Wall clock time and date at job start Tue Mar 31 2020 12:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 N 1.46504 * 109.47167 * 120.00435 * 2 1 3 5 5 C 1.34781 * 119.99460 * 274.99431 * 4 2 1 6 6 O 1.21687 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.46371 * 119.99705 * 180.02562 * 5 4 2 8 8 H 1.08004 * 120.00229 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00087 * 180.02562 * 7 5 4 10 10 N 1.30673 * 119.99811 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00031 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47161 * 90.00135 * 11 9 7 13 13 H 1.48499 * 109.47036 * 209.99784 * 11 9 7 14 14 H 1.48500 * 109.47372 * 330.00033 * 11 9 7 15 15 C 1.50706 * 109.47034 * 240.00121 * 2 1 3 16 16 C 1.38291 * 119.92804 * 279.72295 * 15 2 1 17 17 C 1.38107 * 120.06545 * 179.71935 * 16 15 2 18 18 C 1.38862 * 119.93199 * 0.55876 * 17 16 15 19 19 N 1.39955 * 120.07158 * 179.70224 * 18 17 16 20 20 C 1.46070 * 118.51853 * 269.40104 * 19 18 17 21 21 C 1.53130 * 109.91560 * 160.53628 * 20 19 18 22 22 C 1.53482 * 108.36282 * 47.97743 * 21 20 19 23 23 O 1.45432 * 108.10984 * 298.26775 * 22 21 20 24 24 C 1.33728 * 118.52419 * 89.12733 * 19 18 17 25 25 O 1.21509 * 118.45639 * 2.29262 * 24 19 18 26 26 C 1.38862 * 119.86038 * 359.71732 * 18 17 16 27 27 C 1.38113 * 119.92943 * 0.02562 * 26 18 17 28 28 H 1.09006 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47033 * 299.99323 * 1 2 3 30 30 H 1.09000 * 109.47168 * 60.00167 * 1 2 3 31 31 H 0.96996 * 120.00579 * 95.00076 * 4 2 1 32 32 H 0.96994 * 119.99408 * 179.97438 * 10 9 7 33 33 H 1.08004 * 119.96378 * 0.02562 * 16 15 2 34 34 H 1.08000 * 120.03478 * 180.27106 * 17 16 15 35 35 H 1.09004 * 109.39292 * 280.66763 * 20 19 18 36 36 H 1.08997 * 109.39735 * 40.48557 * 20 19 18 37 37 H 1.08997 * 109.68678 * 167.69990 * 21 20 19 38 38 H 1.08997 * 109.67906 * 288.22245 * 21 20 19 39 39 H 1.08996 * 109.73780 * 57.92793 * 22 21 20 40 40 H 1.09003 * 109.73337 * 178.62045 * 22 21 20 41 41 H 1.08003 * 120.03613 * 179.97438 * 26 18 17 42 42 H 1.08001 * 119.96407 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1623 2.4119 7 6 2.6356 -0.7082 3.5521 8 1 2.8924 -1.7561 3.5036 9 6 2.7689 -0.0097 4.7586 10 7 2.4578 1.2581 4.8174 11 14 3.3916 -0.8903 6.2838 12 1 4.8716 -0.7851 6.3466 13 1 2.7991 -0.2646 7.4932 14 1 2.9992 -2.3213 6.2241 15 6 2.0323 -0.7104 -1.2305 16 6 2.0715 -2.0924 -1.2617 17 6 2.5258 -2.7465 -2.3900 18 6 2.9545 -2.0148 -3.4896 19 7 3.4214 -2.6745 -4.6322 20 6 4.8477 -2.9734 -4.7310 21 6 5.0783 -4.0804 -5.7637 22 6 4.2942 -3.7269 -7.0348 23 8 2.8811 -3.6760 -6.6947 24 6 2.5407 -3.0077 -5.5818 25 8 1.3785 -2.6862 -5.4322 26 6 2.9193 -0.6271 -3.4530 27 6 2.4589 0.0210 -2.3237 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 2.5498 1.7417 5.6531 33 1 1.7417 -2.6609 -0.4046 34 1 2.5521 -3.8258 -2.4154 35 1 5.3854 -2.0758 -5.0365 36 1 5.2165 -3.3035 -3.7599 37 1 6.1411 -4.1508 -5.9954 38 1 4.7254 -5.0321 -5.3665 39 1 4.6179 -2.7557 -7.4089 40 1 4.4625 -4.4896 -7.7951 41 1 3.2525 -0.0551 -4.3065 42 1 2.4309 1.1003 -2.2948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817284710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:36 Heat of formation + Delta-G solvation = -107.795888 kcal Electronic energy + Delta-G solvation = -26069.410909 eV Core-core repulsion = 22206.557803 eV Total energy + Delta-G solvation = -3862.853106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41588 -40.67170 -39.30546 -38.33638 -37.38442 -35.63538 -34.50571 -33.11052 -32.12357 -31.65555 -29.67744 -28.17312 -27.43222 -25.44210 -24.22766 -23.89499 -22.49877 -21.16384 -20.54958 -19.52392 -19.31025 -18.76605 -17.69696 -17.54155 -17.00736 -16.58515 -16.20049 -15.95380 -15.77025 -15.63009 -15.14806 -15.04446 -14.81650 -14.72187 -14.39391 -14.25081 -14.14420 -13.66812 -13.35601 -13.18218 -12.99230 -12.74457 -12.66788 -12.64070 -12.59705 -12.51795 -12.23837 -11.99550 -11.86350 -11.65148 -11.40051 -10.91696 -10.19427 -9.97068 -9.89688 -9.67446 -9.45624 -8.26996 -6.83423 0.11658 0.37354 1.34104 1.41327 1.42851 1.54690 1.57970 2.25768 2.39067 2.49540 2.62808 3.13797 3.58182 3.62310 3.67978 3.72386 3.86742 3.94562 4.06563 4.20311 4.32357 4.35928 4.37792 4.45935 4.50234 4.56851 4.69053 4.72836 4.77344 4.92051 5.02366 5.04795 5.07720 5.18299 5.29877 5.34031 5.38704 5.46104 5.57906 5.90399 5.95090 6.24785 6.30832 6.55991 6.88983 6.92006 7.56761 8.52023 8.69890 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.002608 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.007324 B =10734.800520 C =11369.134773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.189 3.811 3 H 0.057 0.943 4 N -0.747 5.747 5 C 0.542 3.458 6 O -0.629 6.629 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.029 3.971 10 N -0.822 5.822 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.249 1.249 15 C -0.077 4.077 16 C -0.105 4.105 17 C -0.104 4.104 18 C 0.127 3.873 19 N -0.569 5.569 20 C 0.094 3.906 21 C -0.163 4.163 22 C 0.046 3.954 23 O -0.358 6.358 24 C 0.656 3.344 25 O -0.576 6.576 26 C -0.102 4.102 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.393 0.607 32 H 0.274 0.726 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -13.115 -22.122 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.083 3.917 3 H 0.075 0.925 4 N -0.402 5.402 5 C 0.346 3.654 6 O -0.516 6.516 7 C -0.610 4.610 8 H 0.105 0.895 9 C -0.186 4.186 10 N -0.451 5.451 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.172 1.172 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.123 4.123 18 C 0.038 3.962 19 N -0.311 5.311 20 C -0.026 4.026 21 C -0.201 4.201 22 C -0.026 4.026 23 O -0.269 6.269 24 C 0.411 3.589 25 O -0.464 6.464 26 C -0.122 4.122 27 C -0.127 4.127 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.244 -12.113 -22.209 26.933 hybrid contribution 0.136 -0.235 0.856 0.898 sum 9.380 -12.347 -21.353 26.389 Atomic orbital electron populations 1.22058 0.95052 1.02077 1.01164 1.19420 0.93788 0.95537 0.82907 0.92474 1.45959 1.72130 1.13292 1.08823 1.18553 0.77512 0.86034 0.83293 1.90552 1.56904 1.18517 1.85652 1.21423 1.47243 0.98248 0.94046 0.89509 1.26958 0.92831 0.95144 1.03701 1.70190 1.36618 1.10559 1.27774 0.85032 0.78867 0.79197 0.75269 1.18580 1.19957 1.17235 1.20081 0.98301 0.94480 0.94921 1.20934 0.99577 0.93460 0.98426 1.21320 0.98061 1.00578 0.92345 1.17361 1.01413 0.90890 0.86566 1.44714 1.09495 1.59539 1.17400 1.22101 0.77377 1.00409 1.02689 1.22588 1.05086 0.98447 0.93957 1.24016 0.74125 1.05701 0.98777 1.86706 1.32200 1.68889 1.39128 1.17920 0.84666 0.76771 0.79497 1.91000 1.19396 1.56959 1.79019 1.21308 0.99245 0.93286 0.98322 1.21046 0.98488 1.00735 0.92413 0.91788 0.94903 0.90763 0.77231 0.91636 0.84716 0.84417 0.88834 0.88403 0.83767 0.89804 0.88915 0.83839 0.84230 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.46 71.98 0.68 -4.73 16 2 C 0.19 7.47 2.78 44.25 0.12 7.59 16 3 H 0.06 2.58 7.43 -2.39 -0.02 2.56 16 4 N -0.75 -33.59 5.02 -450.39 -2.26 -35.85 16 5 C 0.54 31.34 7.71 86.36 0.67 32.01 16 6 O -0.63 -42.06 14.68 -4.31 -0.06 -42.12 16 7 C -0.57 -32.37 9.54 24.83 0.24 -32.13 16 8 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.03 1.60 5.50 85.31 0.47 2.07 16 10 N -0.82 -50.43 11.83 21.84 0.26 -50.18 16 11 Si 1.00 40.81 29.56 68.60 2.03 42.83 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 15 C -0.08 -2.44 4.96 -19.84 -0.10 -2.54 16 16 C -0.11 -2.95 9.05 22.25 0.20 -2.75 16 17 C -0.10 -2.60 9.97 22.39 0.22 -2.38 16 18 C 0.13 3.12 4.14 38.14 0.16 3.28 16 19 N -0.57 -11.37 2.86 -763.95 -2.19 -13.55 16 20 C 0.09 0.91 6.47 86.50 0.56 1.47 16 21 C -0.16 -0.66 6.27 30.80 0.19 -0.47 16 22 C 0.05 0.32 7.21 72.14 0.52 0.84 16 23 O -0.36 -7.29 10.49 -51.09 -0.54 -7.82 16 24 C 0.66 16.99 8.28 129.95 1.08 18.07 16 25 O -0.58 -20.91 16.92 19.93 0.34 -20.58 16 26 C -0.10 -2.54 9.97 22.39 0.22 -2.31 16 27 C -0.11 -3.02 9.66 22.25 0.21 -2.81 16 28 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.39 15.29 6.83 -92.71 -0.63 14.65 16 32 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 33 H 0.14 3.55 6.89 -2.91 -0.02 3.53 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.14 3.53 8.03 -2.91 -0.02 3.50 16 Total: -1.00 -87.12 358.31 3.44 -83.69 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.41 Total: 28.36 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.45 Total: 15.22 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -4.19 Total: -99.58 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -0.26 Total: -70.53 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -87.12 3.44 -83.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817284710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.109 kcal (2) G-P(sol) polarization free energy of solvation -87.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds