Wall clock time and date at job start Tue Mar 31 2020 12:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 N 1.46506 * 109.47276 * 239.99931 * 2 1 3 5 5 C 1.34778 * 119.99784 * 85.00085 * 4 2 1 6 6 O 1.21688 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.46368 * 120.00219 * 179.97438 * 5 4 2 8 8 H 1.08008 * 119.99801 * 0.02562 * 7 5 4 9 9 C 1.40048 * 120.00208 * 179.97438 * 7 5 4 10 10 N 1.30668 * 120.00239 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 120.00031 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46886 * 90.00327 * 11 9 7 13 13 H 1.48495 * 109.47182 * 210.00248 * 11 9 7 14 14 H 1.48496 * 109.46986 * 330.00586 * 11 9 7 15 15 C 1.50701 * 109.47026 * 120.00490 * 2 1 3 16 16 C 1.38283 * 119.92391 * 259.99923 * 15 2 1 17 17 C 1.38116 * 120.06543 * 180.02562 * 16 15 2 18 18 C 1.38869 * 119.93474 * 0.02562 * 17 16 15 19 19 N 1.39948 * 120.07181 * 179.97438 * 18 17 16 20 20 C 1.46066 * 118.51685 * 89.47326 * 19 18 17 21 21 C 1.53138 * 109.91020 * 160.27659 * 20 19 18 22 22 C 1.53484 * 108.36423 * 47.97930 * 21 20 19 23 23 O 1.45432 * 108.11028 * 298.26850 * 22 21 20 24 24 C 1.33728 * 118.52222 * 269.20158 * 19 18 17 25 25 O 1.21515 * 118.46039 * 2.56843 * 24 19 18 26 26 C 1.38866 * 119.85478 * 0.24689 * 18 17 16 27 27 C 1.38120 * 119.93190 * 359.52317 * 26 18 17 28 28 H 1.09002 * 109.47584 * 299.99744 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99876 * 1 2 3 30 30 H 1.09002 * 109.47471 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00248 * 264.99933 * 4 2 1 32 32 H 0.96999 * 120.00279 * 179.97438 * 10 9 7 33 33 H 1.07995 * 119.97283 * 0.02562 * 16 15 2 34 34 H 1.08002 * 120.03694 * 180.02562 * 17 16 15 35 35 H 1.08992 * 109.39529 * 280.40905 * 20 19 18 36 36 H 1.08993 * 109.40117 * 40.23354 * 20 19 18 37 37 H 1.09003 * 109.68382 * 167.69548 * 21 20 19 38 38 H 1.08998 * 109.68320 * 288.22634 * 21 20 19 39 39 H 1.09001 * 109.73760 * 57.92133 * 22 21 20 40 40 H 1.08996 * 109.73299 * 178.61547 * 22 21 20 41 41 H 1.08003 * 120.03269 * 179.74886 * 26 18 17 42 42 H 1.07998 * 119.96341 * 180.20526 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8572 1.1623 -2.4119 7 6 2.6355 -0.7080 -3.5521 8 1 2.8924 -1.7560 -3.5037 9 6 2.7688 -0.0095 -4.7586 10 7 2.4575 1.2582 -4.8175 11 14 3.3928 -0.8896 -6.2835 12 1 2.2436 -1.4625 -7.0295 13 1 4.1148 0.0751 -7.1513 14 1 4.3160 -1.9813 -5.8820 15 6 2.0322 -0.7105 1.2304 16 6 2.4584 0.0210 2.3238 17 6 2.9198 -0.6271 3.4527 18 6 2.9560 -2.0149 3.4890 19 7 3.4235 -2.6746 4.6312 20 6 2.4670 -3.0116 5.6825 21 6 3.0395 -4.1176 6.5735 22 6 4.4753 -3.7345 6.9576 23 8 5.2618 -3.6474 5.7374 24 6 4.7248 -2.9730 4.7087 25 8 5.4553 -2.6168 3.8053 26 6 2.5327 -2.7465 2.3872 27 6 2.0679 -2.0925 1.2629 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.5502 1.7422 -5.6530 33 1 2.4304 1.1002 2.2950 34 1 3.2522 -0.0553 4.3066 35 1 2.2670 -2.1270 6.2870 36 1 1.5382 -3.3580 5.2294 37 1 2.4323 -4.2153 7.4734 38 1 3.0441 -5.0620 6.0292 39 1 4.4756 -2.7700 7.4653 40 1 4.8966 -4.4965 7.6134 41 1 2.5634 -3.8258 2.4107 42 1 1.7354 -2.6610 0.4070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817284711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:40 Heat of formation + Delta-G solvation = -80.851290 kcal Electronic energy + Delta-G solvation = -26089.965241 eV Core-core repulsion = 22228.280541 eV Total energy + Delta-G solvation = -3861.684701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53847 -39.47953 -37.68903 -37.21499 -36.24374 -34.08180 -32.49558 -32.17873 -30.99751 -30.07869 -28.47435 -26.82739 -26.07592 -24.44576 -23.17556 -22.72594 -21.10700 -19.97595 -19.19369 -18.55643 -17.95839 -17.46038 -16.78801 -15.80106 -15.57044 -15.37409 -15.28172 -15.04085 -14.58193 -14.32083 -14.16296 -13.81739 -13.51272 -13.38521 -13.28784 -12.90788 -12.47597 -12.31290 -12.20287 -12.11380 -11.97774 -11.60849 -11.35066 -11.23881 -11.01391 -10.95138 -10.83070 -10.53888 -10.45989 -10.34613 -10.17385 -9.32011 -8.88503 -8.82992 -8.56915 -7.58563 -7.51365 -6.15654 -4.60902 1.23674 1.45773 2.17930 2.50735 3.06624 3.16929 3.23927 3.27794 3.71914 3.97683 4.04760 4.14089 4.39318 4.60118 4.61814 4.77015 4.80495 4.92434 4.97050 4.99074 5.05146 5.07864 5.31705 5.42171 5.51192 5.63097 5.72126 5.75009 5.87550 6.04787 6.10733 6.14824 6.30959 6.44797 6.45657 6.52060 6.76750 6.87117 7.04139 7.39387 7.46648 7.89985 7.94937 8.12111 8.35914 9.05792 9.55189 10.62767 10.81295 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002667 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.822718 B =10494.911695 C =11147.131567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.186 3.814 3 H 0.086 0.914 4 N -0.760 5.760 5 C 0.557 3.443 6 O -0.580 6.580 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.102 4.102 18 C 0.125 3.875 19 N -0.577 5.577 20 C 0.107 3.893 21 C -0.174 4.174 22 C 0.058 3.942 23 O -0.341 6.341 24 C 0.653 3.347 25 O -0.512 6.512 26 C -0.102 4.102 27 C -0.103 4.103 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.380 0.620 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -10.780 25.231 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.080 3.920 3 H 0.104 0.896 4 N -0.416 5.416 5 C 0.361 3.639 6 O -0.463 6.463 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.061 4.061 16 C -0.124 4.124 17 C -0.122 4.122 18 C 0.036 3.964 19 N -0.320 5.320 20 C -0.015 4.015 21 C -0.212 4.212 22 C -0.017 4.017 23 O -0.253 6.253 24 C 0.407 3.593 25 O -0.395 6.395 26 C -0.122 4.122 27 C -0.122 4.122 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.212 0.788 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.410 -9.693 24.704 26.647 hybrid contribution 0.217 -0.989 -0.467 1.115 sum -2.193 -10.682 24.237 26.577 Atomic orbital electron populations 1.22150 0.95752 1.01318 1.01797 1.19449 0.93146 0.96878 0.82576 0.89617 1.46300 1.73246 1.12870 1.09202 1.18199 0.77755 0.86383 0.81562 1.90592 1.54845 1.16373 1.84478 1.20882 1.46761 0.97192 0.93325 0.91476 1.25695 0.93322 0.94458 0.99695 1.70016 1.35323 1.08161 1.26187 0.86386 0.79342 0.79825 0.81290 1.19781 1.20474 1.18891 1.20404 0.96092 0.93894 0.95743 1.20941 0.98809 1.00221 0.92386 1.21136 0.99414 0.92958 0.98649 1.17166 1.01929 0.90642 0.86630 1.44622 1.06599 1.60755 1.20018 1.21674 0.92771 0.98174 0.88837 1.22572 0.96969 0.99813 1.01819 1.23487 0.90505 1.03534 0.84148 1.86762 1.45901 1.69888 1.22713 1.17862 0.81513 0.77388 0.82515 1.91081 1.59187 1.53002 1.36185 1.21167 0.98745 0.99713 0.92542 1.20889 0.99661 0.94103 0.97555 0.93134 0.91381 0.93195 0.78787 0.92146 0.85250 0.86140 0.90734 0.89239 0.87605 0.89394 0.90366 0.86661 0.86092 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.46 37.15 0.35 -2.25 16 2 C 0.19 3.55 2.77 -69.08 -0.19 3.36 16 3 H 0.09 1.84 7.43 -51.93 -0.39 1.45 16 4 N -0.76 -17.07 5.02 -56.35 -0.28 -17.35 16 5 C 0.56 15.85 7.71 -12.99 -0.10 15.75 16 6 O -0.58 -18.64 14.68 5.20 0.08 -18.56 16 7 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 10 N -0.77 -23.23 11.83 55.55 0.66 -22.57 16 11 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 15 C -0.06 -0.96 4.96 -104.59 -0.52 -1.48 16 16 C -0.10 -1.48 9.66 -39.61 -0.38 -1.87 16 17 C -0.10 -1.33 9.97 -39.39 -0.39 -1.73 16 18 C 0.13 1.63 4.14 -83.69 -0.35 1.29 16 19 N -0.58 -6.34 2.86 -119.56 -0.34 -6.69 16 20 C 0.11 0.65 6.47 -4.21 -0.03 0.62 16 21 C -0.17 -0.66 6.27 -26.41 -0.17 -0.82 16 22 C 0.06 0.30 7.20 37.41 0.27 0.57 16 23 O -0.34 -3.86 10.50 -39.29 -0.41 -4.27 16 24 C 0.65 9.07 8.27 53.59 0.44 9.52 16 25 O -0.51 -9.70 16.92 -19.41 -0.33 -10.02 16 26 C -0.10 -1.35 9.97 -39.39 -0.39 -1.75 16 27 C -0.10 -1.49 9.05 -39.61 -0.36 -1.84 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.38 7.64 6.84 -40.82 -0.28 7.36 16 32 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 33 H 0.13 1.66 8.03 -52.49 -0.42 1.24 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 42 H 0.13 1.76 6.90 -52.49 -0.36 1.40 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -38.63 358.32 -8.15 -46.78 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.64 Total: 5.97 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.25 Total: 5.86 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.03 Total: -46.60 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.66 Total: -32.86 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.63 -8.15 -46.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817284711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.072 kcal (2) G-P(sol) polarization free energy of solvation -38.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds