Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46907 * 2 1 4 4 C 1.46506 * 119.99613 * 269.99427 * 3 2 1 5 5 C 1.50696 * 109.47362 * 270.00410 * 4 3 2 6 6 H 1.08005 * 120.00094 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00189 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99549 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46965 * 59.99738 * 9 7 5 11 11 H 1.48495 * 109.47074 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47056 * 299.99946 * 9 7 5 13 13 C 1.34773 * 120.00601 * 90.00255 * 3 2 1 14 14 O 1.21282 * 120.00557 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99847 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.47276 * 180.02562 * 15 13 3 17 17 C 1.39715 * 119.99845 * 180.02562 * 16 15 13 18 18 C 1.39035 * 119.92468 * 359.72161 * 17 16 15 19 19 C 1.38346 * 120.14431 * 179.79641 * 18 17 16 20 20 C 1.37616 * 120.05252 * 0.45050 * 19 18 17 21 21 C 1.39776 * 120.42815 * 359.80409 * 20 19 18 22 22 C 1.38646 * 119.92074 * 180.02562 * 17 16 15 23 23 C 1.47452 * 108.04089 * 180.02562 * 21 20 19 24 24 O 1.21473 * 124.89735 * 180.02562 * 23 21 20 25 25 O 1.34338 * 110.20681 * 359.97438 * 23 21 20 26 26 C 1.45378 * 109.02271 * 0.02562 * 25 23 21 27 27 H 1.09004 * 109.47166 * 300.00267 * 1 2 3 28 28 H 1.08999 * 109.47026 * 60.00502 * 1 2 3 29 29 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47515 * 239.99664 * 2 1 3 31 31 H 1.08999 * 109.47026 * 119.99498 * 2 1 3 32 32 H 1.09002 * 109.46755 * 30.00229 * 4 3 2 33 33 H 1.09001 * 109.46996 * 150.00163 * 4 3 2 34 34 H 0.97001 * 119.99316 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47205 * 60.00496 * 15 13 3 36 36 H 1.09005 * 109.47240 * 300.00706 * 15 13 3 37 37 H 0.96999 * 119.99984 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.92544 * 0.02562 * 18 17 16 39 39 H 1.07996 * 119.96820 * 180.27674 * 19 18 17 40 40 H 1.07999 * 120.13211 * 359.97438 * 22 17 16 41 41 H 1.09004 * 110.06866 * 119.23517 * 26 25 23 42 42 H 1.08998 * 110.06911 * 240.70591 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 6.1417 0.6407 -3.5941 11 1 6.1613 2.7972 -4.7025 12 1 6.8409 2.6207 -2.3812 13 6 2.2429 2.0167 1.1671 14 8 2.6467 3.1603 1.1671 15 6 1.9913 1.3066 2.4722 16 7 2.3082 2.2043 3.5857 17 6 2.1530 1.7653 4.9029 18 6 1.6922 0.4780 5.1552 19 6 1.5409 0.0371 6.4578 20 6 1.8375 0.8755 7.5080 21 6 2.2966 2.1739 7.2694 22 6 2.4529 2.6164 5.9555 23 6 2.5272 2.8235 8.5729 24 8 2.9288 3.9602 8.7215 25 8 2.2279 1.9773 9.5724 26 6 1.7812 0.7148 9.0067 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6875 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 3.6755 3.5167 -4.4437 35 1 2.6213 0.4189 2.5302 36 1 0.9433 1.0126 2.5298 37 1 2.6258 3.1035 3.4084 38 1 1.4555 -0.1804 4.3326 39 1 1.1870 -0.9649 6.6505 40 1 2.8066 3.6178 5.7591 41 1 2.4437 -0.0915 9.3217 42 1 0.7595 0.5040 9.3227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809198126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = -74.639454 kcal Electronic energy + Delta-G solvation = -25622.372377 eV Core-core repulsion = 21760.957042 eV Total energy + Delta-G solvation = -3861.415335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71904 -39.69943 -38.73439 -37.59028 -35.76411 -35.14505 -32.91873 -31.49028 -31.08889 -30.26291 -28.53596 -27.09575 -25.67981 -24.54697 -23.19055 -22.71121 -21.67045 -20.95283 -18.85740 -18.05065 -17.36231 -17.10199 -17.00326 -16.55887 -16.09714 -15.67277 -15.40738 -15.19250 -14.84141 -14.53543 -14.10573 -13.92719 -13.88780 -13.76961 -13.58716 -13.48430 -13.06608 -12.77278 -12.23831 -12.18321 -12.13152 -11.81797 -11.69077 -11.34017 -11.27000 -11.03235 -10.88170 -10.63851 -10.46428 -10.25347 -10.22407 -9.77725 -9.40244 -9.23280 -8.52276 -7.88826 -7.67629 -6.13742 -4.19229 0.37530 1.10417 2.30420 2.77058 3.03731 3.10316 3.25827 3.31043 3.34083 3.47061 3.59289 3.82168 3.92188 4.36491 4.48132 4.72551 4.78127 4.82120 4.84726 5.05723 5.15134 5.18123 5.19835 5.21208 5.29358 5.47539 5.52016 5.62108 5.74320 5.86678 5.90517 5.93537 6.08581 6.21178 6.33731 6.44288 6.83192 7.03894 7.22652 7.28726 7.36077 7.56192 7.81288 8.11169 8.18825 8.70105 8.87401 9.46216 10.94405 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002532 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.057216 B =11055.887136 C =11804.077189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.246 3.754 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.499 3.501 14 O -0.537 6.537 15 C 0.101 3.899 16 N -0.724 5.724 17 C 0.225 3.775 18 C -0.167 4.167 19 C -0.044 4.044 20 C -0.175 4.175 21 C -0.145 4.145 22 C -0.111 4.111 23 C 0.522 3.478 24 O -0.453 6.453 25 O -0.323 6.323 26 C 0.102 3.898 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.416 0.584 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 -12.022 19.050 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.285 3.715 14 O -0.414 6.414 15 C -0.027 4.027 16 N -0.355 5.355 17 C 0.118 3.882 18 C -0.190 4.190 19 C -0.063 4.063 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.134 4.134 23 C 0.364 3.636 24 O -0.339 6.339 25 O -0.238 6.238 26 C 0.027 3.973 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.255 0.745 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.128 0.872 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.346 -10.846 18.947 23.035 hybrid contribution 1.046 0.003 -0.728 1.274 sum -6.300 -10.843 18.219 22.117 Atomic orbital electron populations 1.22232 0.96489 1.01678 1.02473 1.21493 0.93712 0.83913 1.03014 1.48240 1.63013 1.13362 1.07542 1.19329 0.96490 0.93662 0.77757 1.21357 0.96785 1.32335 1.06463 0.92500 1.24934 0.97944 0.94791 0.96336 1.69917 1.35799 1.33136 1.14351 0.86544 0.84615 0.78289 0.77900 1.20205 1.21107 1.20149 1.20099 0.79150 0.87113 0.85156 1.90684 1.46075 1.17974 1.86691 1.21275 1.01716 0.93674 0.86066 1.44593 1.72207 1.17790 1.00876 1.17677 0.93184 0.92717 0.84573 1.20885 1.05757 0.95108 0.97264 1.19929 0.97499 0.98760 0.90128 1.20457 1.06336 0.95652 0.95375 1.20402 1.04502 0.95923 0.93931 1.20222 1.03650 1.00433 0.89114 1.20557 0.74522 0.84561 0.83938 1.90893 1.41217 1.15210 1.86535 1.87211 1.77326 1.25377 1.33926 1.22252 1.02234 0.83758 0.89006 0.93066 0.91849 0.91894 0.89516 0.91661 0.94723 0.93794 0.92542 0.89436 0.89481 0.74489 0.84666 0.84874 0.84637 0.87193 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.10 1.41 5.93 -4.04 -0.02 1.38 16 3 N -0.59 -11.21 2.46 -175.06 -0.43 -11.64 16 4 C 0.25 6.07 5.16 -5.19 -0.03 6.04 16 5 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.50 9.25 7.74 -10.99 -0.09 9.16 16 14 O -0.54 -12.35 15.25 5.56 0.08 -12.26 16 15 C 0.10 1.27 3.94 -5.20 -0.02 1.25 16 16 N -0.72 -9.34 5.70 -59.83 -0.34 -9.69 16 17 C 0.22 2.53 6.65 -83.82 -0.56 1.97 16 18 C -0.17 -1.47 9.31 -39.25 -0.37 -1.83 16 19 C -0.04 -0.32 10.02 -39.77 -0.40 -0.72 16 20 C -0.18 -1.49 6.38 -104.21 -0.67 -2.15 16 21 C -0.15 -1.66 6.27 -105.09 -0.66 -2.32 16 22 C -0.11 -1.32 9.95 -38.95 -0.39 -1.71 16 23 C 0.52 6.79 8.58 34.48 0.30 7.09 16 24 O -0.45 -7.40 18.04 -18.92 -0.34 -7.74 16 25 O -0.32 -3.46 11.13 -39.17 -0.44 -3.89 16 26 C 0.10 0.65 7.93 36.07 0.29 0.93 16 27 H 0.05 0.54 7.22 -51.93 -0.37 0.16 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.09 0.95 7.21 -51.93 -0.37 0.58 16 36 H 0.09 0.89 6.98 -51.93 -0.36 0.53 16 37 H 0.42 6.04 7.44 -40.82 -0.30 5.74 16 38 H 0.14 0.94 6.71 -52.49 -0.35 0.59 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -34.22 360.02 -8.38 -42.60 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.41 Total: 1.57 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.65 Total: 4.46 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.03 Total: -46.43 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.69 Total: -23.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.22 -8.38 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809198126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.044 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds