Wall clock time and date at job start Tue Mar 31 2020 12:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29795 * 119.99920 * 2 1 4 4 N 1.40098 * 119.99963 * 0.02562 * 3 2 1 5 5 C 1.46500 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46845 * 30.00557 * 5 4 3 7 7 C 1.52997 * 109.47473 * 270.00008 * 5 4 3 8 8 C 1.50706 * 109.47187 * 149.99611 * 5 4 3 9 9 H 1.07998 * 119.99629 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99955 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00308 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48507 * 109.46754 * 90.00468 * 12 10 8 14 14 H 1.48498 * 109.47278 * 210.00299 * 12 10 8 15 15 H 1.48498 * 109.47109 * 330.00728 * 12 10 8 16 16 C 1.47362 * 119.99941 * 180.02562 * 2 1 3 17 17 C 1.39790 * 120.05202 * 359.97438 * 16 2 1 18 18 C 1.37640 * 119.98792 * 179.97438 * 17 16 2 19 19 C 1.39493 * 120.08910 * 359.97438 * 18 17 16 20 20 C 1.48361 * 119.94702 * 179.97438 * 19 18 17 21 21 N 1.34082 * 126.68176 * 359.68654 * 20 19 18 22 22 N 1.28990 * 107.26052 * 179.83668 * 21 20 19 23 23 N 1.28721 * 108.95975 * 0.43963 * 22 21 20 24 24 H 0.97001 * 125.33582 * 179.74850 * 23 22 21 25 25 N 1.28865 * 109.33012 * 359.71615 * 23 22 21 26 26 C 1.39418 * 120.10523 * 0.02562 * 19 18 17 27 27 C 1.37920 * 120.00770 * 359.73650 * 26 19 18 28 28 F 1.35099 * 120.04660 * 180.27579 * 27 26 19 29 29 H 1.08996 * 109.47097 * 89.99844 * 1 2 3 30 30 H 1.09001 * 109.46886 * 209.99663 * 1 2 3 31 31 H 1.08998 * 109.47156 * 329.99207 * 1 2 3 32 32 H 0.97002 * 120.00235 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 34 34 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 35 35 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 36 36 H 0.96998 * 120.00365 * 179.97438 * 11 10 8 37 37 H 1.08004 * 120.00568 * 359.95590 * 17 16 2 38 38 H 1.08004 * 119.95440 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.99478 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1560 1.1241 0.0000 4 7 1.4555 2.3373 0.0005 5 6 2.1880 3.6061 0.0011 6 1 3.1403 3.4760 -0.5129 7 6 2.4430 4.0472 1.4437 8 6 1.3735 4.6567 -0.7089 9 1 0.4068 4.4045 -1.1192 10 6 1.8621 5.9399 -0.8339 11 7 3.0390 6.2470 -0.3339 12 14 0.8523 7.2423 -1.7133 13 1 -0.0215 7.9363 -0.7335 14 1 1.7623 8.2279 -2.3502 15 1 0.0131 6.5979 -2.7554 16 6 2.2439 -1.2762 -0.0006 17 6 1.5460 -2.4874 -0.0006 18 6 2.2355 -3.6787 -0.0016 19 6 3.6304 -3.6793 -0.0033 20 6 4.3705 -4.9652 -0.0038 21 7 3.8381 -6.1957 0.0029 22 7 4.8166 -7.0361 -0.0039 23 7 5.9270 -6.3851 -0.0052 24 1 6.8112 -6.7840 -0.0064 25 7 5.6800 -5.1204 -0.0053 26 6 4.3303 -2.4735 -0.0033 27 6 3.6436 -1.2774 -0.0072 28 9 4.3210 -0.1085 -0.0128 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.4855 2.3374 0.0005 33 1 3.0321 3.2873 1.9573 34 1 1.4906 4.1773 1.9576 35 1 2.9884 4.9910 1.4441 36 1 3.3829 7.1497 -0.4221 37 1 0.4660 -2.4885 0.0006 38 1 1.6958 -4.6142 -0.0012 39 1 5.4103 -2.4761 -0.0049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823953627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:14 Heat of formation + Delta-G solvation = 150.356813 kcal Electronic energy + Delta-G solvation = -25035.577954 eV Core-core repulsion = 21125.044386 eV Total energy + Delta-G solvation = -3910.533568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.42429 -44.69207 -39.18447 -37.03495 -34.83118 -34.42187 -33.59580 -31.98007 -30.82707 -30.14961 -28.52518 -26.97105 -25.29023 -24.94805 -24.67580 -22.32550 -22.15708 -20.54689 -19.50226 -19.22892 -17.64269 -17.38325 -16.93705 -16.29072 -15.71725 -15.29193 -15.26362 -14.99948 -14.30278 -14.22093 -14.12397 -13.71834 -13.49231 -12.91052 -12.70243 -12.65111 -12.60798 -12.20721 -12.01028 -11.63263 -11.61295 -11.52194 -11.37360 -11.20050 -11.10354 -11.05455 -10.79528 -10.46450 -10.25723 -10.19148 -9.51007 -9.08785 -8.96566 -8.69314 -8.50076 -6.83467 -6.15893 -4.24708 0.37373 0.90834 1.21572 1.97140 1.98034 2.91211 3.22666 3.29295 3.31634 3.40785 3.69262 3.78662 3.91719 4.33762 4.41440 4.75928 4.81500 4.98433 5.07280 5.16588 5.21079 5.26536 5.45023 5.54120 5.75138 5.76963 5.96303 6.05702 6.09829 6.18242 6.21150 6.41519 6.68557 6.82663 6.94831 6.98033 7.12025 7.54756 7.74127 7.81680 7.89026 8.09779 8.24507 8.81615 9.21527 9.42023 10.89956 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.031063 B = 0.002381 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.178311 B =11758.453453 C =12293.979973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.013 4.013 3 N -0.167 5.167 4 N -0.609 5.609 5 C 0.294 3.706 6 H 0.045 0.955 7 C -0.150 4.150 8 C -0.531 4.531 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.003 4.003 17 C -0.096 4.096 18 C -0.082 4.082 19 C -0.013 4.013 20 C 0.228 3.772 21 N -0.268 5.268 22 N -0.052 5.052 23 N -0.228 5.228 24 H 0.475 0.525 25 N -0.294 5.294 26 C -0.114 4.114 27 C 0.111 3.889 28 F -0.110 7.110 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.372 0.628 33 H 0.014 0.986 34 H 0.026 0.974 35 H 0.091 0.909 36 H 0.265 0.735 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -22.853 1.458 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.198 4.198 3 N 0.017 4.983 4 N -0.346 5.346 5 C 0.192 3.808 6 H 0.063 0.937 7 C -0.209 4.209 8 C -0.571 4.571 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.007 4.007 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.017 4.017 20 C -0.052 4.052 21 N -0.141 5.141 22 N -0.047 5.047 23 N -0.074 5.074 24 H 0.329 0.671 25 N -0.145 5.145 26 C -0.135 4.135 27 C 0.089 3.911 28 F -0.088 7.088 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.210 0.790 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.982 -22.654 1.475 22.897 hybrid contribution -0.917 0.976 -0.414 1.402 sum 2.065 -21.678 1.062 21.802 Atomic orbital electron populations 1.20940 0.92596 1.02796 1.02411 1.22098 0.93091 0.90449 1.14197 1.74339 1.28027 0.93163 1.02748 1.49262 1.06491 1.00499 1.78360 1.18625 0.92920 0.76082 0.93182 0.93749 1.22200 0.99245 1.01935 0.97557 1.21203 1.04542 0.94349 1.36977 0.92187 1.24858 0.95123 0.98242 0.95394 1.69887 1.17335 1.20351 1.44621 0.86417 0.79790 0.81035 0.79686 1.20516 1.20996 1.19866 1.18588 0.90682 0.92522 0.98883 1.20994 1.00507 0.89699 1.00443 1.21001 0.91919 0.98952 0.98369 1.16870 0.92006 0.86042 1.06830 1.23624 0.86231 0.94242 1.01075 1.76089 1.21816 0.98290 1.17908 1.78893 0.88537 1.22462 1.14811 1.47719 1.11492 1.02087 1.46137 0.67065 1.74999 1.17975 0.99482 1.22081 1.20963 1.01087 0.89841 1.01603 1.17512 0.89222 0.81700 1.02640 1.91637 1.79213 1.44916 1.93062 0.91295 0.91057 0.91764 0.79044 0.96732 0.95526 0.89049 0.92506 0.83908 0.84147 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.03 36.01 0.33 -1.35 16 2 C -0.01 -0.22 7.10 -79.74 -0.57 -0.79 16 3 N -0.17 -3.43 9.52 35.09 0.33 -3.09 16 4 N -0.61 -13.35 5.95 -5.88 -0.04 -13.39 16 5 C 0.29 7.48 3.23 -69.08 -0.22 7.25 16 6 H 0.04 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.15 -3.70 9.29 37.16 0.35 -3.35 16 8 C -0.53 -14.15 8.74 -34.44 -0.30 -14.45 16 9 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 10 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 11 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 12 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.00 -0.04 5.88 -104.95 -0.62 -0.65 16 17 C -0.10 -1.04 9.35 -39.22 -0.37 -1.40 16 18 C -0.08 -0.84 9.68 -39.33 -0.38 -1.22 16 19 C -0.01 -0.15 5.88 -104.82 -0.62 -0.76 16 20 C 0.23 2.58 7.93 -156.27 -1.24 1.34 16 21 N -0.27 -3.04 12.22 32.15 0.39 -2.65 16 22 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 23 N -0.23 -1.61 7.90 60.35 0.48 -1.14 16 24 H 0.48 1.01 8.96 -340.36 -3.05 -2.04 16 25 N -0.29 -2.93 12.07 32.16 0.39 -2.54 16 26 C -0.11 -1.44 9.66 -39.26 -0.38 -1.82 16 27 C 0.11 1.69 7.27 -39.05 -0.28 1.40 16 28 F -0.11 -2.03 15.34 2.25 0.03 -1.99 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.71 6.46 -51.93 -0.34 0.38 16 31 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 32 H 0.37 7.45 6.36 -182.60 -1.16 6.29 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.14 1.17 6.34 -52.48 -0.33 0.84 16 38 H 0.14 1.19 7.87 -52.48 -0.41 0.78 16 39 H 0.14 1.65 7.87 -52.49 -0.41 1.24 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -31.40 341.91 -8.82 -40.22 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.59 Total: 1.54 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.40 Total: -14.10 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 3.00 Total: -46.43 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.40 -8.82 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.580 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds