Wall clock time and date at job start Tue Mar 31 2020 12:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29793 * 120.00322 * 2 1 4 4 N 1.40105 * 119.99656 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72028 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.47362 * 119.99456 * 180.02562 * 2 1 3 17 17 C 1.39783 * 120.05587 * 359.97438 * 16 2 1 18 18 C 1.37641 * 119.99134 * 179.97438 * 17 16 2 19 19 C 1.39496 * 120.08868 * 359.97438 * 18 17 16 20 20 C 1.48356 * 119.95102 * 179.97438 * 19 18 17 21 21 N 1.34089 * 126.67918 * 359.68693 * 20 19 18 22 22 N 1.28987 * 107.26178 * 179.83495 * 21 20 19 23 23 N 1.28724 * 108.95764 * 0.43946 * 22 21 20 24 24 H 0.97001 * 125.33953 * 179.74833 * 23 22 21 25 25 N 1.28877 * 109.33137 * 359.71936 * 23 22 21 26 26 C 1.39422 * 120.10401 * 0.02562 * 19 18 17 27 27 C 1.37920 * 120.00663 * 359.74095 * 26 19 18 28 28 F 1.35101 * 120.04515 * 180.27666 * 27 26 19 29 29 H 1.08997 * 109.47619 * 89.99364 * 1 2 3 30 30 H 1.09002 * 109.47077 * 209.99722 * 1 2 3 31 31 H 1.09003 * 109.46729 * 329.99247 * 1 2 3 32 32 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 34 34 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 35 35 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 36 36 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 37 37 H 1.08001 * 120.00343 * 359.95796 * 17 16 2 38 38 H 1.08000 * 119.96103 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.00172 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1561 1.1240 0.0000 4 7 1.4556 2.3373 0.0005 5 6 2.1881 3.6060 0.0067 6 1 3.1407 3.4731 0.5196 7 6 2.4427 4.0551 -1.4336 8 6 1.3740 4.6527 0.7227 9 1 0.4077 4.3982 1.1326 10 6 1.8631 5.9350 0.8556 11 7 1.1523 6.8485 1.4800 12 14 3.5347 6.3750 0.1473 13 1 3.3709 6.8482 -1.2507 14 1 4.1512 7.4503 0.9650 15 1 4.4107 5.1760 0.1646 16 6 2.2437 -1.2763 -0.0006 17 6 1.5459 -2.4874 -0.0006 18 6 2.2353 -3.6787 -0.0016 19 6 3.6303 -3.6794 -0.0033 20 6 4.3703 -4.9653 -0.0038 21 7 3.8378 -6.1959 0.0029 22 7 4.8162 -7.0363 -0.0039 23 7 5.9267 -6.3853 -0.0052 24 1 6.8109 -6.7842 -0.0065 25 7 5.6798 -5.1205 -0.0052 26 6 4.3302 -2.4736 -0.0033 27 6 3.6435 -1.2775 -0.0071 28 9 4.3210 -0.1087 -0.0127 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 0.4856 2.3374 0.0013 33 1 1.4901 4.1880 -1.9464 34 1 2.9881 4.9987 -1.4289 35 1 3.0316 3.2979 -1.9514 36 1 1.4963 7.7507 1.5731 37 1 0.4659 -2.4884 0.0005 38 1 1.6957 -4.6142 -0.0012 39 1 5.4102 -2.4761 -0.0049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823953628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:16 Heat of formation + Delta-G solvation = 135.739535 kcal Electronic energy + Delta-G solvation = -25116.539988 eV Core-core repulsion = 21205.372567 eV Total energy + Delta-G solvation = -3911.167420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.71406 -45.46591 -40.23598 -38.53163 -36.44735 -35.35913 -34.66806 -33.80559 -32.15649 -31.56043 -29.90718 -28.66021 -27.16079 -25.95317 -25.60005 -23.32377 -23.22592 -22.26141 -20.70706 -20.25397 -19.14161 -18.35569 -18.14632 -17.68787 -17.40759 -16.76395 -16.53692 -16.36334 -15.80672 -15.25035 -15.18650 -15.06487 -14.91780 -14.72412 -14.16381 -14.06099 -13.86415 -13.64735 -13.52745 -13.29057 -13.05238 -12.75212 -12.61230 -12.49188 -12.42224 -12.33239 -12.11770 -12.05630 -11.76278 -11.53031 -11.29558 -10.83621 -10.80985 -10.05091 -9.77076 -8.43816 -8.37135 -6.44362 -0.61959 0.12933 0.22657 0.99116 1.28925 1.36032 1.41193 1.46154 1.72627 2.11173 2.26814 2.55956 2.73949 2.97922 3.05858 3.38996 3.59667 3.82121 4.04885 4.14767 4.26414 4.32382 4.40724 4.43899 4.49335 4.59920 4.71338 4.76139 4.78998 4.94405 5.01133 5.10668 5.18039 5.23544 5.34371 5.37043 5.49590 5.60750 5.69535 5.80170 6.07465 6.46008 6.62190 7.10502 7.21981 7.68344 8.77851 Molecular weight = 318.13amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002555 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.374356 B =10958.258952 C =11706.349920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 N -0.231 5.231 4 N -0.629 5.629 5 C 0.279 3.721 6 H 0.022 0.978 7 C -0.156 4.156 8 C -0.534 4.534 9 H 0.045 0.955 10 C 0.026 3.974 11 N -0.937 5.937 12 Si 0.946 3.054 13 H -0.259 1.259 14 H -0.292 1.292 15 H -0.256 1.256 16 C -0.038 4.038 17 C -0.066 4.066 18 C -0.074 4.074 19 C 0.001 3.999 20 C 0.212 3.788 21 N -0.282 5.282 22 N -0.053 5.053 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.298 5.298 26 C -0.115 4.115 27 C 0.091 3.909 28 F -0.137 7.137 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.379 0.621 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.271 0.729 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -28.711 -5.273 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 N -0.043 5.043 4 N -0.367 5.367 5 C 0.174 3.826 6 H 0.040 0.960 7 C -0.214 4.214 8 C -0.573 4.573 9 H 0.063 0.937 10 C -0.174 4.174 11 N -0.576 5.576 12 Si 0.773 3.227 13 H -0.185 1.185 14 H -0.220 1.220 15 H -0.180 1.180 16 C -0.042 4.042 17 C -0.086 4.086 18 C -0.094 4.094 19 C -0.004 4.004 20 C -0.068 4.068 21 N -0.155 5.155 22 N -0.048 5.048 23 N -0.051 5.051 24 H 0.354 0.646 25 N -0.150 5.150 26 C -0.136 4.136 27 C 0.069 3.931 28 F -0.115 7.115 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.219 0.781 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.196 0.804 38 H 0.185 0.815 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.268 -28.523 -5.212 29.893 hybrid contribution 0.266 1.256 0.022 1.284 sum 7.534 -27.267 -5.190 28.761 Atomic orbital electron populations 1.21123 0.89952 1.04268 1.04006 1.22934 0.95252 0.90191 1.06934 1.74345 1.28472 0.93307 1.08141 1.48236 1.06097 0.99800 1.82542 1.18495 0.92143 0.79561 0.92447 0.96049 1.22440 1.00884 0.99251 0.98847 1.21275 1.04942 0.94675 1.36431 0.93713 1.25628 1.01025 0.95812 0.94920 1.69989 1.39929 1.04064 1.43625 0.85892 0.80143 0.78244 0.78435 1.18474 1.21981 1.18002 1.18741 0.90466 0.92737 1.02246 1.21350 1.02085 0.88129 0.97064 1.21329 0.91395 0.99857 0.96770 1.17059 0.92788 0.85812 1.04736 1.23580 0.86649 0.94222 1.02319 1.76074 1.22603 0.98247 1.18536 1.78858 0.88866 1.22222 1.14889 1.47790 1.12160 1.01213 1.43913 0.64632 1.74969 1.17637 1.00638 1.21801 1.20959 1.01455 0.89430 1.01792 1.17875 0.89876 0.81480 1.03824 1.91560 1.79857 1.46588 1.93523 0.89299 0.87139 0.92965 0.78149 0.92487 0.93920 0.93249 0.92021 0.80372 0.81485 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.03 71.24 0.64 -2.41 16 2 C 0.04 1.07 7.10 45.27 0.32 1.39 16 3 N -0.23 -9.17 9.52 -42.89 -0.41 -9.58 16 4 N -0.63 -27.26 5.95 -172.52 -1.03 -28.29 16 5 C 0.28 13.74 2.82 44.25 0.12 13.86 16 6 H 0.02 1.14 7.20 -2.39 -0.02 1.13 16 7 C -0.16 -6.88 9.00 71.98 0.65 -6.23 16 8 C -0.53 -30.35 9.32 25.60 0.24 -30.11 16 9 H 0.04 2.76 8.03 -2.91 -0.02 2.74 16 10 C 0.03 1.47 5.45 84.66 0.46 1.93 16 11 N -0.94 -57.37 13.96 21.45 0.30 -57.08 16 12 Si 0.95 44.94 24.37 68.60 1.67 46.61 16 13 H -0.26 -11.53 6.87 99.48 0.68 -10.84 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.26 -11.78 6.53 99.48 0.65 -11.13 16 16 C -0.04 -0.96 5.88 -20.08 -0.12 -1.08 16 17 C -0.07 -1.08 9.35 22.50 0.21 -0.87 16 18 C -0.07 -1.13 9.68 22.43 0.22 -0.92 16 19 C 0.00 0.01 5.88 -19.99 -0.12 -0.11 16 20 C 0.21 4.01 7.93 137.32 1.09 5.10 16 21 N -0.28 -5.34 12.22 -52.21 -0.64 -5.98 16 22 N -0.05 -0.82 13.47 37.02 0.50 -0.33 16 23 N -0.20 -2.10 7.90 37.02 0.29 -1.81 16 24 H 0.49 0.29 8.96 -347.53 -3.12 -2.83 16 25 N -0.30 -4.90 12.07 -52.16 -0.63 -5.53 16 26 C -0.12 -2.60 9.66 22.48 0.22 -2.38 16 27 C 0.09 2.56 7.27 22.62 0.16 2.72 16 28 F -0.14 -4.87 15.34 44.97 0.69 -4.18 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.65 6.46 -2.39 -0.02 1.64 16 31 H 0.05 1.40 6.35 -2.39 -0.02 1.38 16 32 H 0.38 15.40 6.36 -213.32 -1.36 14.04 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.18 1.67 6.34 -2.91 -0.02 1.65 16 38 H 0.17 1.83 7.87 -2.91 -0.02 1.81 16 39 H 0.15 3.09 7.87 -2.91 -0.02 3.07 16 Total: -1.00 -74.33 335.09 1.44 -72.88 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -3.40 Total: 12.37 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.10 Total: -19.10 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -1.61 Total: -108.59 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.69 Total: -4.18 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.61 kcal Total: -74.33 1.44 -72.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823953628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.624 kcal (2) G-P(sol) polarization free energy of solvation -74.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds