Wall clock time and date at job start Tue Mar 31 2020 12:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29804 * 120.00019 * 2 1 4 4 N 1.40100 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.46499 * 119.99934 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47197 * 29.98909 * 5 4 3 7 7 C 1.53005 * 109.46437 * 269.99419 * 5 4 3 8 8 C 1.50701 * 109.47260 * 149.99904 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.47384 * 119.99915 * 179.97438 * 2 1 3 17 17 C 1.39834 * 120.02086 * 179.97438 * 16 2 1 18 18 C 1.37633 * 120.00825 * 179.97438 * 17 16 2 19 19 C 1.39475 * 120.07130 * 0.02562 * 18 17 16 20 20 C 1.48322 * 119.97700 * 180.02562 * 19 18 17 21 21 N 1.34093 * 126.68083 * 359.68275 * 20 19 18 22 22 N 1.28987 * 107.26322 * 179.84051 * 21 20 19 23 23 N 1.28731 * 108.95756 * 0.43122 * 22 21 20 24 24 H 0.96998 * 125.33389 * 179.75333 * 23 22 21 25 25 N 1.28875 * 109.32911 * 359.72821 * 23 22 21 26 26 C 1.39660 * 120.04732 * 0.02562 * 19 18 17 27 27 F 1.35100 * 120.00920 * 179.97438 * 26 19 18 28 28 C 1.37924 * 119.98631 * 359.69978 * 26 19 18 29 29 H 1.09005 * 109.46605 * 90.00607 * 1 2 3 30 30 H 1.09001 * 109.47092 * 210.00163 * 1 2 3 31 31 H 1.09001 * 109.47065 * 330.00342 * 1 2 3 32 32 H 0.96999 * 119.99970 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.46658 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47438 * 299.99560 * 7 5 4 35 35 H 1.08996 * 109.47069 * 60.00420 * 7 5 4 36 36 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 37 37 H 1.08000 * 119.99538 * 0.02562 * 17 16 2 38 38 H 1.07999 * 119.96802 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.03693 * 180.27391 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1241 0.0000 4 7 1.4555 2.3374 -0.0005 5 6 2.1880 3.6061 -0.0011 6 1 3.1405 3.4756 -0.5147 7 6 2.4428 4.0484 1.4413 8 6 1.3736 4.6561 -0.7120 9 1 0.4072 4.4035 -1.1227 10 6 1.8650 5.9376 -0.8435 11 7 3.0419 6.2451 -0.3436 12 14 0.8589 7.2370 -1.7315 13 1 -0.4189 6.6410 -2.1974 14 1 0.5722 8.3607 -0.8038 15 1 1.6237 7.7426 -2.8997 16 6 2.2439 -1.2764 0.0006 17 6 3.6423 -1.2769 0.0000 18 6 4.3302 -2.4690 0.0011 19 6 3.6340 -3.6776 0.0022 20 6 4.3774 -4.9611 0.0039 21 7 5.7095 -5.1152 -0.0014 22 7 5.9482 -6.3828 0.0059 23 7 4.8291 -7.0191 0.0063 24 1 4.7326 -7.9842 0.0077 25 7 3.8572 -6.1727 0.0050 26 6 2.2374 -3.6802 0.0016 27 9 1.5639 -4.8513 0.0022 28 6 1.5459 -2.4868 0.0063 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.4856 2.3374 -0.0013 33 1 2.9882 4.9922 1.4409 34 1 1.4904 4.1790 1.9549 35 1 3.0319 3.2890 1.9555 36 1 3.3877 7.1466 -0.4365 37 1 4.1826 -0.3418 -0.0004 38 1 5.4102 -2.4687 0.0003 39 1 0.4659 -2.4879 0.0104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823953448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:05 Heat of formation + Delta-G solvation = 127.869409 kcal Electronic energy + Delta-G solvation = -24839.457623 eV Core-core repulsion = 20927.948928 eV Total energy + Delta-G solvation = -3911.508695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.89577 -45.46837 -40.31354 -38.36723 -36.33270 -35.39436 -34.66193 -33.52394 -32.08297 -31.32187 -29.80330 -28.36571 -27.24973 -25.84035 -25.69564 -23.54362 -23.05221 -22.30654 -20.69549 -20.17376 -19.10331 -18.18353 -18.01913 -17.73661 -17.02172 -16.97421 -16.59477 -16.33193 -15.90756 -15.23551 -15.15481 -14.98989 -14.87443 -14.54976 -14.06040 -13.83948 -13.50499 -13.45026 -13.20582 -13.15440 -12.90262 -12.72997 -12.59666 -12.47088 -12.41405 -12.29463 -12.19989 -12.13597 -12.06711 -11.74201 -11.09894 -10.82353 -10.56629 -10.02678 -9.76557 -8.39059 -8.15433 -6.32611 -0.63183 0.11136 0.20749 0.98187 1.40780 1.43653 1.45312 1.56359 1.71403 2.14126 2.47017 2.57694 2.74575 3.00043 3.13281 3.21001 3.60092 3.78879 4.08479 4.19761 4.24468 4.33946 4.41705 4.53436 4.65466 4.74407 4.82572 4.91194 5.00956 5.04966 5.14477 5.18091 5.20492 5.43445 5.46208 5.59832 5.60016 5.76334 5.82191 5.91279 6.19840 6.41656 6.85970 7.08623 7.38788 7.75192 8.88893 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002272 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.987486 B =12321.220556 C =12930.275002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.031 3.969 3 N -0.227 5.227 4 N -0.629 5.629 5 C 0.305 3.695 6 H 0.005 0.995 7 C -0.137 4.137 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.019 3.981 11 N -0.913 5.913 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.282 1.282 16 C 0.037 3.963 17 C -0.115 4.115 18 C -0.040 4.040 19 C -0.070 4.070 20 C 0.209 3.791 21 N -0.288 5.288 22 N -0.054 5.054 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.290 5.290 26 C 0.136 3.864 27 F -0.124 7.124 28 C -0.138 4.138 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.378 0.622 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -24.912 1.274 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 N -0.039 5.039 4 N -0.367 5.367 5 C 0.201 3.799 6 H 0.023 0.977 7 C -0.196 4.196 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.182 4.182 11 N -0.552 5.552 12 Si 0.793 3.207 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.207 1.207 16 C 0.033 3.967 17 C -0.136 4.136 18 C -0.060 4.060 19 C -0.076 4.076 20 C -0.071 4.071 21 N -0.161 5.161 22 N -0.049 5.049 23 N -0.051 5.051 24 H 0.354 0.646 25 N -0.143 5.143 26 C 0.115 3.885 27 F -0.103 7.103 28 C -0.159 4.159 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.217 0.783 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.176 -24.565 1.291 24.600 hybrid contribution -1.789 0.228 -0.352 1.838 sum -1.965 -24.337 0.940 24.435 Atomic orbital electron populations 1.21120 0.90690 1.04118 1.03685 1.22779 0.94736 0.90291 1.07862 1.74078 1.29097 0.93393 1.07329 1.48613 1.06236 1.00035 1.81818 1.18167 0.91336 0.77807 0.92596 0.97735 1.22023 0.99111 1.00826 0.97654 1.21528 1.04702 0.95166 1.36937 0.92013 1.25678 0.96102 1.00281 0.96096 1.70016 1.18706 1.20874 1.45582 0.85358 0.78707 0.78540 0.78081 1.19033 1.20351 1.20746 1.18235 0.92541 0.90075 0.95810 1.21384 0.93492 0.98674 1.00034 1.21018 1.01319 0.88984 0.94694 1.17393 0.90382 0.88681 1.11125 1.23523 0.88502 0.92499 1.02546 1.76093 1.13814 1.07328 1.18822 1.78838 1.11530 0.99552 1.14979 1.47814 1.00072 1.13311 1.43878 0.64611 1.75099 1.17796 0.99681 1.21696 1.17321 0.88097 0.81863 1.01237 1.91547 1.79825 1.45468 1.93421 1.21178 1.02202 0.88486 1.03989 0.89948 0.87870 0.92319 0.78320 0.91360 0.95094 0.96132 0.92455 0.84540 0.82735 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.03 71.24 0.64 -2.49 16 2 C 0.03 0.92 7.10 45.27 0.32 1.25 16 3 N -0.23 -8.63 10.60 -42.87 -0.45 -9.09 16 4 N -0.63 -26.62 5.95 -172.51 -1.03 -27.64 16 5 C 0.30 15.35 3.23 44.25 0.14 15.50 16 6 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 7 C -0.14 -6.66 9.30 71.98 0.67 -5.99 16 8 C -0.54 -28.70 8.73 25.60 0.22 -28.48 16 9 H 0.06 3.16 7.79 -2.91 -0.02 3.13 16 10 C 0.02 1.00 5.31 84.65 0.45 1.44 16 11 N -0.91 -50.76 11.33 21.45 0.24 -50.52 16 12 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.04 0.93 5.87 -20.12 -0.12 0.81 16 17 C -0.12 -2.96 9.56 22.51 0.22 -2.74 16 18 C -0.04 -0.91 9.68 22.43 0.22 -0.70 16 19 C -0.07 -1.63 5.89 -19.95 -0.12 -1.75 16 20 C 0.21 4.86 7.92 137.31 1.09 5.94 16 21 N -0.29 -6.84 12.22 -52.23 -0.64 -7.48 16 22 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 23 N -0.20 -2.71 7.90 37.02 0.29 -2.41 16 24 H 0.49 1.47 8.96 -347.53 -3.12 -1.64 16 25 N -0.29 -5.78 11.07 -52.18 -0.58 -6.35 16 26 C 0.14 3.00 7.26 22.54 0.16 3.16 16 27 F -0.12 -2.75 15.81 44.97 0.71 -2.04 16 28 C -0.14 -2.81 9.33 22.56 0.21 -2.60 16 29 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.10 1.68 6.45 -2.39 -0.02 1.67 16 31 H 0.06 1.47 6.35 -2.39 -0.02 1.45 16 32 H 0.38 14.61 6.36 -213.32 -1.36 13.26 16 33 H 0.07 3.62 6.08 -2.38 -0.01 3.61 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.27 13.97 8.31 -92.71 -0.77 13.19 16 37 H 0.14 3.84 7.54 -2.91 -0.02 3.82 16 38 H 0.16 3.16 7.87 -2.91 -0.02 3.14 16 39 H 0.17 2.57 6.33 -2.91 -0.02 2.55 16 Total: -1.00 -65.03 342.01 1.85 -63.17 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -3.33 Total: 15.77 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.11 Total: -16.65 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -1.66 Total: -104.03 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.71 Total: -2.04 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -65.03 1.85 -63.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.044 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds