Wall clock time and date at job start Tue Mar 31 2020 13:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47291 * 2 1 4 4 C 1.35196 * 117.00126 * 180.02562 * 3 2 1 5 5 N 1.30930 * 125.01096 * 359.97339 * 4 3 2 6 6 C 1.35541 * 109.71424 * 180.02562 * 5 4 3 7 7 C 1.40042 * 133.26059 * 180.02562 * 6 5 4 8 8 C 1.36183 * 120.08858 * 180.22816 * 7 6 5 9 9 C 1.40212 * 120.49140 * 359.49057 * 8 7 6 10 10 C 1.47367 * 119.95485 * 180.23487 * 9 8 7 11 11 O 1.21516 * 119.99924 * 180.26821 * 10 9 8 12 12 O 1.34772 * 119.99962 * 0.27044 * 10 9 8 13 13 C 1.45196 * 117.00120 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47026 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46939 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00418 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00235 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47416 * 60.00252 * 20 18 16 22 22 H 1.48502 * 109.46833 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47005 * 299.99736 * 20 18 16 24 24 C 1.39592 * 120.08892 * 0.50814 * 9 8 7 25 25 C 1.38188 * 119.59137 * 359.75265 * 24 9 8 26 26 N 1.36251 * 125.01163 * 180.02562 * 4 3 2 27 27 H 0.97001 * 126.39823 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.47345 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.47361 * 60.00172 * 1 2 3 30 30 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46959 * 239.99532 * 2 1 3 32 32 H 1.09001 * 109.46833 * 120.00369 * 2 1 3 33 33 H 1.08002 * 119.95210 * 359.94406 * 7 6 5 34 34 H 1.08005 * 119.75210 * 179.74280 * 8 7 6 35 35 H 1.09006 * 109.46954 * 300.00313 * 13 12 10 36 36 H 1.09003 * 109.47118 * 59.99762 * 13 12 10 37 37 H 1.09000 * 109.47070 * 299.99476 * 14 13 12 38 38 H 1.08997 * 109.47321 * 60.00169 * 14 13 12 39 39 H 1.08998 * 109.47139 * 300.00322 * 15 14 13 40 40 H 1.08997 * 109.46982 * 59.99955 * 15 14 13 41 41 H 0.96997 * 120.00507 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.20418 * 179.73107 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3467 1.5244 -0.0005 5 7 4.2319 0.5596 -0.0006 6 6 5.4811 1.0854 -0.0006 7 6 6.7613 0.5177 -0.0011 8 6 7.8631 1.3181 0.0037 9 6 7.7286 2.7138 -0.0016 10 6 8.9290 3.5687 -0.0016 11 8 8.8134 4.7783 -0.0012 12 8 10.1550 3.0089 -0.0019 13 6 11.2919 3.9119 -0.0025 14 6 12.5884 3.0996 -0.0035 15 6 13.7866 4.0512 -0.0034 16 6 15.0635 3.2511 -0.0038 17 1 15.0246 2.1717 -0.0045 18 6 16.2817 3.8968 -0.0043 19 7 16.3293 5.2111 -0.0040 20 14 17.8646 2.9050 -0.0055 21 1 17.9118 2.0493 -1.2183 22 1 19.0275 3.8286 -0.0053 23 1 17.9131 2.0486 1.2068 24 6 6.4593 3.2945 -0.0011 25 6 5.3388 2.4857 -0.0006 26 7 3.9754 2.7331 -0.0001 27 1 3.5484 3.6041 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 6.8749 -0.5563 -0.0006 34 1 8.8478 0.8745 0.0075 35 1 11.2565 4.5402 -0.8925 36 1 11.2572 4.5404 0.8875 37 1 12.6241 2.4711 0.8864 38 1 12.6229 2.4715 -0.8936 39 1 13.7511 4.6801 -0.8929 40 1 13.7518 4.6789 0.8870 41 1 17.1862 5.6655 -0.0039 42 1 6.3535 4.3694 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815441756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:43 Heat of formation + Delta-G solvation = -62.346781 kcal Electronic energy + Delta-G solvation = -24494.972660 eV Core-core repulsion = 20634.090375 eV Total energy + Delta-G solvation = -3860.882285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.61837 -40.24058 -39.32340 -37.18704 -36.26379 -33.96008 -33.66217 -32.29790 -31.69900 -30.45723 -29.66801 -27.05228 -24.59803 -24.17371 -23.00077 -22.80350 -21.72193 -20.89895 -20.30767 -19.21881 -18.17562 -17.63196 -17.21506 -16.88617 -16.24133 -16.17642 -15.77650 -15.28822 -14.93698 -14.77590 -14.44805 -14.17169 -14.05419 -13.49018 -13.35779 -13.27151 -12.85137 -12.25711 -12.23875 -12.18674 -11.96738 -11.87983 -11.75090 -11.33842 -10.95111 -10.90848 -10.69590 -10.61612 -10.48556 -10.39891 -10.35723 -9.69423 -9.49317 -9.15818 -8.77915 -8.39162 -8.36582 -6.01581 -4.04620 0.26779 1.07917 1.38574 2.06494 2.75550 2.80742 3.22874 3.34166 3.38428 3.41090 3.60913 3.77396 4.38224 4.40487 4.42351 4.45098 4.69774 4.76220 4.81659 4.93519 4.95458 5.04580 5.21672 5.28547 5.34370 5.42694 5.61033 5.64825 5.66459 5.70459 6.00117 6.07708 6.08065 6.18576 6.41464 6.51194 6.56901 6.85172 6.96498 7.00736 7.32854 7.62216 7.73542 7.92725 7.96825 8.37894 9.01447 9.59575 11.09801 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.001734 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.258823 B =16147.017015 C =16724.921861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 O -0.298 6.298 4 C 0.482 3.518 5 N -0.536 5.536 6 C 0.107 3.893 7 C -0.088 4.088 8 C -0.062 4.062 9 C -0.112 4.112 10 C 0.508 3.492 11 O -0.512 6.512 12 O -0.351 6.351 13 C 0.069 3.931 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.030 4.030 25 C 0.028 3.972 26 N -0.585 5.585 27 H 0.430 0.570 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.590 -9.441 0.014 33.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.001 3.999 3 O -0.202 6.202 4 C 0.179 3.821 5 N -0.274 5.274 6 C -0.012 4.012 7 C -0.107 4.107 8 C -0.083 4.083 9 C -0.115 4.115 10 C 0.353 3.647 11 O -0.402 6.402 12 O -0.267 6.267 13 C -0.004 4.004 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.050 4.050 25 C -0.078 4.078 26 N -0.207 5.207 27 H 0.270 0.730 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -32.887 -9.665 0.014 34.278 hybrid contribution 0.782 0.947 -0.001 1.228 sum -32.104 -8.719 0.013 33.267 Atomic orbital electron populations 1.21865 0.92099 1.03551 1.03626 1.22861 0.94979 0.78391 1.03636 1.85843 1.12718 1.32964 1.88647 1.20548 0.85296 0.81964 0.94339 1.70741 0.98602 1.28035 1.30067 1.18986 0.92194 0.89211 1.00811 1.19935 0.87910 1.00718 1.02186 1.21005 0.99777 0.91612 0.95863 1.18756 0.90069 0.93370 1.09296 1.20832 0.84122 0.86602 0.73136 1.90833 1.87687 1.15554 1.46156 1.86544 1.14634 1.42298 1.83205 1.23539 0.82394 0.92160 1.02269 1.21772 0.91277 0.99576 1.02050 1.19051 0.90360 0.94226 0.97699 1.21142 0.90696 0.93110 1.51104 0.92447 1.25022 0.99291 0.94905 0.95192 1.69952 1.25659 1.07277 1.50477 0.86608 0.82617 0.79821 0.78663 1.20182 1.21292 1.20187 1.19899 0.87976 0.99795 0.97374 1.18267 0.82723 0.96164 1.10657 1.42241 1.04647 1.08200 1.65617 0.73041 0.91372 0.91377 0.89470 0.90672 0.90673 0.84235 0.83195 0.91403 0.91396 0.92055 0.92052 0.96220 0.96219 0.92859 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 10.28 37.16 0.38 -0.09 16 2 C 0.08 0.42 6.27 37.16 0.23 0.65 16 3 O -0.30 -2.30 10.18 -17.29 -0.18 -2.47 16 4 C 0.48 4.58 8.86 -88.90 -0.79 3.79 16 5 N -0.54 -5.98 10.59 -12.18 -0.13 -6.11 16 6 C 0.11 1.22 7.22 -84.60 -0.61 0.61 16 7 C -0.09 -0.90 10.03 -39.64 -0.40 -1.30 16 8 C -0.06 -0.68 9.53 -39.58 -0.38 -1.06 16 9 C -0.11 -1.42 5.88 -104.94 -0.62 -2.03 16 10 C 0.51 7.98 7.88 34.45 0.27 8.25 16 11 O -0.51 -9.22 16.12 -19.28 -0.31 -9.53 16 12 O -0.35 -5.82 9.44 -40.69 -0.38 -6.20 16 13 C 0.07 1.27 5.48 37.16 0.20 1.48 16 14 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.03 -0.33 9.61 -39.09 -0.38 -0.71 16 25 C 0.03 0.30 7.28 -83.89 -0.61 -0.31 16 26 N -0.59 -4.91 6.27 -11.94 -0.07 -4.98 16 27 H 0.43 2.24 8.96 -40.82 -0.37 1.87 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.50 7.58 -52.48 -0.40 1.10 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.14 1.45 7.64 -52.48 -0.40 1.05 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -33.39 368.00 -8.98 -42.37 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.78 Total: -2.97 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.38 Total: -6.10 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.53 Total: -37.17 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.87 Total: -18.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.39 -8.98 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815441756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.977 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds