4979 39 1 12.4785 -1.4349 2.1747 40 1 15.5640 -4.9810 2.0397 41 1 9.0341 0.4429 -0.2484 42 1 7.6063 2.3236 -0.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785692834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:49 Heat of formation + Delta-G solvation = -78.982331 kcal Electronic energy + Delta-G solvation = -25227.540146 eV Core-core repulsion = 21365.936490 eV Total energy + Delta-G solvation = -3861.603656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88822 -41.51987 -39.73861 -37.91890 -36.44112 -35.95306 -34.60716 -34.09996 -32.53770 -31.92082 -30.54107 -29.18198 -26.08735 -24.62926 -23.88768 -23.52668 -22.75622 -21.95200 -20.63446 -19.93961 -18.97726 -18.80857 -18.36508 -17.58512 -17.51113 -16.78676 -16.66172 -16.13969 -15.83594 -15.61609 -15.13774 -15.04788 -14.98309 -14.70452 -14.51780 -14.41947 -14.11991 -14.01054 -13.60456 -13.49797 -13.06299 -12.88999 -12.79075 -12.72347 -12.45115 -12.28635 -11.93729 -11.83270 -11.67396 -11.40976 -11.27228 -11.00461 -10.92529 -10.57233 -10.01849 -9.74868 -8.65818 -8.40982 -6.48455 -0.44737 0.52176 0.73311 1.33385 1.35116 1.48231 1.65257 1.97541 2.00832 2.14183 2.27821 2.93337 2.95611 3.29080 3.76779 3.90258 4.01049 4.03749 4.04378 4.16735 4.37805 4.41535 4.45587 4.59205 4.63627 4.73954 4.82644 4.94438 5.00834 5.01438 5.05521 5.13601 5.18776 5.21787 5.37161 5.40842 5.43552 5.53667 5.59581 5.65424 5.93258 6.09389 6.20817 6.53233 6.88050 7.02059 7.16931 7.47319 8.73608 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.002202 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.098707 B =12710.999022 C =13414.649408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.484 3.516 5 O -0.525 6.525 6 C -0.220 4.220 7 C 0.029 3.971 8 C -0.120 4.120 9 C -0.025 4.025 10 C -0.166 4.166 11 C 0.173 3.827 12 N -0.672 5.672 13 C 0.694 3.306 14 O -0.616 6.616 15 N -0.714 5.714 16 C 0.251 3.749 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.027 3.973 20 N -0.930 5.930 21 Si 0.938 3.062 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.259 1.259 25 C -0.168 4.168 26 C -0.074 4.074 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.421 0.579 37 H 0.407 0.593 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.416 15.982 -3.293 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.333 3.667 5 O -0.417 6.417 6 C -0.238 4.238 7 C 0.011 3.989 8 C -0.121 4.121 9 C -0.044 4.044 10 C -0.187 4.187 11 C 0.077 3.923 12 N -0.320 5.320 13 C 0.395 3.605 14 O -0.497 6.497 15 N -0.367 5.367 16 C 0.127 3.873 17 C -0.586 4.586 18 H 0.078 0.922 19 C -0.174 4.174 20 N -0.569 5.569 21 Si 0.762 3.238 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.189 4.189 26 C -0.092 4.092 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.199 0.801 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.259 0.741 37 H 0.243 0.757 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.514 16.378 -3.632 33.083 hybrid contribution 0.667 -1.122 0.154 1.315 sum -27.847 15.256 -3.478 31.942 Atomic orbital electron populations 1.21812 0.90653 1.04094 1.03688 1.22755 0.96923 0.80323 1.01915 1.86216 1.24434 1.32785 1.84166 1.20741 0.80555 0.91985 0.73418 1.91020 1.59626 1.44467 1.46573 1.21578 0.96122 0.94755 1.11350 1.22910 0.91692 0.98329 0.85975 1.19163 0.95428 0.98443 0.99067 1.20925 0.96582 0.91966 0.94916 1.20781 0.94701 1.01110 1.02135 1.17898 0.91206 0.89284 0.93940 1.42434 1.04379 1.20217 1.64923 1.16149 0.81467 0.83970 0.78948 1.90833 1.73880 1.31039 1.53927 1.45167 1.08207 1.13816 1.69484 1.19025 0.76474 0.96139 0.95698 1.21255 0.93484 0.97650 1.46206 0.92228 1.25587 0.99124 0.98212 0.94444 1.69969 1.12595 1.25559 1.48738 0.85847 0.78733 0.79564 0.79689 1.18916 1.19797 1.18358 1.21194 1.01426 0.98222 0.98024 1.21253 0.92282 0.96659 0.99040 0.88815 0.91128 0.91302 0.92406 0.91930 0.80727 0.80072 0.85597 0.83974 0.74060 0.75716 0.96769 0.96833 0.91781 0.86503 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.06 0.81 6.10 71.98 0.44 1.25 16 3 O -0.36 -6.22 10.10 -58.50 -0.59 -6.82 16 4 C 0.48 9.27 6.78 68.69 0.47 9.73 16 5 O -0.52 -13.31 11.85 19.36 0.23 -13.08 16 6 C -0.22 -2.81 9.84 22.42 0.22 -2.59 16 7 C 0.03 0.38 9.79 23.83 0.23 0.62 16 8 C -0.12 -2.61 4.47 -20.14 -0.09 -2.70 16 9 C -0.03 -0.58 6.65 22.55 0.15 -0.43 16 10 C -0.17 -4.19 9.92 22.35 0.22 -3.97 16 11 C 0.17 5.32 6.39 38.38 0.25 5.57 16 12 N -0.67 -20.72 5.35 -317.09 -1.70 -22.42 16 13 C 0.69 27.64 8.34 179.06 1.49 29.14 16 14 O -0.62 -28.90 13.62 -3.96 -0.05 -28.95 16 15 N -0.71 -29.26 5.55 -482.32 -2.68 -31.94 16 16 C 0.25 12.40 4.49 85.63 0.38 12.79 16 17 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 18 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 19 C 0.03 1.52 5.47 84.66 0.46 1.98 16 20 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 21 Si 0.94 44.12 27.47 68.60 1.88 46.00 16 22 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 25 C -0.17 -5.49 8.66 22.35 0.19 -5.29 16 26 C -0.07 -1.88 9.78 22.55 0.22 -1.66 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.13 2.49 7.09 -2.91 -0.02 2.47 16 35 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.42 9.87 8.81 -92.70 -0.82 9.06 16 37 H 0.41 14.46 8.34 -92.70 -0.77 13.69 16 38 H 0.01 0.75 7.20 -2.39 -0.02 0.73 16 39 H 0.01 0.70 7.57 -2.38 -0.02 0.68 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.12 4.50 5.94 -2.91 -0.02 4.49 16 42 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -75.27 359.46 2.44 -72.83 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.58 Total: 25.86 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.63 Total: 13.80 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -4.07 Total: -109.64 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.42 Total: -48.85 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -75.27 2.44 -72.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785692834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds