Wall clock time and date at job start Tue Mar 31 2020 13:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47291 * 2 1 4 4 C 1.35196 * 117.00126 * 180.02562 * 3 2 1 5 5 N 1.30930 * 125.01096 * 359.97339 * 4 3 2 6 6 C 1.35541 * 109.71424 * 180.02562 * 5 4 3 7 7 C 1.40042 * 133.26059 * 180.02562 * 6 5 4 8 8 C 1.36183 * 120.08858 * 180.22816 * 7 6 5 9 9 C 1.40212 * 120.49140 * 359.49057 * 8 7 6 10 10 C 1.47367 * 119.95485 * 180.23487 * 9 8 7 11 11 O 1.21516 * 119.99924 * 180.26821 * 10 9 8 12 12 O 1.34772 * 119.99962 * 0.27044 * 10 9 8 13 13 C 1.45196 * 117.00120 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47026 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.46939 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00418 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00235 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47416 * 60.00252 * 20 18 16 22 22 H 1.48502 * 109.46833 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47005 * 299.99736 * 20 18 16 24 24 C 1.39592 * 120.08892 * 0.50814 * 9 8 7 25 25 C 1.38188 * 119.59137 * 359.75265 * 24 9 8 26 26 N 1.36251 * 125.01163 * 180.02562 * 4 3 2 27 27 H 0.97001 * 126.39823 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.47345 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.47361 * 60.00172 * 1 2 3 30 30 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46959 * 239.99532 * 2 1 3 32 32 H 1.09001 * 109.46833 * 120.00369 * 2 1 3 33 33 H 1.08002 * 119.95210 * 359.94406 * 7 6 5 34 34 H 1.08005 * 119.75210 * 179.74280 * 8 7 6 35 35 H 1.09006 * 109.46954 * 300.00313 * 13 12 10 36 36 H 1.09003 * 109.47118 * 59.99762 * 13 12 10 37 37 H 1.09000 * 109.47070 * 299.99476 * 14 13 12 38 38 H 1.08997 * 109.47321 * 60.00169 * 14 13 12 39 39 H 1.08998 * 109.47139 * 300.00322 * 15 14 13 40 40 H 1.08997 * 109.46982 * 59.99955 * 15 14 13 41 41 H 0.96997 * 120.00507 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.20418 * 179.73107 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3467 1.5244 -0.0005 5 7 4.2319 0.5596 -0.0006 6 6 5.4811 1.0854 -0.0006 7 6 6.7613 0.5177 -0.0011 8 6 7.8631 1.3181 0.0037 9 6 7.7286 2.7138 -0.0016 10 6 8.9290 3.5687 -0.0016 11 8 8.8134 4.7783 -0.0012 12 8 10.1550 3.0089 -0.0019 13 6 11.2919 3.9119 -0.0025 14 6 12.5884 3.0996 -0.0035 15 6 13.7866 4.0512 -0.0034 16 6 15.0635 3.2511 -0.0038 17 1 15.0246 2.1717 -0.0045 18 6 16.2817 3.8968 -0.0043 19 7 16.3293 5.2111 -0.0040 20 14 17.8646 2.9050 -0.0055 21 1 17.9118 2.0493 -1.2183 22 1 19.0275 3.8286 -0.0053 23 1 17.9131 2.0486 1.2068 24 6 6.4593 3.2945 -0.0011 25 6 5.3388 2.4857 -0.0006 26 7 3.9754 2.7331 -0.0001 27 1 3.5484 3.6041 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 6.8749 -0.5563 -0.0006 34 1 8.8478 0.8745 0.0075 35 1 11.2565 4.5402 -0.8925 36 1 11.2572 4.5404 0.8875 37 1 12.6241 2.4711 0.8864 38 1 12.6229 2.4715 -0.8936 39 1 13.7511 4.6801 -0.8929 40 1 13.7518 4.6789 0.8870 41 1 17.1862 5.6655 -0.0039 42 1 6.3535 4.3694 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815441756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:42 Heat of formation + Delta-G solvation = -83.444963 kcal Electronic energy + Delta-G solvation = -24495.887546 eV Core-core repulsion = 20634.090375 eV Total energy + Delta-G solvation = -3861.797171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.39667 -41.48098 -40.00950 -38.17572 -37.50870 -35.89858 -34.45800 -33.66050 -32.69218 -31.30021 -30.60847 -28.86146 -25.85284 -24.77561 -24.53119 -23.56760 -22.46018 -22.12888 -21.96964 -19.98240 -19.18864 -18.61348 -18.35978 -17.84429 -17.83382 -17.61843 -16.74319 -16.47915 -15.94910 -15.66150 -15.61806 -15.58213 -14.95454 -14.77407 -14.15119 -14.00439 -13.83844 -13.73677 -13.68898 -13.51197 -12.80882 -12.79357 -12.65956 -12.55003 -12.51191 -12.34161 -12.04728 -12.01899 -11.85297 -11.57128 -11.43848 -11.36845 -11.26406 -11.21932 -10.53825 -9.57504 -9.23651 -8.18943 -6.30325 -0.64478 0.24734 0.71644 1.13778 1.43570 1.46927 1.54167 1.60194 1.75432 2.43702 2.53359 2.70755 3.05055 3.15042 3.56503 3.62602 3.97478 4.03563 4.04401 4.04949 4.08940 4.12408 4.14185 4.39276 4.43434 4.48458 4.63834 4.84499 4.84607 4.89231 4.92646 5.00564 5.11629 5.20505 5.22885 5.25149 5.40594 5.48894 5.53847 5.65646 5.67846 5.83314 6.22157 6.28066 6.58225 6.65478 6.85605 7.39104 8.92975 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.001734 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.258823 B =16147.017015 C =16724.921861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 O -0.297 6.297 4 C 0.486 3.514 5 N -0.555 5.555 6 C 0.096 3.904 7 C -0.085 4.085 8 C -0.058 4.058 9 C -0.130 4.130 10 C 0.510 3.490 11 O -0.541 6.541 12 O -0.347 6.347 13 C 0.079 3.921 14 C -0.094 4.094 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.022 4.022 25 C 0.024 3.976 26 N -0.574 5.574 27 H 0.444 0.556 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.264 0.736 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.847 -11.360 0.014 35.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.005 4.005 3 O -0.200 6.200 4 C 0.183 3.817 5 N -0.294 5.294 6 C -0.024 4.024 7 C -0.105 4.105 8 C -0.079 4.079 9 C -0.133 4.133 10 C 0.357 3.643 11 O -0.433 6.433 12 O -0.263 6.263 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.043 4.043 25 C -0.083 4.083 26 N -0.198 5.198 27 H 0.287 0.713 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -34.195 -11.589 0.014 36.106 hybrid contribution 0.979 1.518 -0.001 1.807 sum -33.216 -10.070 0.013 34.709 Atomic orbital electron populations 1.21885 0.90095 1.04815 1.03720 1.23119 0.96459 0.77386 1.03557 1.85905 1.11550 1.34375 1.88197 1.20718 0.85877 0.81996 0.93146 1.70732 0.98690 1.28803 1.31170 1.19325 0.92765 0.89738 1.00535 1.20115 0.87246 1.01664 1.01456 1.21065 1.00493 0.90818 0.95479 1.18628 0.89068 0.93729 1.11902 1.21341 0.84253 0.86670 0.72020 1.90818 1.87854 1.16850 1.47775 1.86520 1.14694 1.41596 1.83481 1.23182 0.82520 0.91800 1.01980 1.21462 0.90341 0.98545 1.02774 1.18942 0.92295 0.94520 0.95482 1.21616 0.91850 0.93840 1.50882 0.91558 1.25994 1.03237 0.95980 0.94612 1.70093 1.26656 1.09143 1.51464 0.85456 0.77764 0.78278 0.79281 1.19050 1.21031 1.19058 1.19898 0.87719 1.00136 0.96510 1.18218 0.83384 0.95900 1.10796 1.42186 1.03901 1.08808 1.64891 0.71327 0.91254 0.91260 0.87598 0.90766 0.90766 0.82244 0.82315 0.91782 0.91774 0.91255 0.91250 0.98479 0.98478 0.92751 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.28 71.98 0.74 0.12 16 2 C 0.07 0.65 6.27 71.98 0.45 1.10 16 3 O -0.30 -4.11 10.18 -84.77 -0.86 -4.97 16 4 C 0.49 8.51 8.86 179.75 1.59 10.11 16 5 N -0.55 -11.61 10.59 -306.23 -3.24 -14.85 16 6 C 0.10 2.06 7.22 39.62 0.29 2.34 16 7 C -0.09 -1.61 10.03 22.23 0.22 -1.39 16 8 C -0.06 -1.19 9.53 22.27 0.21 -0.98 16 9 C -0.13 -3.21 5.88 -20.07 -0.12 -3.32 16 10 C 0.51 15.94 7.88 70.23 0.55 16.49 16 11 O -0.54 -19.67 16.12 19.78 0.32 -19.35 16 12 O -0.35 -11.35 9.44 -56.83 -0.54 -11.88 16 13 C 0.08 2.91 5.48 71.98 0.39 3.30 16 14 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 19 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 20 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.02 -0.47 9.61 22.58 0.22 -0.25 16 25 C 0.02 0.48 7.28 38.68 0.28 0.76 16 26 N -0.57 -8.76 6.27 -302.70 -1.90 -10.66 16 27 H 0.44 3.90 8.96 -92.71 -0.83 3.07 16 28 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.16 2.93 7.58 -2.91 -0.02 2.90 16 35 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.15 2.92 7.64 -2.91 -0.02 2.90 16 Total: -1.00 -71.27 368.00 2.15 -69.11 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.22 Total: 7.16 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.85 Total: -3.96 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -4.86 Total: -82.07 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.08 Total: -36.21 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.27 2.15 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815441756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.332 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds