Wall clock time and date at job start Tue Mar 31 2020 12:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29793 * 120.00322 * 2 1 4 4 N 1.40105 * 119.99656 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72028 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.47362 * 119.99456 * 180.02562 * 2 1 3 17 17 C 1.39783 * 120.05587 * 359.97438 * 16 2 1 18 18 C 1.37641 * 119.99134 * 179.97438 * 17 16 2 19 19 C 1.39496 * 120.08868 * 359.97438 * 18 17 16 20 20 C 1.48356 * 119.95102 * 179.97438 * 19 18 17 21 21 N 1.34089 * 126.67918 * 359.68693 * 20 19 18 22 22 N 1.28987 * 107.26178 * 179.83495 * 21 20 19 23 23 N 1.28724 * 108.95764 * 0.43946 * 22 21 20 24 24 H 0.97001 * 125.33953 * 179.74833 * 23 22 21 25 25 N 1.28877 * 109.33137 * 359.71936 * 23 22 21 26 26 C 1.39422 * 120.10401 * 0.02562 * 19 18 17 27 27 C 1.37920 * 120.00663 * 359.74095 * 26 19 18 28 28 F 1.35101 * 120.04515 * 180.27666 * 27 26 19 29 29 H 1.08997 * 109.47619 * 89.99364 * 1 2 3 30 30 H 1.09002 * 109.47077 * 209.99722 * 1 2 3 31 31 H 1.09003 * 109.46729 * 329.99247 * 1 2 3 32 32 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 34 34 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 36 36 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 37 37 H 1.08001 * 120.00343 * 359.95796 * 17 16 2 38 38 H 1.08000 * 119.96103 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.00172 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1240 0.0000 4 7 1.4556 2.3373 0.0005 5 6 2.1881 3.6060 0.0067 6 1 3.1407 3.4731 0.5196 7 6 2.4427 4.0551 -1.4336 8 6 1.3740 4.6527 0.7227 9 1 0.4077 4.3982 1.1326 10 6 1.8631 5.9350 0.8556 11 7 1.1523 6.8485 1.4800 12 14 3.5347 6.3750 0.1473 13 1 3.3709 6.8482 -1.2507 14 1 4.1512 7.4503 0.9650 15 1 4.4107 5.1760 0.1646 16 6 2.2437 -1.2763 -0.0006 17 6 1.5459 -2.4874 -0.0006 18 6 2.2353 -3.6787 -0.0016 19 6 3.6303 -3.6794 -0.0033 20 6 4.3703 -4.9653 -0.0038 21 7 3.8378 -6.1959 0.0029 22 7 4.8162 -7.0363 -0.0039 23 7 5.9267 -6.3853 -0.0052 24 1 6.8109 -6.7842 -0.0065 25 7 5.6798 -5.1205 -0.0052 26 6 4.3302 -2.4736 -0.0033 27 6 3.6435 -1.2775 -0.0071 28 9 4.3210 -0.1087 -0.0127 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 0.4856 2.3374 0.0013 33 1 1.4901 4.1880 -1.9464 34 1 2.9881 4.9987 -1.4289 35 1 3.0316 3.2979 -1.9514 36 1 1.4963 7.7507 1.5731 37 1 0.4659 -2.4884 0.0005 38 1 1.6957 -4.6142 -0.0012 39 1 5.4102 -2.4761 -0.0049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823953628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:17 Heat of formation + Delta-G solvation = 159.010033 kcal Electronic energy + Delta-G solvation = -25115.530903 eV Core-core repulsion = 21205.372567 eV Total energy + Delta-G solvation = -3910.158336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.53153 -44.74051 -39.26812 -37.18659 -34.96379 -34.50070 -33.64184 -32.08929 -31.00926 -30.48556 -28.77587 -27.34088 -25.26927 -24.97607 -24.74478 -22.40491 -22.23751 -20.61762 -19.56434 -19.37361 -17.73194 -17.43156 -17.05190 -16.37194 -16.01339 -15.44140 -15.38151 -15.09386 -14.42687 -14.28174 -14.18071 -13.82844 -13.50027 -13.09897 -12.98028 -12.75507 -12.72442 -12.28244 -12.23277 -12.11509 -11.70748 -11.66070 -11.61574 -11.44764 -11.26699 -11.20609 -10.80849 -10.61616 -10.21587 -9.70658 -9.55971 -9.23019 -9.08359 -8.81556 -8.66396 -7.00044 -6.22667 -4.25296 0.29835 0.85676 1.13886 1.90173 1.93164 2.80985 3.21204 3.32868 3.34602 3.35319 3.53326 3.69909 3.85967 4.28720 4.32887 4.67111 4.73548 4.91190 5.00531 5.11658 5.15462 5.18853 5.39058 5.45832 5.66752 5.71033 5.88995 5.98891 6.04281 6.09873 6.13826 6.28058 6.28280 6.41491 6.54789 6.64580 6.77200 6.92979 7.29879 7.48108 7.84071 7.89477 8.36153 8.76586 9.05403 9.37309 10.89659 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002555 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.374356 B =10958.258952 C =11706.349920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.000 4.000 3 N -0.174 5.174 4 N -0.606 5.606 5 C 0.268 3.732 6 H 0.044 0.956 7 C -0.164 4.164 8 C -0.534 4.534 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.294 1.294 15 H -0.262 1.262 16 C -0.006 4.006 17 C -0.093 4.093 18 C -0.082 4.082 19 C -0.010 4.010 20 C 0.227 3.773 21 N -0.267 5.267 22 N -0.051 5.051 23 N -0.228 5.228 24 H 0.475 0.525 25 N -0.294 5.294 26 C -0.114 4.114 27 C 0.112 3.888 28 F -0.112 7.112 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.378 0.622 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.268 0.732 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 -25.206 -4.236 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 N 0.011 4.989 4 N -0.343 5.343 5 C 0.164 3.836 6 H 0.062 0.938 7 C -0.223 4.223 8 C -0.573 4.573 9 H 0.096 0.904 10 C -0.125 4.125 11 N -0.529 5.529 12 Si 0.717 3.283 13 H -0.203 1.203 14 H -0.221 1.221 15 H -0.187 1.187 16 C -0.010 4.010 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.014 4.014 20 C -0.053 4.053 21 N -0.140 5.140 22 N -0.046 5.046 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.145 5.145 26 C -0.136 4.136 27 C 0.090 3.910 28 F -0.090 7.090 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.217 0.783 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.813 -24.977 -4.165 26.223 hybrid contribution 0.388 0.657 -0.352 0.840 sum 7.201 -24.320 -4.517 25.763 Atomic orbital electron populations 1.20980 0.92342 1.03236 1.02506 1.22140 0.93261 0.90344 1.12864 1.74307 1.27934 0.93078 1.03563 1.48755 1.06545 0.99899 1.79073 1.18934 0.93694 0.78756 0.92179 0.93824 1.22570 1.00521 0.99263 0.99915 1.21034 1.05933 0.93523 1.36808 0.90356 1.24818 0.97352 0.95855 0.94503 1.69862 1.37863 1.03474 1.41689 0.86843 0.84572 0.78428 0.78415 1.20288 1.22132 1.18716 1.18578 0.90665 0.92494 0.99307 1.21012 1.00592 0.89655 1.00065 1.21020 0.91917 0.99013 0.98298 1.16885 0.92022 0.86064 1.06472 1.23612 0.86246 0.94243 1.01181 1.76095 1.21827 0.98265 1.17855 1.78901 0.88520 1.22429 1.14746 1.47727 1.11512 1.02066 1.46108 0.67039 1.74995 1.17961 0.99518 1.22039 1.20963 1.01108 0.89829 1.01651 1.17506 0.89199 0.81660 1.02603 1.91625 1.79249 1.44999 1.93096 0.91181 0.90847 0.91396 0.78277 0.92885 0.93452 0.94635 0.92230 0.83781 0.84043 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.03 36.01 0.33 -1.31 16 2 C 0.00 -0.01 7.10 -79.74 -0.57 -0.57 16 3 N -0.17 -3.38 9.52 35.09 0.33 -3.05 16 4 N -0.61 -12.69 5.95 -5.88 -0.04 -12.72 16 5 C 0.27 6.41 2.82 -69.08 -0.20 6.21 16 6 H 0.04 1.12 7.20 -51.93 -0.37 0.74 16 7 C -0.16 -3.62 9.00 37.16 0.33 -3.29 16 8 C -0.53 -14.54 9.32 -34.44 -0.32 -14.86 16 9 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 10 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 11 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 12 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16 13 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 16 C -0.01 -0.08 5.88 -104.95 -0.62 -0.70 16 17 C -0.09 -0.94 9.35 -39.22 -0.37 -1.31 16 18 C -0.08 -0.79 9.68 -39.33 -0.38 -1.18 16 19 C -0.01 -0.11 5.88 -104.82 -0.62 -0.72 16 20 C 0.23 2.45 7.93 -156.27 -1.24 1.21 16 21 N -0.27 -2.92 12.22 32.15 0.39 -2.53 16 22 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 23 N -0.23 -1.52 7.90 60.35 0.48 -1.04 16 24 H 0.48 0.83 8.96 -340.36 -3.05 -2.22 16 25 N -0.29 -2.79 12.07 32.16 0.39 -2.40 16 26 C -0.11 -1.36 9.66 -39.26 -0.38 -1.74 16 27 C 0.11 1.61 7.27 -39.05 -0.28 1.32 16 28 F -0.11 -1.93 15.34 2.25 0.03 -1.89 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 31 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 32 H 0.38 7.36 6.36 -182.59 -1.16 6.20 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 1.09 6.34 -52.49 -0.33 0.76 16 38 H 0.14 1.12 7.87 -52.49 -0.41 0.71 16 39 H 0.14 1.55 7.87 -52.49 -0.41 1.14 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -32.70 335.09 -7.77 -40.47 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.45 Total: 0.92 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -4.40 Total: -14.84 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 3.14 Total: -47.03 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.70 -7.77 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.476 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds