Wall clock time and date at job start Tue Mar 31 2020 12:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29804 * 119.99886 * 2 1 4 4 N 1.40095 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.46506 * 119.99798 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47065 * 329.99164 * 5 4 3 7 7 C 1.52998 * 109.47310 * 89.99849 * 5 4 3 8 8 C 1.50701 * 109.46737 * 209.99795 * 5 4 3 9 9 H 1.08001 * 119.99977 * 359.97438 * 8 5 4 10 10 C 1.37882 * 119.99927 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99626 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00131 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46635 * 60.00041 * 12 10 8 14 14 H 1.48496 * 109.47058 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47208 * 300.00162 * 12 10 8 16 16 C 1.47382 * 120.00133 * 180.02562 * 2 1 3 17 17 C 1.39834 * 120.02427 * 180.02562 * 16 2 1 18 18 C 1.37635 * 120.01070 * 179.97438 * 17 16 2 19 19 C 1.39473 * 120.06744 * 0.04037 * 18 17 16 20 20 C 1.48326 * 119.97139 * 179.97438 * 19 18 17 21 21 N 1.34086 * 126.68601 * 359.69323 * 20 19 18 22 22 N 1.28987 * 107.26782 * 179.83096 * 21 20 19 23 23 N 1.28733 * 108.95503 * 0.43403 * 22 21 20 24 24 H 0.96991 * 125.33307 * 179.73846 * 23 22 21 25 25 N 1.28872 * 109.32882 * 359.72569 * 23 22 21 26 26 C 1.39656 * 120.05194 * 359.97438 * 19 18 17 27 27 F 1.35101 * 120.01153 * 179.97438 * 26 19 18 28 28 C 1.37936 * 119.98504 * 359.69332 * 26 19 18 29 29 H 1.08999 * 109.47280 * 89.99759 * 1 2 3 30 30 H 1.08997 * 109.47027 * 209.99718 * 1 2 3 31 31 H 1.09000 * 109.47497 * 329.99952 * 1 2 3 32 32 H 0.96999 * 120.00122 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47223 * 59.99463 * 7 5 4 34 34 H 1.08992 * 109.47174 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.46785 * 299.99946 * 7 5 4 36 36 H 0.97006 * 119.99899 * 179.97438 * 11 10 8 37 37 H 1.07992 * 119.99484 * 359.97438 * 17 16 2 38 38 H 1.08001 * 119.96344 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.03081 * 180.29721 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1559 1.1241 0.0000 4 7 1.4554 2.3374 0.0005 5 6 2.1880 3.6062 0.0011 6 1 3.1402 3.4756 0.5150 7 6 2.4430 4.0485 -1.4412 8 6 1.3734 4.6561 0.7120 9 1 0.4066 4.4036 1.1219 10 6 1.8624 5.9390 0.8390 11 7 3.0399 6.2462 0.3403 12 14 0.8525 7.2406 1.7195 13 1 0.6039 6.8111 3.1192 14 1 1.5956 8.5263 1.7213 15 1 -0.4445 7.4188 1.0186 16 6 2.2439 -1.2763 -0.0006 17 6 3.6422 -1.2769 0.0000 18 6 4.3301 -2.4690 0.0000 19 6 3.6339 -3.6776 -0.0014 20 6 4.3775 -4.9610 -0.0020 21 7 5.7094 -5.1152 -0.0071 22 7 5.9482 -6.3828 -0.0020 23 7 4.8291 -7.0191 -0.0033 24 1 4.7326 -7.9842 -0.0039 25 7 3.8572 -6.1727 -0.0033 26 6 2.2374 -3.6802 -0.0023 27 9 1.5638 -4.8513 -0.0041 28 6 1.5458 -2.4867 0.0047 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.4854 2.3374 0.0005 33 1 1.4906 4.1790 -1.9550 34 1 2.9876 4.9926 -1.4407 35 1 3.0321 3.2891 -1.9553 36 1 3.3838 7.1489 0.4293 37 1 4.1825 -0.3418 0.0004 38 1 5.4102 -2.4686 0.0008 39 1 0.4658 -2.4879 0.0088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823953449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:10 Heat of formation + Delta-G solvation = 146.280925 kcal Electronic energy + Delta-G solvation = -24838.537776 eV Core-core repulsion = 20927.827464 eV Total energy + Delta-G solvation = -3910.710312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.92354 -44.61304 -39.25561 -37.01925 -34.85998 -34.36003 -33.58458 -32.01583 -30.91952 -30.11822 -28.59768 -26.95902 -25.30833 -24.92754 -24.65373 -22.53130 -22.03130 -20.63691 -19.51088 -19.23657 -17.75129 -17.33562 -16.85488 -16.33184 -16.01673 -15.62406 -15.23935 -15.05009 -14.53631 -14.30222 -13.99580 -13.94108 -13.47319 -13.06325 -12.64241 -12.56372 -12.52269 -12.23273 -12.12744 -11.63177 -11.56816 -11.45811 -11.40822 -11.21882 -11.18109 -11.06950 -10.86905 -10.47842 -10.29251 -10.23846 -9.64984 -9.13813 -8.99627 -8.73273 -8.54497 -6.92233 -6.20278 -4.29289 0.38322 0.96020 1.18954 2.00105 2.04292 2.84071 3.21670 3.26908 3.27558 3.46407 3.57711 3.79648 3.92989 4.19424 4.31589 4.71363 4.76261 5.04478 5.12442 5.20261 5.21324 5.32131 5.41732 5.56084 5.72904 5.77784 5.88591 6.02048 6.13058 6.19208 6.26390 6.50889 6.65082 6.77859 6.88874 6.91850 7.05710 7.48959 7.68057 7.75843 7.95277 8.03710 8.18494 8.76283 9.12942 9.37707 10.85480 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.002271 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.461389 B =12323.847761 C =12934.138674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.007 4.007 3 N -0.175 5.175 4 N -0.608 5.608 5 C 0.294 3.706 6 H 0.044 0.956 7 C -0.150 4.150 8 C -0.534 4.534 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.062 3.938 17 C -0.117 4.117 18 C -0.042 4.042 19 C -0.077 4.077 20 C 0.226 3.774 21 N -0.266 5.266 22 N -0.053 5.053 23 N -0.231 5.231 24 H 0.474 0.526 25 N -0.287 5.287 26 C 0.142 3.858 27 F -0.125 7.125 28 C -0.161 4.161 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.373 0.627 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -22.475 -1.496 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 N 0.009 4.991 4 N -0.345 5.345 5 C 0.192 3.808 6 H 0.062 0.938 7 C -0.210 4.210 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.059 3.941 17 C -0.137 4.137 18 C -0.063 4.063 19 C -0.082 4.082 20 C -0.054 4.054 21 N -0.140 5.140 22 N -0.048 5.048 23 N -0.076 5.076 24 H 0.328 0.672 25 N -0.139 5.139 26 C 0.121 3.879 27 F -0.104 7.104 28 C -0.183 4.183 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.211 0.789 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.265 -22.082 -1.518 22.171 hybrid contribution -2.318 -0.073 0.435 2.360 sum -1.053 -22.155 -1.083 22.207 Atomic orbital electron populations 1.20981 0.92875 1.02963 1.02380 1.22109 0.92944 0.90576 1.13569 1.74059 1.28558 0.93242 1.03236 1.49254 1.06616 1.00341 1.78312 1.18639 0.92882 0.76074 0.93224 0.93769 1.22204 0.99339 1.01959 0.97473 1.21156 1.04570 0.94427 1.37141 0.92235 1.24853 0.95127 0.98227 0.95332 1.69872 1.17297 1.20535 1.44455 0.86472 0.79967 0.80398 0.80078 1.20141 1.21038 1.20143 1.18224 0.92430 0.90222 0.93268 1.21400 0.93280 0.98656 1.00358 1.20988 1.00801 0.89544 0.94923 1.17228 0.90019 0.88427 1.12552 1.23494 0.88345 0.92111 1.01427 1.76096 1.13588 1.06374 1.17902 1.78888 1.11050 0.99954 1.14880 1.47755 1.01173 1.12444 1.46269 0.67168 1.75149 1.17108 0.99756 1.21850 1.17308 0.88198 0.81657 1.00787 1.91542 1.79906 1.45533 1.93385 1.21044 1.01073 0.89660 1.06479 0.91332 0.91079 0.91598 0.78869 0.95455 0.89014 0.96700 0.92396 0.83372 0.83754 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.03 36.00 0.33 -1.35 16 2 C -0.01 -0.10 7.10 -79.73 -0.57 -0.67 16 3 N -0.17 -3.27 10.60 35.10 0.37 -2.90 16 4 N -0.61 -12.53 5.95 -5.88 -0.04 -12.56 16 5 C 0.29 7.10 3.23 -69.08 -0.22 6.88 16 6 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.15 -3.53 9.29 37.16 0.35 -3.19 16 8 C -0.53 -13.75 8.74 -34.44 -0.30 -14.05 16 9 H 0.06 1.50 7.79 -52.49 -0.41 1.09 16 10 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 11 N -0.88 -23.88 11.32 55.43 0.63 -23.25 16 12 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.06 0.84 5.87 -105.02 -0.62 0.22 16 17 C -0.12 -1.52 9.56 -39.20 -0.37 -1.90 16 18 C -0.04 -0.50 9.68 -39.34 -0.38 -0.89 16 19 C -0.08 -0.96 5.89 -104.76 -0.62 -1.57 16 20 C 0.23 2.83 7.92 -156.28 -1.24 1.60 16 21 N -0.27 -3.36 12.22 32.14 0.39 -2.97 16 22 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 23 N -0.23 -1.85 7.90 60.35 0.48 -1.38 16 24 H 0.47 1.39 8.96 -340.37 -3.05 -1.66 16 25 N -0.29 -3.21 11.07 32.16 0.36 -2.85 16 26 C 0.14 1.75 7.26 -39.16 -0.28 1.46 16 27 F -0.13 -1.57 15.81 2.25 0.04 -1.53 16 28 C -0.16 -1.89 9.33 -39.14 -0.37 -2.26 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.73 6.45 -51.93 -0.34 0.39 16 31 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 32 H 0.37 7.11 6.36 -182.60 -1.16 5.95 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.15 2.02 7.54 -52.49 -0.40 1.63 16 38 H 0.14 1.53 7.87 -52.49 -0.41 1.11 16 39 H 0.15 1.41 6.33 -52.49 -0.33 1.08 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -29.58 342.00 -8.79 -38.37 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.57 Total: 2.54 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -4.39 Total: -14.04 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 3.00 Total: -45.65 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.58 -8.79 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.647 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds