Wall clock time and date at job start Tue Mar 31 2020 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21317 * 120.00169 * 2 1 4 4 C 1.46653 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.40063 * 120.24106 * 0.02812 * 4 2 1 6 6 C 1.37617 * 119.90216 * 179.97438 * 5 4 2 7 7 N 1.48015 * 119.80494 * 180.02562 * 6 5 4 8 8 O 1.21794 * 120.00099 * 0.02562 * 7 6 5 9 9 O 1.21798 * 120.00288 * 180.02562 * 7 6 5 10 10 C 1.38708 * 120.39030 * 0.02562 * 6 5 4 11 11 C 1.37934 * 120.49307 * 359.73937 * 10 6 5 12 12 C 1.38956 * 120.08691 * 0.51222 * 11 10 6 13 13 N 1.38702 * 120.19586 * 179.76593 * 12 11 10 14 14 C 1.46854 * 110.99773 * 299.72725 * 13 12 11 15 15 C 1.53037 * 109.51886 * 185.84129 * 14 13 12 16 16 C 1.53126 * 109.27801 * 300.81620 * 15 14 13 17 17 C 1.50698 * 109.52311 * 177.56193 * 16 15 14 18 18 H 1.07998 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99713 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47333 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46692 * 120.00480 * 21 19 17 24 24 H 1.48496 * 109.47542 * 240.00356 * 21 19 17 25 25 C 1.53124 * 109.15878 * 57.65645 * 16 15 14 26 26 C 1.46844 * 110.99889 * 63.93335 * 13 12 11 27 27 H 1.09001 * 109.47223 * 270.00778 * 1 2 3 28 28 H 1.09001 * 109.46777 * 30.00847 * 1 2 3 29 29 H 1.08999 * 109.47056 * 150.00368 * 1 2 3 30 30 H 1.08001 * 120.04859 * 359.97438 * 5 4 2 31 31 H 1.07998 * 119.74793 * 180.02562 * 10 6 5 32 32 H 1.08003 * 119.95349 * 180.25981 * 11 10 6 33 33 H 1.08994 * 109.46310 * 65.82355 * 14 13 12 34 34 H 1.09004 * 109.45830 * 305.85042 * 14 13 12 35 35 H 1.09000 * 109.50480 * 180.88135 * 15 14 13 36 36 H 1.08992 * 109.50737 * 60.75564 * 15 14 13 37 37 H 1.08999 * 109.51925 * 297.75795 * 16 15 14 38 38 H 0.96995 * 120.00213 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.50059 * 62.28737 * 25 16 15 40 40 H 1.08993 * 109.49981 * 182.40384 * 25 16 15 41 41 H 1.09002 * 109.46133 * 294.17887 * 26 13 12 42 42 H 1.09002 * 109.46211 * 54.14413 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5451 -2.4860 0.0005 6 6 2.2402 -3.6737 0.0005 7 7 1.5034 -4.9574 -0.0001 8 8 0.2854 -4.9605 -0.0011 9 8 2.1150 -6.0107 0.0004 10 6 3.6273 -3.6749 0.0011 11 6 4.3283 -2.4870 -0.0037 12 6 3.6469 -1.2760 0.0015 13 7 4.3495 -0.0801 0.0016 14 6 5.2067 0.0265 1.1893 15 6 5.8526 1.4132 1.2308 16 6 6.6808 1.6234 -0.0399 17 6 7.2709 3.0101 -0.0328 18 1 7.0758 3.6757 0.7950 19 6 8.0607 3.4285 -1.0826 20 7 8.2987 2.6177 -2.0905 21 14 8.7916 5.1475 -1.0742 22 1 8.3761 5.8560 0.1629 23 1 10.2732 5.0556 -1.1176 24 1 8.3073 5.8973 -2.2609 25 6 5.7746 1.4592 -1.2633 26 6 5.1309 0.0712 -1.2324 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4651 -2.4914 0.0005 31 1 4.1623 -4.6130 0.0007 32 1 5.4083 -2.4981 -0.0075 33 1 5.9847 -0.7355 1.1452 34 1 4.6046 -0.1207 2.0860 35 1 6.5010 1.4867 2.1039 36 1 5.0754 2.1752 1.2887 37 1 7.4822 0.8856 -0.0785 38 1 8.8540 2.9122 -2.8292 39 1 4.9962 2.2219 -1.2445 40 1 6.3672 1.5655 -2.1718 41 1 5.9093 -0.6911 -1.2651 42 1 4.4739 -0.0437 -2.0946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804607240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:03 Heat of formation + Delta-G solvation = -16.066597 kcal Electronic energy + Delta-G solvation = -26869.013895 eV Core-core repulsion = 23010.138469 eV Total energy + Delta-G solvation = -3858.875426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30957 -41.82799 -39.80281 -38.97272 -37.70025 -36.00968 -33.70267 -33.43982 -31.71105 -31.37814 -30.31362 -28.12113 -26.64492 -25.20885 -24.32624 -23.89583 -22.64553 -21.59897 -20.42990 -19.85627 -19.52009 -18.63921 -18.59003 -18.18447 -17.11530 -16.74447 -16.59584 -16.24165 -15.71920 -15.62002 -15.48498 -15.03231 -14.80539 -14.49748 -14.29010 -14.09914 -13.81643 -13.31319 -13.21127 -13.03578 -12.91988 -12.88357 -12.78005 -12.68892 -12.39944 -12.32771 -12.29499 -12.14970 -12.00512 -11.45817 -10.93446 -10.81251 -10.75496 -10.55940 -10.45838 -10.38236 -9.41854 -8.11032 -6.22756 -1.34637 -0.63675 0.11526 0.26569 1.28922 1.37845 1.40765 1.51272 2.22132 2.42061 2.54623 2.89395 3.16725 3.23665 3.46318 3.64365 3.78626 3.98479 4.10529 4.13048 4.24942 4.29676 4.33550 4.38888 4.48448 4.60135 4.64696 4.70527 4.74209 4.83586 4.88755 4.93937 5.02972 5.15518 5.23146 5.26052 5.27234 5.50489 5.60401 5.81683 5.97490 6.12960 6.24055 6.38701 6.47158 6.68268 6.87433 7.44837 8.93822 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.003217 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.701331 B = 8701.154825 C = 9400.441443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.381 3.619 3 O -0.446 6.446 4 C -0.161 4.161 5 C 0.012 3.988 6 C -0.073 4.073 7 N 0.035 4.965 8 O -0.160 6.160 9 O -0.183 6.183 10 C -0.008 4.008 11 C -0.161 4.161 12 C 0.195 3.805 13 N -0.506 5.506 14 C 0.074 3.926 15 C -0.097 4.097 16 C 0.047 3.953 17 C -0.531 4.531 18 H 0.048 0.952 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.950 3.050 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.282 1.282 25 C -0.091 4.091 26 C 0.080 3.920 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.192 0.808 31 H 0.174 0.826 32 H 0.159 0.841 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.000 1.000 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 -12.971 4.308 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.257 3.743 3 O -0.320 6.320 4 C -0.164 4.164 5 C -0.008 4.008 6 C -0.157 4.157 7 N 0.551 4.449 8 O -0.378 6.378 9 O -0.394 6.394 10 C -0.028 4.028 11 C -0.182 4.182 12 C 0.099 3.901 13 N -0.228 5.228 14 C -0.051 4.051 15 C -0.135 4.135 16 C 0.028 3.972 17 C -0.569 4.569 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.208 1.208 25 C -0.129 4.129 26 C -0.045 4.045 27 H 0.135 0.865 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.209 0.791 31 H 0.191 0.809 32 H 0.176 0.824 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.285 -11.393 4.164 18.740 hybrid contribution 1.210 0.066 -0.326 1.255 sum -13.075 -11.327 3.839 17.720 Atomic orbital electron populations 1.22314 0.90142 1.06239 1.06407 1.22729 0.92977 0.86449 0.72160 1.90746 1.72640 1.34302 1.34289 1.20766 0.92617 0.95505 1.07497 1.21445 1.03150 0.87573 0.88594 1.21051 0.92905 0.83217 1.18482 1.43695 1.01158 1.03019 0.96986 1.94519 0.95777 1.94314 1.53197 1.94553 1.69847 1.20391 1.54625 1.21242 0.90735 1.00985 0.89833 1.21994 1.02426 0.90976 1.02757 1.19790 0.93121 0.89612 0.87549 1.59321 1.29735 1.29870 1.03856 1.22130 0.94122 0.97904 0.90967 1.21512 0.98015 0.95212 0.98740 1.18645 0.92278 0.94843 0.91384 1.21573 1.29865 1.00398 1.05112 0.93410 1.25674 0.96702 1.00674 0.95338 1.69981 1.39047 1.36933 1.09536 0.85632 0.78136 0.80687 0.77959 1.19461 1.20503 1.20802 1.21389 0.96719 0.93063 1.01763 1.22087 0.94343 0.98543 0.89536 0.86477 0.89142 0.87232 0.79129 0.80854 0.82394 0.93587 0.90185 0.92117 0.93684 0.98218 0.93061 0.95665 0.91523 0.94266 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 9.75 71.24 0.69 -1.73 16 2 C 0.38 8.78 7.21 27.89 0.20 8.98 16 3 O -0.45 -15.15 15.78 -3.15 -0.05 -15.20 16 4 C -0.16 -3.45 5.89 -20.05 -0.12 -3.57 16 5 C 0.01 0.19 8.86 22.57 0.20 0.39 16 6 C -0.07 -1.36 6.84 36.34 0.25 -1.11 16 7 N 0.03 0.75 4.45 -46.55 -0.21 0.54 16 8 O -0.16 -3.51 18.42 18.89 0.35 -3.16 16 9 O -0.18 -4.33 18.43 18.89 0.35 -3.98 16 10 C -0.01 -0.14 9.54 22.31 0.21 0.07 16 11 C -0.16 -3.27 8.66 22.37 0.19 -3.08 16 12 C 0.20 4.96 4.67 38.82 0.18 5.14 16 13 N -0.51 -16.52 2.56 -694.54 -1.77 -18.30 16 14 C 0.07 2.39 5.11 86.32 0.44 2.83 16 15 C -0.10 -3.95 5.32 30.65 0.16 -3.78 16 16 C 0.05 2.30 2.16 -11.46 -0.02 2.28 16 17 C -0.53 -29.30 8.56 25.60 0.22 -29.08 16 18 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 19 C 0.01 0.81 5.31 84.65 0.45 1.26 16 20 N -0.92 -51.96 11.37 21.45 0.24 -51.72 16 21 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.09 -4.29 5.12 30.65 0.16 -4.13 16 26 C 0.08 2.94 5.16 86.33 0.45 3.39 16 27 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 0.75 6.46 -2.39 -0.02 0.73 16 30 H 0.19 1.91 5.89 -2.91 -0.02 1.89 16 31 H 0.17 2.36 7.59 -2.91 -0.02 2.33 16 32 H 0.16 3.02 7.11 -2.91 -0.02 2.99 16 33 H 0.05 1.37 7.33 -2.39 -0.02 1.35 16 34 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 3.52 6.17 -2.39 -0.01 3.51 16 41 H 0.04 1.37 7.52 -2.39 -0.02 1.35 16 42 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -67.01 349.22 5.65 -61.36 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.05 Total: 6.85 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 3.66 Total: -22.15 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.74 Total: -69.48 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.65 Total: -22.34 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.01 5.65 -61.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804607240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.293 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds