Wall clock time and date at job start Tue Mar 31 2020 12:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 N 1.46506 * 109.47276 * 239.99931 * 2 1 3 5 5 C 1.34778 * 119.99784 * 85.00085 * 4 2 1 6 6 O 1.21688 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.46368 * 120.00219 * 179.97438 * 5 4 2 8 8 H 1.08008 * 119.99801 * 0.02562 * 7 5 4 9 9 C 1.40048 * 120.00208 * 179.97438 * 7 5 4 10 10 N 1.30668 * 120.00239 * 0.02562 * 9 7 5 11 11 Si 1.86804 * 120.00031 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46886 * 90.00327 * 11 9 7 13 13 H 1.48495 * 109.47182 * 210.00248 * 11 9 7 14 14 H 1.48496 * 109.46986 * 330.00586 * 11 9 7 15 15 C 1.50701 * 109.47026 * 120.00490 * 2 1 3 16 16 C 1.38283 * 119.92391 * 259.99923 * 15 2 1 17 17 C 1.38116 * 120.06543 * 180.02562 * 16 15 2 18 18 C 1.38869 * 119.93474 * 0.02562 * 17 16 15 19 19 N 1.39948 * 120.07181 * 179.97438 * 18 17 16 20 20 C 1.46066 * 118.51685 * 89.47326 * 19 18 17 21 21 C 1.53138 * 109.91020 * 160.27659 * 20 19 18 22 22 C 1.53484 * 108.36423 * 47.97930 * 21 20 19 23 23 O 1.45432 * 108.11028 * 298.26850 * 22 21 20 24 24 C 1.33728 * 118.52222 * 269.20158 * 19 18 17 25 25 O 1.21515 * 118.46039 * 2.56843 * 24 19 18 26 26 C 1.38866 * 119.85478 * 0.24689 * 18 17 16 27 27 C 1.38120 * 119.93190 * 359.52317 * 26 18 17 28 28 H 1.09002 * 109.47584 * 299.99744 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99876 * 1 2 3 30 30 H 1.09002 * 109.47471 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00248 * 264.99933 * 4 2 1 32 32 H 0.96999 * 120.00279 * 179.97438 * 10 9 7 33 33 H 1.07995 * 119.97283 * 0.02562 * 16 15 2 34 34 H 1.08002 * 120.03694 * 180.02562 * 17 16 15 35 35 H 1.08992 * 109.39529 * 280.40905 * 20 19 18 36 36 H 1.08993 * 109.40117 * 40.23354 * 20 19 18 37 37 H 1.09003 * 109.68382 * 167.69548 * 21 20 19 38 38 H 1.08998 * 109.68320 * 288.22634 * 21 20 19 39 39 H 1.09001 * 109.73760 * 57.92133 * 22 21 20 40 40 H 1.08996 * 109.73299 * 178.61547 * 22 21 20 41 41 H 1.08003 * 120.03269 * 179.74886 * 26 18 17 42 42 H 1.07998 * 119.96341 * 180.20526 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8572 1.1623 -2.4119 7 6 2.6355 -0.7080 -3.5521 8 1 2.8924 -1.7560 -3.5037 9 6 2.7688 -0.0095 -4.7586 10 7 2.4575 1.2582 -4.8175 11 14 3.3928 -0.8896 -6.2835 12 1 2.2436 -1.4625 -7.0295 13 1 4.1148 0.0751 -7.1513 14 1 4.3160 -1.9813 -5.8820 15 6 2.0322 -0.7105 1.2304 16 6 2.4584 0.0210 2.3238 17 6 2.9198 -0.6271 3.4527 18 6 2.9560 -2.0149 3.4890 19 7 3.4235 -2.6746 4.6312 20 6 2.4670 -3.0116 5.6825 21 6 3.0395 -4.1176 6.5735 22 6 4.4753 -3.7345 6.9576 23 8 5.2618 -3.6474 5.7374 24 6 4.7248 -2.9730 4.7087 25 8 5.4553 -2.6168 3.8053 26 6 2.5327 -2.7465 2.3872 27 6 2.0679 -2.0925 1.2629 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.5502 1.7422 -5.6530 33 1 2.4304 1.1002 2.2950 34 1 3.2522 -0.0553 4.3066 35 1 2.2670 -2.1270 6.2870 36 1 1.5382 -3.3580 5.2294 37 1 2.4323 -4.2153 7.4734 38 1 3.0441 -5.0620 6.0292 39 1 4.4756 -2.7700 7.4653 40 1 4.8966 -4.4965 7.6134 41 1 2.5634 -3.8258 2.4107 42 1 1.7354 -2.6610 0.4070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817284711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:40 Heat of formation + Delta-G solvation = -108.170263 kcal Electronic energy + Delta-G solvation = -26091.149881 eV Core-core repulsion = 22228.280541 eV Total energy + Delta-G solvation = -3862.869340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41502 -40.67046 -39.31147 -38.34581 -37.38517 -35.63571 -34.51824 -33.10868 -32.12013 -31.65651 -29.66390 -28.18316 -27.42415 -25.43384 -24.22550 -23.89338 -22.50163 -21.16601 -20.55156 -19.52746 -19.32079 -18.76313 -17.69276 -17.55060 -17.01240 -16.58416 -16.21908 -15.94970 -15.77570 -15.62254 -15.16453 -15.03154 -14.81697 -14.71791 -14.39347 -14.25261 -14.16658 -13.49255 -13.35994 -13.32251 -12.97409 -12.76698 -12.74044 -12.63804 -12.60791 -12.40829 -12.23509 -12.01093 -11.86177 -11.64924 -11.40237 -10.92915 -10.19072 -9.96930 -9.90372 -9.67737 -9.46059 -8.28473 -6.84905 0.11457 0.37317 1.34557 1.39539 1.41388 1.54102 1.56381 2.24693 2.40326 2.47852 2.62435 3.14391 3.58655 3.61932 3.68648 3.71115 3.87090 3.95143 4.07545 4.20231 4.33275 4.36432 4.38416 4.48353 4.51419 4.57740 4.69663 4.73234 4.80015 4.93550 5.03278 5.05811 5.08671 5.19135 5.31814 5.33615 5.38960 5.46323 5.58311 5.89006 5.95399 6.23219 6.30515 6.56164 6.87515 6.92662 7.54399 8.50343 8.68287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002667 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.822718 B =10494.911695 C =11147.131567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.187 3.813 3 H 0.053 0.947 4 N -0.750 5.750 5 C 0.542 3.458 6 O -0.628 6.628 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.029 3.971 10 N -0.821 5.821 11 Si 0.996 3.004 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.252 1.252 15 C -0.077 4.077 16 C -0.108 4.108 17 C -0.102 4.102 18 C 0.127 3.873 19 N -0.569 5.569 20 C 0.095 3.905 21 C -0.163 4.163 22 C 0.045 3.955 23 O -0.359 6.359 24 C 0.654 3.346 25 O -0.579 6.579 26 C -0.104 4.104 27 C -0.105 4.105 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.274 0.726 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -13.290 27.394 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 H 0.072 0.928 4 N -0.404 5.404 5 C 0.346 3.654 6 O -0.515 6.515 7 C -0.612 4.612 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.450 5.450 11 Si 0.816 3.184 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.175 1.175 15 C -0.078 4.078 16 C -0.127 4.127 17 C -0.121 4.121 18 C 0.038 3.962 19 N -0.311 5.311 20 C -0.024 4.024 21 C -0.201 4.201 22 C -0.028 4.028 23 O -0.270 6.270 24 C 0.410 3.590 25 O -0.466 6.466 26 C -0.123 4.123 27 C -0.124 4.124 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.226 0.774 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.788 -12.263 26.971 29.759 hybrid contribution 0.295 -0.253 -0.892 0.973 sum -2.493 -12.515 26.079 29.034 Atomic orbital electron populations 1.22029 0.94277 1.02310 1.01339 1.19474 0.94339 0.95325 0.82752 0.92847 1.45987 1.72196 1.13280 1.08963 1.18524 0.77502 0.86041 0.83313 1.90545 1.56908 1.18393 1.85700 1.21430 1.47300 0.98235 0.94200 0.89744 1.26944 0.92822 0.95153 1.03664 1.70179 1.36693 1.10454 1.27718 0.85041 0.79059 0.78486 0.75837 1.18363 1.19791 1.17543 1.20081 0.98429 0.94475 0.94790 1.21050 0.98563 1.00711 0.92374 1.21313 0.98804 0.93263 0.98753 1.17359 1.00577 0.90902 0.87399 1.44712 1.06442 1.59648 1.20305 1.22113 0.92111 1.00084 0.88138 1.22594 0.96291 0.98407 1.02788 1.24028 0.91142 1.05492 0.82098 1.86720 1.47476 1.68914 1.23902 1.17968 0.81778 0.76890 0.82395 1.91026 1.60938 1.55889 1.38768 1.21327 0.98286 1.00606 0.92074 1.20931 0.99746 0.93462 0.98262 0.90130 0.95172 0.91393 0.77378 0.91586 0.84572 0.84248 0.88682 0.88050 0.83614 0.89868 0.88923 0.83932 0.84430 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.46 71.98 0.68 -4.26 16 2 C 0.19 7.37 2.77 44.24 0.12 7.49 16 3 H 0.05 2.44 7.43 -2.39 -0.02 2.43 16 4 N -0.75 -34.74 5.02 -450.40 -2.26 -37.00 16 5 C 0.54 32.15 7.71 86.36 0.67 32.81 16 6 O -0.63 -42.64 14.68 -4.31 -0.06 -42.70 16 7 C -0.58 -33.52 9.54 24.83 0.24 -33.29 16 8 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.03 1.67 5.50 85.31 0.47 2.14 16 10 N -0.82 -51.28 11.83 21.84 0.26 -51.02 16 11 Si 1.00 42.19 29.56 68.60 2.03 44.22 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 15 C -0.08 -2.43 4.96 -19.84 -0.10 -2.53 16 16 C -0.11 -3.03 9.66 22.25 0.21 -2.81 16 17 C -0.10 -2.53 9.97 22.39 0.22 -2.30 16 18 C 0.13 3.11 4.14 38.15 0.16 3.27 16 19 N -0.57 -11.33 2.86 -763.94 -2.18 -13.52 16 20 C 0.10 0.81 6.47 86.51 0.56 1.37 16 21 C -0.16 -0.56 6.27 30.80 0.19 -0.36 16 22 C 0.05 0.32 7.20 72.14 0.52 0.84 16 23 O -0.36 -7.60 10.50 -51.22 -0.54 -8.13 16 24 C 0.65 17.61 8.27 129.95 1.08 18.68 16 25 O -0.58 -22.25 16.92 19.91 0.34 -21.91 16 26 C -0.10 -2.60 9.97 22.39 0.22 -2.37 16 27 C -0.11 -2.95 9.05 22.25 0.20 -2.74 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.39 16.01 6.84 -92.71 -0.63 15.38 16 32 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 33 H 0.14 3.53 8.03 -2.91 -0.02 3.50 16 34 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 37 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.13 3.55 6.90 -2.91 -0.02 3.52 16 Total: -1.00 -90.13 358.32 3.43 -86.70 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.41 Total: 27.44 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.45 Total: 15.93 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -4.19 Total: -101.53 kcal Atomic # 8 Polarization: -72.48 SS G_CDS: -0.26 Total: -72.75 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -90.13 3.43 -86.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817284711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.470 kcal (2) G-P(sol) polarization free energy of solvation -90.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds