Wall clock time and date at job start Tue Mar 31 2020 13:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21317 * 120.00169 * 2 1 4 4 C 1.46653 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.40063 * 120.24106 * 0.02812 * 4 2 1 6 6 C 1.37617 * 119.90216 * 179.97438 * 5 4 2 7 7 N 1.48015 * 119.80494 * 180.02562 * 6 5 4 8 8 O 1.21794 * 120.00099 * 0.02562 * 7 6 5 9 9 O 1.21798 * 120.00288 * 180.02562 * 7 6 5 10 10 C 1.38708 * 120.39030 * 0.02562 * 6 5 4 11 11 C 1.37934 * 120.49307 * 359.73937 * 10 6 5 12 12 C 1.38956 * 120.08691 * 0.51222 * 11 10 6 13 13 N 1.38702 * 120.19586 * 179.76593 * 12 11 10 14 14 C 1.46854 * 110.99773 * 299.72725 * 13 12 11 15 15 C 1.53037 * 109.51886 * 185.84129 * 14 13 12 16 16 C 1.53126 * 109.27801 * 300.81620 * 15 14 13 17 17 C 1.50698 * 109.52311 * 177.56193 * 16 15 14 18 18 H 1.07998 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99713 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47333 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46692 * 120.00480 * 21 19 17 24 24 H 1.48496 * 109.47542 * 240.00356 * 21 19 17 25 25 C 1.53124 * 109.15878 * 57.65645 * 16 15 14 26 26 C 1.46844 * 110.99889 * 63.93335 * 13 12 11 27 27 H 1.09001 * 109.47223 * 270.00778 * 1 2 3 28 28 H 1.09001 * 109.46777 * 30.00847 * 1 2 3 29 29 H 1.08999 * 109.47056 * 150.00368 * 1 2 3 30 30 H 1.08001 * 120.04859 * 359.97438 * 5 4 2 31 31 H 1.07998 * 119.74793 * 180.02562 * 10 6 5 32 32 H 1.08003 * 119.95349 * 180.25981 * 11 10 6 33 33 H 1.08994 * 109.46310 * 65.82355 * 14 13 12 34 34 H 1.09004 * 109.45830 * 305.85042 * 14 13 12 35 35 H 1.09000 * 109.50480 * 180.88135 * 15 14 13 36 36 H 1.08992 * 109.50737 * 60.75564 * 15 14 13 37 37 H 1.08999 * 109.51925 * 297.75795 * 16 15 14 38 38 H 0.96995 * 120.00213 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.50059 * 62.28737 * 25 16 15 40 40 H 1.08993 * 109.49981 * 182.40384 * 25 16 15 41 41 H 1.09002 * 109.46133 * 294.17887 * 26 13 12 42 42 H 1.09002 * 109.46211 * 54.14413 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5451 -2.4860 0.0005 6 6 2.2402 -3.6737 0.0005 7 7 1.5034 -4.9574 -0.0001 8 8 0.2854 -4.9605 -0.0011 9 8 2.1150 -6.0107 0.0004 10 6 3.6273 -3.6749 0.0011 11 6 4.3283 -2.4870 -0.0037 12 6 3.6469 -1.2760 0.0015 13 7 4.3495 -0.0801 0.0016 14 6 5.2067 0.0265 1.1893 15 6 5.8526 1.4132 1.2308 16 6 6.6808 1.6234 -0.0399 17 6 7.2709 3.0101 -0.0328 18 1 7.0758 3.6757 0.7950 19 6 8.0607 3.4285 -1.0826 20 7 8.2987 2.6177 -2.0905 21 14 8.7916 5.1475 -1.0742 22 1 8.3761 5.8560 0.1629 23 1 10.2732 5.0556 -1.1176 24 1 8.3073 5.8973 -2.2609 25 6 5.7746 1.4592 -1.2633 26 6 5.1309 0.0712 -1.2324 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4651 -2.4914 0.0005 31 1 4.1623 -4.6130 0.0007 32 1 5.4083 -2.4981 -0.0075 33 1 5.9847 -0.7355 1.1452 34 1 4.6046 -0.1207 2.0860 35 1 6.5010 1.4867 2.1039 36 1 5.0754 2.1752 1.2887 37 1 7.4822 0.8856 -0.0785 38 1 8.8540 2.9122 -2.8292 39 1 4.9962 2.2219 -1.2445 40 1 6.3672 1.5655 -2.1718 41 1 5.9093 -0.6911 -1.2651 42 1 4.4739 -0.0437 -2.0946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804607240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:04 Heat of formation + Delta-G solvation = -1.548876 kcal Electronic energy + Delta-G solvation = -26868.384359 eV Core-core repulsion = 23010.138469 eV Total energy + Delta-G solvation = -3858.245890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38086 -40.78488 -38.64447 -37.81118 -36.75257 -34.37427 -32.55346 -32.00815 -30.34441 -29.97672 -29.49569 -26.69781 -25.25146 -24.32693 -22.93814 -22.31277 -21.37696 -20.68447 -19.02754 -18.81728 -18.50420 -17.71885 -17.21937 -16.35645 -16.17186 -15.84097 -15.18768 -14.84486 -14.67806 -14.43797 -14.39766 -13.81587 -13.32779 -13.22408 -12.74967 -12.56003 -12.49853 -12.41538 -12.30234 -12.16533 -11.75472 -11.67896 -11.41326 -11.32997 -11.05580 -10.93478 -10.58264 -10.38692 -10.21715 -9.82915 -9.71537 -9.61458 -9.41807 -9.10033 -8.84266 -8.37463 -8.17339 -6.04784 -4.09540 -0.39915 0.22326 1.06434 1.17878 2.18177 3.11807 3.26593 3.35115 3.39210 3.71385 3.73071 4.06168 4.27567 4.40251 4.53172 4.71298 4.89070 5.01986 5.03408 5.22040 5.25919 5.31124 5.36018 5.46915 5.52368 5.62648 5.73552 5.85733 5.88627 6.00722 6.05791 6.19090 6.36017 6.43744 6.69401 6.89851 6.96237 7.27251 7.34929 7.44769 7.45660 7.56947 7.70347 7.94079 8.03279 8.39671 8.93801 9.55454 11.01784 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.003217 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.701331 B = 8701.154825 C = 9400.441443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.380 3.620 3 O -0.388 6.388 4 C -0.155 4.155 5 C -0.009 4.009 6 C -0.071 4.071 7 N 0.034 4.966 8 O -0.165 6.165 9 O -0.164 6.164 10 C -0.021 4.021 11 C -0.164 4.164 12 C 0.219 3.781 13 N -0.498 5.498 14 C 0.067 3.933 15 C -0.105 4.105 16 C 0.048 3.952 17 C -0.509 4.509 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.103 4.103 26 C 0.066 3.934 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.259 0.741 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.032 0.968 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 -11.397 3.688 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.252 3.748 3 O -0.257 6.257 4 C -0.158 4.158 5 C -0.028 4.028 6 C -0.154 4.154 7 N 0.552 4.448 8 O -0.380 6.380 9 O -0.379 6.379 10 C -0.041 4.041 11 C -0.185 4.185 12 C 0.122 3.878 13 N -0.220 5.220 14 C -0.058 4.058 15 C -0.143 4.143 16 C 0.030 3.970 17 C -0.547 4.547 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.141 4.141 26 C -0.058 4.058 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.668 -9.768 3.534 16.382 hybrid contribution 0.776 -0.372 -0.141 0.872 sum -11.892 -10.140 3.393 15.992 Atomic orbital electron populations 1.22276 0.93877 1.04881 1.04713 1.21991 0.90998 0.87271 0.74523 1.90748 1.71191 1.32577 1.31213 1.20714 0.93199 0.94762 1.07112 1.21273 1.01893 0.88964 0.90712 1.20930 0.92609 0.83521 1.18329 1.43562 1.01164 1.02782 0.97247 1.94526 0.95571 1.94220 1.53673 1.94541 1.69838 1.19898 1.53665 1.21083 0.90850 1.00684 0.91481 1.22039 1.02121 0.91502 1.02874 1.19734 0.92493 0.90255 0.85269 1.59583 1.30178 1.27244 1.04958 1.22254 0.93497 1.00151 0.89920 1.21690 0.98878 0.93201 1.00504 1.18697 0.92317 0.96933 0.89069 1.21204 1.29352 0.98924 1.05220 0.92594 1.24962 0.96210 0.97246 0.95582 1.69860 1.38670 1.35503 1.09189 0.86559 0.78782 0.84782 0.78016 1.19794 1.21133 1.21042 1.21700 0.97944 0.90786 1.03640 1.22420 0.93975 1.01462 0.87961 0.88596 0.89066 0.90009 0.82027 0.82774 0.83024 0.94874 0.92153 0.92643 0.91817 0.96048 0.93094 0.93088 0.88474 0.95001 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 9.75 36.01 0.35 -1.20 16 2 C 0.38 4.67 7.21 -30.91 -0.22 4.45 16 3 O -0.39 -6.53 15.78 5.53 0.09 -6.44 16 4 C -0.15 -1.84 5.89 -104.90 -0.62 -2.46 16 5 C -0.01 -0.09 8.86 -39.12 -0.35 -0.43 16 6 C -0.07 -0.77 6.84 -80.00 -0.55 -1.32 16 7 N 0.03 0.42 4.45 33.94 0.15 0.57 16 8 O -0.16 -2.08 18.42 -29.46 -0.54 -2.62 16 9 O -0.16 -2.15 18.43 -29.46 -0.54 -2.69 16 10 C -0.02 -0.22 9.54 -39.52 -0.38 -0.59 16 11 C -0.16 -1.87 8.66 -39.43 -0.34 -2.21 16 12 C 0.22 2.96 4.67 -83.58 -0.39 2.57 16 13 N -0.50 -8.20 2.56 -170.88 -0.44 -8.64 16 14 C 0.07 1.10 5.11 -3.83 -0.02 1.08 16 15 C -0.10 -2.09 5.32 -26.65 -0.14 -2.23 16 16 C 0.05 1.14 2.16 -91.64 -0.20 0.94 16 17 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 20 N -0.89 -24.63 11.37 55.43 0.63 -24.00 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.10 -2.31 5.12 -26.65 -0.14 -2.44 16 26 C 0.07 1.20 5.16 -3.84 -0.02 1.18 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.46 6.46 -51.93 -0.34 0.13 16 30 H 0.16 1.21 5.89 -52.49 -0.31 0.90 16 31 H 0.15 1.30 7.59 -52.49 -0.40 0.90 16 32 H 0.15 1.62 7.11 -52.48 -0.37 1.24 16 33 H 0.03 0.51 7.33 -51.93 -0.38 0.13 16 34 H 0.06 0.91 8.10 -51.93 -0.42 0.48 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.10 2.44 6.17 -51.93 -0.32 2.12 16 41 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16 42 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -29.69 349.22 -9.24 -38.92 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.43 Total: -1.32 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -3.40 Total: -14.96 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.34 Total: -32.06 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.00 Total: -11.75 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.69 -9.24 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804607240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.374 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds