Wall clock time and date at job start Tue Mar 31 2020 12:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29804 * 120.00019 * 2 1 4 4 N 1.40100 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.46499 * 119.99934 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47197 * 29.98909 * 5 4 3 7 7 C 1.53005 * 109.46437 * 269.99419 * 5 4 3 8 8 C 1.50701 * 109.47260 * 149.99904 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.47384 * 119.99915 * 179.97438 * 2 1 3 17 17 C 1.39834 * 120.02086 * 179.97438 * 16 2 1 18 18 C 1.37633 * 120.00825 * 179.97438 * 17 16 2 19 19 C 1.39475 * 120.07130 * 0.02562 * 18 17 16 20 20 C 1.48322 * 119.97700 * 180.02562 * 19 18 17 21 21 N 1.34093 * 126.68083 * 359.68275 * 20 19 18 22 22 N 1.28987 * 107.26322 * 179.84051 * 21 20 19 23 23 N 1.28731 * 108.95756 * 0.43122 * 22 21 20 24 24 H 0.96998 * 125.33389 * 179.75333 * 23 22 21 25 25 N 1.28875 * 109.32911 * 359.72821 * 23 22 21 26 26 C 1.39660 * 120.04732 * 0.02562 * 19 18 17 27 27 F 1.35100 * 120.00920 * 179.97438 * 26 19 18 28 28 C 1.37924 * 119.98631 * 359.69978 * 26 19 18 29 29 H 1.09005 * 109.46605 * 90.00607 * 1 2 3 30 30 H 1.09001 * 109.47092 * 210.00163 * 1 2 3 31 31 H 1.09001 * 109.47065 * 330.00342 * 1 2 3 32 32 H 0.96999 * 119.99970 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.46658 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47438 * 299.99560 * 7 5 4 35 35 H 1.08996 * 109.47069 * 60.00420 * 7 5 4 36 36 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 37 37 H 1.08000 * 119.99538 * 0.02562 * 17 16 2 38 38 H 1.07999 * 119.96802 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.03693 * 180.27391 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1241 0.0000 4 7 1.4555 2.3374 -0.0005 5 6 2.1880 3.6061 -0.0011 6 1 3.1405 3.4756 -0.5147 7 6 2.4428 4.0484 1.4413 8 6 1.3736 4.6561 -0.7120 9 1 0.4072 4.4035 -1.1227 10 6 1.8650 5.9376 -0.8435 11 7 3.0419 6.2451 -0.3436 12 14 0.8589 7.2370 -1.7315 13 1 -0.4189 6.6410 -2.1974 14 1 0.5722 8.3607 -0.8038 15 1 1.6237 7.7426 -2.8997 16 6 2.2439 -1.2764 0.0006 17 6 3.6423 -1.2769 0.0000 18 6 4.3302 -2.4690 0.0011 19 6 3.6340 -3.6776 0.0022 20 6 4.3774 -4.9611 0.0039 21 7 5.7095 -5.1152 -0.0014 22 7 5.9482 -6.3828 0.0059 23 7 4.8291 -7.0191 0.0063 24 1 4.7326 -7.9842 0.0077 25 7 3.8572 -6.1727 0.0050 26 6 2.2374 -3.6802 0.0016 27 9 1.5639 -4.8513 0.0022 28 6 1.5459 -2.4868 0.0063 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.4856 2.3374 -0.0013 33 1 2.9882 4.9922 1.4409 34 1 1.4904 4.1790 1.9549 35 1 3.0319 3.2890 1.9555 36 1 3.3877 7.1466 -0.4365 37 1 4.1826 -0.3418 -0.0004 38 1 5.4102 -2.4687 0.0003 39 1 0.4659 -2.4879 0.0104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823953448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:06 Heat of formation + Delta-G solvation = 146.179627 kcal Electronic energy + Delta-G solvation = -24838.663633 eV Core-core repulsion = 20927.948928 eV Total energy + Delta-G solvation = -3910.714704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.92428 -44.61324 -39.25618 -37.01945 -34.86031 -34.36012 -33.58539 -32.01649 -30.92100 -30.11898 -28.59956 -26.95728 -25.31421 -24.92731 -24.65482 -22.53173 -22.03187 -20.64057 -19.51104 -19.23657 -17.75048 -17.33587 -16.85456 -16.33403 -16.01708 -15.62463 -15.24400 -15.05724 -14.53182 -14.30138 -14.00305 -13.88409 -13.52561 -13.07098 -12.64777 -12.56291 -12.54599 -12.22710 -12.07295 -11.64254 -11.57984 -11.49150 -11.39588 -11.21577 -11.17457 -11.09550 -10.83019 -10.50108 -10.30708 -10.21509 -9.64578 -9.12904 -8.99397 -8.73431 -8.55162 -6.92189 -6.20745 -4.29513 0.38254 0.96007 1.18936 2.00064 2.04251 2.83991 3.19347 3.27213 3.29737 3.46407 3.57770 3.79690 3.92963 4.19417 4.31378 4.71230 4.76187 5.04395 5.12260 5.20201 5.21267 5.32086 5.41169 5.55984 5.72826 5.78266 5.88779 6.02015 6.12993 6.19002 6.26314 6.50738 6.64863 6.77769 6.88745 6.91525 7.05487 7.49088 7.67891 7.75847 7.95254 8.03577 8.18300 8.76729 9.12875 9.37676 10.85173 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002272 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.987486 B =12321.220556 C =12930.275002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 N -0.175 5.175 4 N -0.608 5.608 5 C 0.293 3.707 6 H 0.045 0.955 7 C -0.151 4.151 8 C -0.532 4.532 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.903 3.097 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.062 3.938 17 C -0.117 4.117 18 C -0.042 4.042 19 C -0.077 4.077 20 C 0.225 3.775 21 N -0.266 5.266 22 N -0.053 5.053 23 N -0.231 5.231 24 H 0.474 0.526 25 N -0.287 5.287 26 C 0.142 3.858 27 F -0.125 7.125 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.373 0.627 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -22.508 1.501 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 N 0.009 4.991 4 N -0.345 5.345 5 C 0.191 3.809 6 H 0.063 0.937 7 C -0.210 4.210 8 C -0.571 4.571 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.059 3.941 17 C -0.137 4.137 18 C -0.063 4.063 19 C -0.082 4.082 20 C -0.054 4.054 21 N -0.140 5.140 22 N -0.048 5.048 23 N -0.076 5.076 24 H 0.328 0.672 25 N -0.139 5.139 26 C 0.121 3.879 27 F -0.104 7.104 28 C -0.183 4.183 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.238 -22.122 1.516 22.208 hybrid contribution -2.292 -0.061 -0.426 2.332 sum -1.053 -22.183 1.090 22.235 Atomic orbital electron populations 1.20981 0.92870 1.02827 1.02486 1.22112 0.92944 0.90576 1.13558 1.74060 1.28556 0.93241 1.03245 1.49252 1.06618 1.00335 1.78324 1.18653 0.92905 0.76098 0.93231 0.93736 1.22208 0.99332 1.01966 0.97492 1.21229 1.04560 0.94439 1.36883 0.92110 1.24855 0.95122 0.98249 0.95369 1.69889 1.17315 1.20431 1.44536 0.86363 0.80049 0.81169 0.79355 1.19761 1.20808 1.20788 1.18224 0.92430 0.90220 0.93270 1.21400 0.93281 0.98656 1.00358 1.20988 1.00802 0.89544 0.94921 1.17229 0.90020 0.88429 1.12552 1.23492 0.88347 0.92112 1.01426 1.76100 1.13584 1.06372 1.17904 1.78886 1.11052 0.99958 1.14873 1.47757 1.01170 1.12444 1.46274 0.67165 1.75148 1.17107 0.99755 1.21850 1.17305 0.88198 0.81657 1.00785 1.91541 1.79906 1.45533 1.93384 1.21041 1.01076 0.89662 1.06481 0.91232 0.91105 0.91702 0.78863 0.89030 0.95455 0.96702 0.92512 0.83370 0.83755 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.03 36.01 0.33 -1.35 16 2 C -0.01 -0.10 7.10 -79.73 -0.57 -0.67 16 3 N -0.17 -3.27 10.60 35.10 0.37 -2.90 16 4 N -0.61 -12.52 5.95 -5.88 -0.03 -12.56 16 5 C 0.29 7.08 3.23 -69.08 -0.22 6.86 16 6 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -3.54 9.30 37.16 0.35 -3.19 16 8 C -0.53 -13.70 8.73 -34.44 -0.30 -14.00 16 9 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 10 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 11 N -0.88 -23.88 11.33 55.43 0.63 -23.25 16 12 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.06 0.83 5.87 -105.02 -0.62 0.22 16 17 C -0.12 -1.52 9.56 -39.21 -0.37 -1.90 16 18 C -0.04 -0.50 9.68 -39.34 -0.38 -0.88 16 19 C -0.08 -0.96 5.89 -104.76 -0.62 -1.57 16 20 C 0.23 2.83 7.92 -156.28 -1.24 1.60 16 21 N -0.27 -3.36 12.22 32.14 0.39 -2.97 16 22 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 23 N -0.23 -1.85 7.90 60.35 0.48 -1.38 16 24 H 0.47 1.39 8.96 -340.35 -3.05 -1.66 16 25 N -0.29 -3.20 11.07 32.15 0.36 -2.85 16 26 C 0.14 1.75 7.26 -39.17 -0.28 1.46 16 27 F -0.13 -1.57 15.81 2.25 0.04 -1.53 16 28 C -0.16 -1.89 9.33 -39.14 -0.37 -2.26 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.72 6.45 -51.93 -0.33 0.38 16 31 H 0.06 0.86 6.35 -51.93 -0.33 0.53 16 32 H 0.37 7.11 6.36 -182.60 -1.16 5.95 16 33 H 0.09 2.33 6.08 -51.93 -0.32 2.02 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.15 2.02 7.54 -52.49 -0.40 1.62 16 38 H 0.14 1.53 7.87 -52.49 -0.41 1.11 16 39 H 0.15 1.41 6.33 -52.49 -0.33 1.08 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -29.62 342.01 -8.79 -38.41 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.57 Total: 2.47 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -4.39 Total: -14.02 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 3.00 Total: -45.64 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.62 -8.79 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.588 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds