Wall clock time and date at job start Tue Mar 31 2020 12:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29795 * 119.99920 * 2 1 4 4 N 1.40098 * 119.99963 * 0.02562 * 3 2 1 5 5 C 1.46500 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46845 * 30.00557 * 5 4 3 7 7 C 1.52997 * 109.47473 * 270.00008 * 5 4 3 8 8 C 1.50706 * 109.47187 * 149.99611 * 5 4 3 9 9 H 1.07998 * 119.99629 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99955 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00308 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48507 * 109.46754 * 90.00468 * 12 10 8 14 14 H 1.48498 * 109.47278 * 210.00299 * 12 10 8 15 15 H 1.48498 * 109.47109 * 330.00728 * 12 10 8 16 16 C 1.47362 * 119.99941 * 180.02562 * 2 1 3 17 17 C 1.39790 * 120.05202 * 359.97438 * 16 2 1 18 18 C 1.37640 * 119.98792 * 179.97438 * 17 16 2 19 19 C 1.39493 * 120.08910 * 359.97438 * 18 17 16 20 20 C 1.48361 * 119.94702 * 179.97438 * 19 18 17 21 21 N 1.34082 * 126.68176 * 359.68654 * 20 19 18 22 22 N 1.28990 * 107.26052 * 179.83668 * 21 20 19 23 23 N 1.28721 * 108.95975 * 0.43963 * 22 21 20 24 24 H 0.97001 * 125.33582 * 179.74850 * 23 22 21 25 25 N 1.28865 * 109.33012 * 359.71615 * 23 22 21 26 26 C 1.39418 * 120.10523 * 0.02562 * 19 18 17 27 27 C 1.37920 * 120.00770 * 359.73650 * 26 19 18 28 28 F 1.35099 * 120.04660 * 180.27579 * 27 26 19 29 29 H 1.08996 * 109.47097 * 89.99844 * 1 2 3 30 30 H 1.09001 * 109.46886 * 209.99663 * 1 2 3 31 31 H 1.08998 * 109.47156 * 329.99207 * 1 2 3 32 32 H 0.97002 * 120.00235 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 34 34 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 35 35 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 36 36 H 0.96998 * 120.00365 * 179.97438 * 11 10 8 37 37 H 1.08004 * 120.00568 * 359.95590 * 17 16 2 38 38 H 1.08004 * 119.95440 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.99478 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1560 1.1241 0.0000 4 7 1.4555 2.3373 0.0005 5 6 2.1880 3.6061 0.0011 6 1 3.1403 3.4760 -0.5129 7 6 2.4430 4.0472 1.4437 8 6 1.3735 4.6567 -0.7089 9 1 0.4068 4.4045 -1.1192 10 6 1.8621 5.9399 -0.8339 11 7 3.0390 6.2470 -0.3339 12 14 0.8523 7.2423 -1.7133 13 1 -0.0215 7.9363 -0.7335 14 1 1.7623 8.2279 -2.3502 15 1 0.0131 6.5979 -2.7554 16 6 2.2439 -1.2762 -0.0006 17 6 1.5460 -2.4874 -0.0006 18 6 2.2355 -3.6787 -0.0016 19 6 3.6304 -3.6793 -0.0033 20 6 4.3705 -4.9652 -0.0038 21 7 3.8381 -6.1957 0.0029 22 7 4.8166 -7.0361 -0.0039 23 7 5.9270 -6.3851 -0.0052 24 1 6.8112 -6.7840 -0.0064 25 7 5.6800 -5.1204 -0.0053 26 6 4.3303 -2.4735 -0.0033 27 6 3.6436 -1.2774 -0.0072 28 9 4.3210 -0.1085 -0.0128 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.4855 2.3374 0.0005 33 1 3.0321 3.2873 1.9573 34 1 1.4906 4.1773 1.9576 35 1 2.9884 4.9910 1.4441 36 1 3.3829 7.1497 -0.4221 37 1 0.4660 -2.4885 0.0006 38 1 1.6958 -4.6142 -0.0012 39 1 5.4103 -2.4761 -0.0049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823953627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:13 Heat of formation + Delta-G solvation = 129.623279 kcal Electronic energy + Delta-G solvation = -25036.477028 eV Core-core repulsion = 21125.044386 eV Total energy + Delta-G solvation = -3911.432641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.70562 -45.46308 -40.21939 -38.44213 -36.36476 -35.35768 -34.65954 -33.52685 -31.95577 -31.39961 -29.74152 -28.44029 -27.28246 -25.91588 -25.58565 -23.30877 -23.20851 -22.27255 -20.62059 -20.24553 -19.01609 -18.24473 -18.14265 -17.58716 -17.18712 -16.72137 -16.53302 -16.35628 -15.71746 -15.26004 -15.05733 -14.97655 -14.85896 -14.51517 -14.05699 -13.88133 -13.59715 -13.54242 -13.18204 -13.09355 -12.89283 -12.72972 -12.56286 -12.50518 -12.40179 -12.32364 -12.17573 -12.08766 -12.07099 -11.71018 -11.12131 -10.75660 -10.58200 -10.02404 -9.75439 -8.37700 -8.16505 -6.35089 -0.60351 0.13531 0.23174 1.00975 1.41611 1.42967 1.43888 1.54448 1.75941 2.17359 2.47099 2.56694 2.75262 3.06486 3.11286 3.40981 3.62952 3.83719 4.06282 4.15777 4.28693 4.34781 4.41284 4.51494 4.69569 4.74407 4.82188 4.96301 4.98312 5.11396 5.11869 5.18790 5.23862 5.36271 5.42182 5.56483 5.61247 5.77670 5.81263 5.88387 6.17794 6.40815 6.83912 7.10919 7.36371 7.77777 8.87703 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.031063 B = 0.002381 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.178311 B =11758.453453 C =12293.979973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.025 3.975 3 N -0.233 5.233 4 N -0.631 5.631 5 C 0.306 3.694 6 H -0.004 1.004 7 C -0.135 4.135 8 C -0.545 4.545 9 H 0.063 0.937 10 C 0.017 3.983 11 N -0.915 5.915 12 Si 0.973 3.027 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.268 1.268 16 C -0.036 4.036 17 C -0.067 4.067 18 C -0.072 4.072 19 C -0.001 4.001 20 C 0.212 3.788 21 N -0.281 5.281 22 N -0.053 5.053 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.299 5.299 26 C -0.116 4.116 27 C 0.087 3.913 28 F -0.139 7.139 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.377 0.623 33 H 0.014 0.986 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -25.907 1.181 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 N -0.045 5.045 4 N -0.369 5.369 5 C 0.203 3.797 6 H 0.014 0.986 7 C -0.194 4.194 8 C -0.585 4.585 9 H 0.081 0.919 10 C -0.184 4.184 11 N -0.554 5.554 12 Si 0.797 3.203 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.193 1.193 16 C -0.040 4.040 17 C -0.087 4.087 18 C -0.092 4.092 19 C -0.005 4.005 20 C -0.067 4.067 21 N -0.154 5.154 22 N -0.048 5.048 23 N -0.051 5.051 24 H 0.354 0.646 25 N -0.151 5.151 26 C -0.137 4.137 27 C 0.065 3.935 28 F -0.118 7.118 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.231 -25.747 1.203 25.804 hybrid contribution -0.240 1.420 -0.325 1.477 sum 0.990 -24.326 0.879 24.362 Atomic orbital electron populations 1.21095 0.89813 1.04353 1.03783 1.22949 0.95333 0.90182 1.07839 1.74379 1.28958 0.93616 1.07536 1.48586 1.06083 1.00106 1.82163 1.18118 0.91138 0.77986 0.92504 0.98560 1.22009 0.99064 1.00635 0.97718 1.21498 1.04747 0.95034 1.37178 0.91875 1.25750 0.96158 1.00388 0.96055 1.70028 1.18854 1.20836 1.45656 0.85341 0.78229 0.78113 0.78611 1.19566 1.20831 1.19254 1.18783 0.90417 0.92914 1.01920 1.21350 1.02077 0.88058 0.97241 1.21332 0.91342 0.99858 0.96707 1.17047 0.92825 0.85753 1.04914 1.23565 0.86638 0.94210 1.02309 1.76068 1.22578 0.98195 1.18538 1.78849 0.88859 1.22215 1.14892 1.47780 1.12162 1.01195 1.43924 0.64631 1.74974 1.17669 1.00661 1.21819 1.20953 1.01404 0.89473 1.01825 1.17930 0.90034 0.81453 1.04034 1.91568 1.79915 1.46735 1.93546 0.89835 0.87014 0.92631 0.78401 0.96729 0.94884 0.91268 0.92422 0.80272 0.81361 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.03 71.24 0.64 -2.46 16 2 C 0.02 0.81 7.10 45.27 0.32 1.13 16 3 N -0.23 -9.99 9.52 -42.88 -0.41 -10.40 16 4 N -0.63 -29.00 5.95 -172.52 -1.03 -30.03 16 5 C 0.31 16.54 3.23 44.25 0.14 16.69 16 6 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 7 C -0.13 -7.02 9.29 71.98 0.67 -6.35 16 8 C -0.55 -30.06 8.74 25.60 0.22 -29.84 16 9 H 0.06 3.34 7.79 -2.91 -0.02 3.32 16 10 C 0.02 0.91 5.30 84.65 0.45 1.36 16 11 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 12 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 16 C -0.04 -1.00 5.88 -20.08 -0.12 -1.11 16 17 C -0.07 -1.19 9.35 22.50 0.21 -0.98 16 18 C -0.07 -1.21 9.68 22.43 0.22 -0.99 16 19 C 0.00 -0.02 5.88 -19.99 -0.12 -0.13 16 20 C 0.21 4.27 7.93 137.32 1.09 5.36 16 21 N -0.28 -5.56 12.22 -52.21 -0.64 -6.20 16 22 N -0.05 -0.86 13.47 37.02 0.50 -0.36 16 23 N -0.20 -2.29 7.90 37.02 0.29 -2.00 16 24 H 0.49 0.72 8.96 -347.53 -3.12 -2.40 16 25 N -0.30 -5.27 12.07 -52.16 -0.63 -5.90 16 26 C -0.12 -2.84 9.66 22.48 0.22 -2.63 16 27 C 0.09 2.67 7.27 22.62 0.16 2.84 16 28 F -0.14 -5.47 15.34 44.97 0.69 -4.79 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 1.71 6.46 -2.39 -0.02 1.69 16 31 H 0.05 1.46 6.35 -2.39 -0.02 1.45 16 32 H 0.38 15.60 6.36 -213.32 -1.36 14.25 16 33 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 36 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.18 1.86 6.34 -2.91 -0.02 1.84 16 38 H 0.17 1.99 7.87 -2.91 -0.02 1.97 16 39 H 0.15 3.39 7.87 -2.91 -0.02 3.37 16 Total: -1.00 -72.52 341.91 1.83 -70.70 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -3.33 Total: 13.77 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.11 Total: -17.11 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -1.67 Total: -107.47 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.69 Total: -4.79 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.52 1.83 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.321 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds