Wall clock time and date at job start Tue Mar 31 2020 12:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 N 1.46504 * 109.47167 * 120.00435 * 2 1 3 5 5 C 1.34781 * 119.99460 * 274.99431 * 4 2 1 6 6 O 1.21687 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.46371 * 119.99705 * 180.02562 * 5 4 2 8 8 H 1.08004 * 120.00229 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00087 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99811 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00031 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47161 * 90.00135 * 11 9 7 13 13 H 1.48499 * 109.47036 * 209.99784 * 11 9 7 14 14 H 1.48500 * 109.47372 * 330.00033 * 11 9 7 15 15 C 1.50706 * 109.47034 * 240.00121 * 2 1 3 16 16 C 1.38291 * 119.92804 * 279.72295 * 15 2 1 17 17 C 1.38107 * 120.06545 * 179.71935 * 16 15 2 18 18 C 1.38862 * 119.93199 * 0.55876 * 17 16 15 19 19 N 1.39955 * 120.07158 * 179.70224 * 18 17 16 20 20 C 1.46070 * 118.51853 * 269.40104 * 19 18 17 21 21 C 1.53130 * 109.91560 * 160.53628 * 20 19 18 22 22 C 1.53482 * 108.36282 * 47.97743 * 21 20 19 23 23 O 1.45432 * 108.10984 * 298.26775 * 22 21 20 24 24 C 1.33728 * 118.52419 * 89.12733 * 19 18 17 25 25 O 1.21509 * 118.45639 * 2.29262 * 24 19 18 26 26 C 1.38862 * 119.86038 * 359.71732 * 18 17 16 27 27 C 1.38113 * 119.92943 * 0.02562 * 26 18 17 28 28 H 1.09006 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47033 * 299.99323 * 1 2 3 30 30 H 1.09000 * 109.47168 * 60.00167 * 1 2 3 31 31 H 0.96996 * 120.00579 * 95.00076 * 4 2 1 32 32 H 0.96994 * 119.99408 * 179.97438 * 10 9 7 33 33 H 1.08004 * 119.96378 * 0.02562 * 16 15 2 34 34 H 1.08000 * 120.03478 * 180.27106 * 17 16 15 35 35 H 1.09004 * 109.39292 * 280.66763 * 20 19 18 36 36 H 1.08997 * 109.39735 * 40.48557 * 20 19 18 37 37 H 1.08997 * 109.68678 * 167.69990 * 21 20 19 38 38 H 1.08997 * 109.67906 * 288.22245 * 21 20 19 39 39 H 1.08996 * 109.73780 * 57.92793 * 22 21 20 40 40 H 1.09003 * 109.73337 * 178.62045 * 22 21 20 41 41 H 1.08003 * 120.03613 * 179.97438 * 26 18 17 42 42 H 1.08001 * 119.96407 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1623 2.4119 7 6 2.6356 -0.7082 3.5521 8 1 2.8924 -1.7561 3.5036 9 6 2.7689 -0.0097 4.7586 10 7 2.4578 1.2581 4.8174 11 14 3.3916 -0.8903 6.2838 12 1 4.8716 -0.7851 6.3466 13 1 2.7991 -0.2646 7.4932 14 1 2.9992 -2.3213 6.2241 15 6 2.0323 -0.7104 -1.2305 16 6 2.0715 -2.0924 -1.2617 17 6 2.5258 -2.7465 -2.3900 18 6 2.9545 -2.0148 -3.4896 19 7 3.4214 -2.6745 -4.6322 20 6 4.8477 -2.9734 -4.7310 21 6 5.0783 -4.0804 -5.7637 22 6 4.2942 -3.7269 -7.0348 23 8 2.8811 -3.6760 -6.6947 24 6 2.5407 -3.0077 -5.5818 25 8 1.3785 -2.6862 -5.4322 26 6 2.9193 -0.6271 -3.4530 27 6 2.4589 0.0210 -2.3237 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 2.5498 1.7417 5.6531 33 1 1.7417 -2.6609 -0.4046 34 1 2.5521 -3.8258 -2.4154 35 1 5.3854 -2.0758 -5.0365 36 1 5.2165 -3.3035 -3.7599 37 1 6.1411 -4.1508 -5.9954 38 1 4.7254 -5.0321 -5.3665 39 1 4.6179 -2.7557 -7.4089 40 1 4.4625 -4.4896 -7.7951 41 1 3.2525 -0.0551 -4.3065 42 1 2.4309 1.1003 -2.2948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817284710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:37 Heat of formation + Delta-G solvation = -81.574206 kcal Electronic energy + Delta-G solvation = -26068.273852 eV Core-core repulsion = 22206.557803 eV Total energy + Delta-G solvation = -3861.716049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55166 -39.48541 -37.70709 -37.23528 -36.25374 -34.09040 -32.51484 -32.19426 -30.99982 -30.08937 -28.46779 -26.82329 -26.10125 -24.45441 -23.16998 -22.72969 -21.11114 -19.97985 -19.21128 -18.56140 -17.96693 -17.48424 -16.80820 -15.81746 -15.57761 -15.37112 -15.29545 -15.05859 -14.58435 -14.32336 -14.17466 -13.81714 -13.47050 -13.43311 -13.30084 -12.85279 -12.60300 -12.33149 -12.23634 -11.99668 -11.93499 -11.59751 -11.38702 -11.26815 -11.02321 -10.94698 -10.87886 -10.54816 -10.48627 -10.34966 -10.20697 -9.32545 -8.88763 -8.86220 -8.57023 -7.61325 -7.53508 -6.18814 -4.64408 1.23823 1.45821 2.16626 2.48992 3.04906 3.13603 3.20607 3.23890 3.72336 3.98851 4.05520 4.10519 4.40216 4.58641 4.61305 4.77845 4.79400 4.93494 4.96850 4.98900 5.06088 5.09658 5.32802 5.42216 5.51036 5.62876 5.72287 5.73485 5.88992 6.05645 6.11776 6.17028 6.33639 6.45374 6.45973 6.52666 6.78491 6.87900 7.03911 7.37878 7.43121 7.87235 7.91834 8.09267 8.32516 9.02325 9.52606 10.59771 10.78404 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.002608 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.007324 B =10734.800520 C =11369.134773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.186 3.814 3 H 0.086 0.914 4 N -0.761 5.761 5 C 0.557 3.443 6 O -0.579 6.579 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.061 4.061 16 C -0.103 4.103 17 C -0.102 4.102 18 C 0.125 3.875 19 N -0.576 5.576 20 C 0.106 3.894 21 C -0.174 4.174 22 C 0.058 3.942 23 O -0.342 6.342 24 C 0.654 3.346 25 O -0.516 6.516 26 C -0.102 4.102 27 C -0.105 4.105 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.379 0.621 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -10.583 -20.993 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 H 0.104 0.896 4 N -0.416 5.416 5 C 0.361 3.639 6 O -0.462 6.462 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.061 4.061 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.036 3.964 19 N -0.319 5.319 20 C -0.016 4.016 21 C -0.212 4.212 22 C -0.016 4.016 23 O -0.253 6.253 24 C 0.409 3.591 25 O -0.399 6.399 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.212 0.788 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.880 -9.519 -21.017 24.076 hybrid contribution 0.775 -0.982 0.697 1.432 sum 7.654 -10.501 -20.319 24.119 Atomic orbital electron populations 1.22156 0.95685 1.01463 1.01847 1.19450 0.93257 0.96788 0.82497 0.89608 1.46301 1.73255 1.12818 1.09251 1.18203 0.77778 0.86394 0.81557 1.90597 1.54788 1.16401 1.84437 1.20874 1.46872 0.97129 0.93340 0.91503 1.25700 0.93344 0.94472 0.99685 1.70018 1.35134 1.08202 1.26284 0.86387 0.79307 0.80239 0.80892 1.19784 1.20476 1.18937 1.20406 0.95959 0.93896 0.95862 1.20889 0.99529 0.94100 0.97680 1.21159 0.98588 0.99685 0.92738 1.17164 1.02516 0.90631 0.86047 1.44629 1.07924 1.60544 1.18794 1.21699 0.80216 0.98486 1.01185 1.22571 1.03096 0.99896 0.95603 1.23497 0.77002 1.03718 0.97429 1.86742 1.28405 1.69817 1.40365 1.17833 0.85159 0.77219 0.78903 1.91051 1.16897 1.54382 1.77597 1.21128 0.99774 0.92972 0.98289 1.20936 0.98748 1.00232 0.92446 0.93133 0.91384 0.93023 0.78841 0.92125 0.85217 0.86089 0.90647 0.89107 0.87543 0.89390 0.90335 0.86647 0.86136 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.46 37.16 0.35 -2.41 16 2 C 0.19 3.56 2.78 -69.08 -0.19 3.36 16 3 H 0.09 1.82 7.43 -51.93 -0.39 1.43 16 4 N -0.76 -16.66 5.02 -56.34 -0.28 -16.94 16 5 C 0.56 15.54 7.71 -12.99 -0.10 15.44 16 6 O -0.58 -18.40 14.68 5.20 0.08 -18.32 16 7 C -0.55 -15.21 9.54 -35.63 -0.34 -15.55 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 10 N -0.77 -22.86 11.83 55.55 0.66 -22.20 16 11 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 C -0.06 -0.96 4.96 -104.59 -0.52 -1.47 16 16 C -0.10 -1.48 9.05 -39.61 -0.36 -1.84 16 17 C -0.10 -1.35 9.97 -39.40 -0.39 -1.75 16 18 C 0.13 1.63 4.14 -83.69 -0.35 1.29 16 19 N -0.58 -6.34 2.86 -119.56 -0.34 -6.68 16 20 C 0.11 0.69 6.47 -4.21 -0.03 0.66 16 21 C -0.17 -0.70 6.27 -26.41 -0.17 -0.86 16 22 C 0.06 0.30 7.21 37.41 0.27 0.57 16 23 O -0.34 -3.76 10.49 -39.26 -0.41 -4.17 16 24 C 0.65 8.83 8.28 53.59 0.44 9.28 16 25 O -0.52 -9.33 16.92 -19.41 -0.33 -9.66 16 26 C -0.10 -1.33 9.97 -39.40 -0.39 -1.73 16 27 C -0.10 -1.48 9.66 -39.61 -0.38 -1.87 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.38 7.35 6.83 -40.82 -0.28 7.07 16 32 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 33 H 0.13 1.76 6.89 -52.48 -0.36 1.40 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.13 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -37.74 358.31 -8.15 -45.88 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.64 Total: 6.29 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.25 Total: 5.45 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.03 Total: -45.82 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.66 Total: -32.15 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.74 -8.15 -45.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817284710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.691 kcal (2) G-P(sol) polarization free energy of solvation -37.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds