Wall clock time and date at job start Tue Mar 31 2020 13:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46907 * 2 1 4 4 C 1.46506 * 119.99613 * 269.99427 * 3 2 1 5 5 C 1.50696 * 109.47362 * 270.00410 * 4 3 2 6 6 H 1.08005 * 120.00094 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00189 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99549 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46965 * 59.99738 * 9 7 5 11 11 H 1.48495 * 109.47074 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47056 * 299.99946 * 9 7 5 13 13 C 1.34773 * 120.00601 * 90.00255 * 3 2 1 14 14 O 1.21282 * 120.00557 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99847 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.47276 * 180.02562 * 15 13 3 17 17 C 1.39715 * 119.99845 * 180.02562 * 16 15 13 18 18 C 1.39035 * 119.92468 * 359.72161 * 17 16 15 19 19 C 1.38346 * 120.14431 * 179.79641 * 18 17 16 20 20 C 1.37616 * 120.05252 * 0.45050 * 19 18 17 21 21 C 1.39776 * 120.42815 * 359.80409 * 20 19 18 22 22 C 1.38646 * 119.92074 * 180.02562 * 17 16 15 23 23 C 1.47452 * 108.04089 * 180.02562 * 21 20 19 24 24 O 1.21473 * 124.89735 * 180.02562 * 23 21 20 25 25 O 1.34338 * 110.20681 * 359.97438 * 23 21 20 26 26 C 1.45378 * 109.02271 * 0.02562 * 25 23 21 27 27 H 1.09004 * 109.47166 * 300.00267 * 1 2 3 28 28 H 1.08999 * 109.47026 * 60.00502 * 1 2 3 29 29 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47515 * 239.99664 * 2 1 3 31 31 H 1.08999 * 109.47026 * 119.99498 * 2 1 3 32 32 H 1.09002 * 109.46755 * 30.00229 * 4 3 2 33 33 H 1.09001 * 109.46996 * 150.00163 * 4 3 2 34 34 H 0.97001 * 119.99316 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47205 * 60.00496 * 15 13 3 36 36 H 1.09005 * 109.47240 * 300.00706 * 15 13 3 37 37 H 0.96999 * 119.99984 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.92544 * 0.02562 * 18 17 16 39 39 H 1.07996 * 119.96820 * 180.27674 * 19 18 17 40 40 H 1.07999 * 120.13211 * 359.97438 * 22 17 16 41 41 H 1.09004 * 110.06866 * 119.23517 * 26 25 23 42 42 H 1.08998 * 110.06911 * 240.70591 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 6.1417 0.6407 -3.5941 11 1 6.1613 2.7972 -4.7025 12 1 6.8409 2.6207 -2.3812 13 6 2.2429 2.0167 1.1671 14 8 2.6467 3.1603 1.1671 15 6 1.9913 1.3066 2.4722 16 7 2.3082 2.2043 3.5857 17 6 2.1530 1.7653 4.9029 18 6 1.6922 0.4780 5.1552 19 6 1.5409 0.0371 6.4578 20 6 1.8375 0.8755 7.5080 21 6 2.2966 2.1739 7.2694 22 6 2.4529 2.6164 5.9555 23 6 2.5272 2.8235 8.5729 24 8 2.9288 3.9602 8.7215 25 8 2.2279 1.9773 9.5724 26 6 1.7812 0.7148 9.0067 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6875 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 3.6755 3.5167 -4.4437 35 1 2.6213 0.4189 2.5302 36 1 0.9433 1.0126 2.5298 37 1 2.6258 3.1035 3.4084 38 1 1.4555 -0.1804 4.3326 39 1 1.1870 -0.9649 6.6505 40 1 2.8066 3.6178 5.7591 41 1 2.4437 -0.0915 9.3217 42 1 0.7595 0.5040 9.3227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809198126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:57 Heat of formation + Delta-G solvation = -97.726194 kcal Electronic energy + Delta-G solvation = -25623.373493 eV Core-core repulsion = 21760.957042 eV Total energy + Delta-G solvation = -3862.416451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51727 -41.00320 -39.70015 -38.57211 -37.13546 -36.17586 -34.91497 -32.25455 -31.99841 -31.53355 -29.77639 -28.35764 -26.82773 -25.30054 -24.76788 -24.02187 -22.45430 -21.81997 -20.16191 -19.02618 -18.61373 -18.24634 -18.10578 -17.78878 -17.44198 -16.82578 -16.60676 -16.39964 -15.98570 -15.62769 -15.26315 -14.97062 -14.69520 -14.68058 -14.50820 -14.47046 -14.24242 -14.14763 -13.63238 -13.45001 -13.24745 -13.09336 -12.82436 -12.66601 -12.57320 -12.49151 -12.18165 -12.07816 -11.86547 -11.75648 -11.37049 -11.00464 -10.75715 -10.66081 -10.11984 -9.50687 -8.49771 -8.24744 -6.39370 -0.43535 0.41659 1.35531 1.39505 1.42066 1.46492 1.69807 1.89251 2.12020 2.35724 2.54412 2.72254 2.87392 3.05537 3.27174 3.52770 3.83946 4.06773 4.14383 4.21448 4.28693 4.34960 4.46294 4.46725 4.47610 4.61197 4.68103 4.81843 4.93622 5.00875 5.01681 5.07368 5.19617 5.21381 5.22386 5.43479 5.53289 5.55118 5.70322 5.80898 6.03247 6.17387 6.28826 6.51391 6.67321 6.75356 7.23453 7.38220 8.82181 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002532 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.057216 B =11055.887136 C =11804.077189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.488 3.512 14 O -0.596 6.596 15 C 0.119 3.881 16 N -0.741 5.741 17 C 0.208 3.792 18 C -0.154 4.154 19 C -0.033 4.033 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.135 4.135 23 C 0.519 3.481 24 O -0.508 6.508 25 O -0.332 6.332 26 C 0.095 3.905 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.025 0.975 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.402 0.598 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -16.955 20.757 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.277 3.723 14 O -0.477 6.477 15 C -0.008 4.008 16 N -0.371 5.371 17 C 0.104 3.896 18 C -0.177 4.177 19 C -0.052 4.052 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.158 4.158 23 C 0.364 3.636 24 O -0.397 6.397 25 O -0.247 6.247 26 C 0.023 3.977 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.238 0.762 38 H 0.183 0.817 39 H 0.199 0.801 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.208 -15.889 20.698 27.353 hybrid contribution 1.219 1.443 -1.177 2.225 sum -6.989 -14.446 19.521 25.270 Atomic orbital electron populations 1.22178 0.94392 1.03794 1.01739 1.21878 0.95419 0.80802 1.04609 1.48232 1.63194 1.15354 1.05886 1.18719 0.95330 0.91519 0.80425 1.21683 0.97885 1.32059 1.06503 0.92630 1.25849 1.02264 0.94504 0.96539 1.70043 1.37813 1.34153 1.14822 0.85499 0.79118 0.79131 0.77266 1.18211 1.20579 1.20521 1.21195 0.77599 0.86665 0.86878 1.90656 1.48498 1.20830 1.87727 1.21273 1.04255 0.93139 0.82114 1.44623 1.73482 1.17371 1.01668 1.17792 0.94635 0.93922 0.83294 1.21339 1.03441 0.93771 0.99100 1.20432 0.95730 1.00302 0.88687 1.20865 1.03830 0.93977 0.97080 1.20370 1.06788 0.97655 0.92839 1.20186 1.05235 1.00201 0.90165 1.20894 0.73489 0.84212 0.85016 1.90847 1.44019 1.17525 1.87346 1.87179 1.76819 1.26726 1.34013 1.22805 1.05085 0.82462 0.87371 0.91780 0.94683 0.88223 0.90826 0.87135 0.95719 0.98693 0.92431 0.86459 0.86007 0.76168 0.81691 0.80052 0.86876 0.83696 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.46 16 2 C 0.09 2.36 5.93 86.38 0.51 2.87 16 3 N -0.60 -22.70 2.46 -826.16 -2.03 -24.73 16 4 C 0.26 13.51 5.16 85.63 0.44 13.95 16 5 C -0.54 -30.29 9.39 25.60 0.24 -30.04 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 9 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.49 18.15 7.74 87.66 0.68 18.83 16 14 O -0.60 -28.98 15.25 -3.03 -0.05 -29.03 16 15 C 0.12 2.68 3.94 85.63 0.34 3.01 16 16 N -0.74 -18.68 5.70 -343.21 -1.96 -20.64 16 17 C 0.21 4.35 6.65 38.17 0.25 4.61 16 18 C -0.15 -1.95 9.31 22.49 0.21 -1.74 16 19 C -0.03 -0.29 10.02 22.15 0.22 -0.06 16 20 C -0.15 -2.03 6.38 -19.60 -0.13 -2.16 16 21 C -0.17 -3.90 6.27 -20.17 -0.13 -4.03 16 22 C -0.13 -3.31 9.95 22.68 0.23 -3.09 16 23 C 0.52 13.89 8.58 70.25 0.60 14.49 16 24 O -0.51 -17.94 18.04 19.61 0.35 -17.58 16 25 O -0.33 -6.65 11.13 -52.83 -0.59 -7.24 16 26 C 0.10 0.80 7.93 71.28 0.56 1.37 16 27 H 0.06 1.10 7.22 -2.39 -0.02 1.08 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.11 1.76 6.44 -2.39 -0.02 1.74 16 32 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 33 H -0.01 -0.31 7.42 -2.39 -0.02 -0.33 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.12 1.96 7.21 -2.38 -0.02 1.94 16 36 H 0.12 1.90 6.98 -2.38 -0.02 1.89 16 37 H 0.40 12.43 7.44 -92.71 -0.69 11.74 16 38 H 0.17 1.11 6.71 -2.91 -0.02 1.09 16 39 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 40 H 0.11 3.12 8.06 -2.91 -0.02 3.09 16 41 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -84.26 360.02 3.65 -80.61 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.37 Total: 11.24 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.24 Total: 16.44 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -3.70 Total: -100.61 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.28 Total: -53.85 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -84.26 3.65 -80.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809198126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.113 kcal (2) G-P(sol) polarization free energy of solvation -84.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds