Wall clock time and date at job start Tue Mar 31 2020 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47348 * 2 1 4 4 C 1.46507 * 119.99682 * 269.99647 * 3 2 1 5 5 C 1.52991 * 109.47248 * 270.00108 * 4 3 2 6 6 C 1.34769 * 120.00151 * 90.00258 * 3 2 1 7 7 O 1.21281 * 120.00195 * 359.97438 * 6 3 2 8 8 C 1.50704 * 119.99851 * 179.97438 * 6 3 2 9 9 N 1.46499 * 109.47081 * 179.97438 * 8 6 3 10 10 S 1.65598 * 119.99908 * 165.27477 * 9 8 6 11 11 O 1.42104 * 104.27853 * 180.79648 * 10 9 8 12 12 O 1.42097 * 104.27977 * 308.65351 * 10 9 8 13 13 C 1.81401 * 104.44942 * 64.72687 * 10 9 8 14 14 C 1.53004 * 109.47124 * 173.80914 * 13 10 9 15 15 C 1.50693 * 115.55085 * 65.19431 * 14 13 10 16 16 H 1.08004 * 119.99827 * 264.78193 * 15 14 13 17 17 C 1.37874 * 120.00327 * 84.78416 * 15 14 13 18 18 N 1.31516 * 119.99825 * 352.23443 * 17 15 14 19 19 Si 1.86803 * 120.00251 * 172.23174 * 17 15 14 20 20 H 1.48498 * 109.46898 * 90.00085 * 19 17 15 21 21 H 1.48499 * 109.46936 * 210.00057 * 19 17 15 22 22 H 1.48498 * 109.46925 * 330.00298 * 19 17 15 23 23 C 1.53000 * 117.49599 * 279.52028 * 14 13 10 24 24 C 1.53005 * 117.49779 * 210.86752 * 14 13 10 25 25 H 1.09004 * 109.46632 * 300.00522 * 1 2 3 26 26 H 1.08995 * 109.47155 * 59.99660 * 1 2 3 27 27 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46992 * 239.99696 * 2 1 3 29 29 H 1.09007 * 109.47174 * 119.99874 * 2 1 3 30 30 H 1.09000 * 109.46895 * 30.00575 * 4 3 2 31 31 H 1.09004 * 109.46880 * 150.00056 * 4 3 2 32 32 H 1.09000 * 109.47403 * 60.00621 * 5 4 3 33 33 H 1.09002 * 109.46929 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47554 * 300.00064 * 5 4 3 35 35 H 1.08998 * 109.47337 * 59.99988 * 8 6 3 36 36 H 1.09001 * 109.47138 * 299.99410 * 8 6 3 37 37 H 0.97001 * 120.00334 * 344.99856 * 9 8 6 38 38 H 1.08992 * 109.47101 * 293.80720 * 13 10 9 39 39 H 1.09002 * 109.47316 * 53.80841 * 13 10 9 40 40 H 0.97003 * 120.00122 * 185.03242 * 18 17 15 41 41 H 1.08999 * 117.50399 * 0.02562 * 23 14 13 42 42 H 1.09006 * 117.49780 * 145.01817 * 23 14 13 43 43 H 1.09000 * 117.49458 * 214.97918 * 24 14 13 44 44 H 1.09000 * 117.49939 * 359.97079 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7075 1.8312 -1.7104 6 6 2.2431 2.0165 1.1671 7 8 2.0405 1.4450 2.2175 8 6 2.7460 3.4371 1.1670 9 7 2.9082 3.8978 2.5482 10 16 3.7802 5.2691 2.8667 11 8 3.7381 5.3905 4.2819 12 8 5.0107 5.0682 2.1850 13 6 2.8295 6.6017 2.0849 14 6 3.4557 7.9516 2.4410 15 6 4.8428 8.1873 1.9012 16 1 5.7049 7.9760 2.5166 17 6 5.0114 8.6726 0.6218 18 7 3.9754 8.7857 -0.1805 19 14 6.7113 9.1697 0.0278 20 1 7.3799 7.9991 -0.5949 21 1 6.5867 10.2592 -0.9736 22 1 7.5184 9.6459 1.1797 23 6 3.1196 8.5471 3.8097 24 6 2.5217 9.1593 2.5406 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1385 32 1 3.8745 0.7620 -1.8408 33 1 3.8891 2.3446 -2.6547 34 1 4.3884 2.2153 -0.9509 35 1 2.0284 4.0766 0.6530 36 1 3.7064 3.4825 0.6534 37 1 2.5015 3.4018 3.2759 38 1 2.8412 6.4700 1.0031 39 1 1.8006 6.5726 2.4435 40 1 4.1035 9.0574 -1.1028 41 1 2.4528 7.9771 4.4567 42 1 3.9018 9.1097 4.3196 43 1 2.9107 10.1244 2.2160 44 1 1.4612 8.9924 2.3520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830200276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:10 Heat of formation + Delta-G solvation = -86.576350 kcal Electronic energy + Delta-G solvation = -25901.433430 eV Core-core repulsion = 22174.944424 eV Total energy + Delta-G solvation = -3726.489007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.21051 -36.77154 -36.50598 -36.26126 -35.12060 -34.56637 -32.33340 -32.06501 -29.85484 -28.19252 -27.02455 -25.47398 -23.82520 -23.04671 -21.22045 -19.84261 -19.29526 -18.73630 -17.54556 -16.99403 -16.49388 -16.31003 -15.93753 -15.21418 -15.05724 -14.70602 -14.38173 -14.16741 -14.04035 -13.90786 -13.69176 -13.27619 -13.06236 -12.84687 -12.60143 -12.28958 -11.96913 -11.90998 -11.84282 -11.45468 -11.37702 -11.28629 -11.24474 -11.16022 -11.03177 -10.95940 -10.59676 -10.46488 -10.14062 -9.99991 -9.76328 -9.29346 -8.97172 -8.95932 -8.58395 -8.11279 -6.16670 -4.26739 1.02787 2.45260 2.71378 3.28914 3.34286 3.40309 3.45132 4.25193 4.35240 4.54187 4.63927 4.82835 4.85812 4.95637 5.07097 5.10929 5.11756 5.15912 5.19702 5.21967 5.34049 5.37322 5.49599 5.59290 5.61999 5.68786 5.90081 5.92793 5.98158 6.02558 6.24111 6.33297 6.35797 6.58818 6.72318 6.96845 7.06940 7.21183 7.34173 7.38258 7.78247 7.97182 8.18638 8.79009 9.44364 10.91002 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.004212 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.498439 B = 6646.017229 C = 7537.081396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.098 3.902 5 C -0.177 4.177 6 C 0.517 3.483 7 O -0.531 6.531 8 C 0.098 3.902 9 N -1.123 6.123 10 S 2.608 3.392 11 O -0.968 6.968 12 O -0.949 6.949 13 C -0.555 4.555 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.083 3.917 18 N -0.876 5.876 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.208 4.208 24 C -0.140 4.140 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.419 0.581 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -13.734 -5.494 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.349 5.349 4 C -0.025 4.025 5 C -0.235 4.235 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.032 4.032 9 N -0.882 5.882 10 S 2.705 3.295 11 O -0.959 6.959 12 O -0.939 6.939 13 C -0.688 4.688 14 C 0.040 3.960 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.122 4.122 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.245 4.245 24 C -0.180 4.180 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.255 0.745 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.804 -13.852 -4.767 16.152 hybrid contribution -0.019 0.253 -0.786 0.826 sum -6.823 -13.599 -5.553 16.196 Atomic orbital electron populations 1.22130 0.95836 1.02172 1.02444 1.21418 0.94388 0.82172 1.03184 1.48033 1.66266 1.14477 1.06085 1.21713 0.97394 0.98236 0.85149 1.22259 0.96402 1.02384 1.02498 1.20619 0.76992 0.88538 0.83456 1.90670 1.51642 1.67427 1.30995 1.21115 1.03494 0.93084 0.85530 1.55874 1.74526 1.45399 1.12404 1.05183 0.75297 0.74237 0.74781 1.93519 1.87017 1.86033 1.29286 1.93530 1.40543 1.83881 1.75962 1.29999 1.10535 1.14704 1.13565 1.18279 0.95606 0.87494 0.94633 1.20535 0.89516 1.45341 0.99808 0.91323 1.24939 0.96922 0.93868 0.96484 1.69979 1.29590 1.46012 1.05530 0.86588 0.84352 0.78492 0.78804 1.20045 1.21089 1.19423 1.23206 1.03801 1.06185 0.91354 1.22553 0.96471 0.99096 0.99857 0.92129 0.92534 0.91655 0.90522 0.89835 0.89906 0.89547 0.92326 0.90872 0.91663 0.88799 0.87147 0.74549 0.84855 0.88074 0.92764 0.90607 0.89484 0.89567 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.11 0.96 6.13 -4.04 -0.02 0.93 16 3 N -0.61 -6.22 2.47 -173.69 -0.43 -6.65 16 4 C 0.10 0.75 5.93 -4.04 -0.02 0.73 16 5 C -0.18 -1.40 10.24 37.15 0.38 -1.02 16 6 C 0.52 6.95 7.74 -10.99 -0.09 6.86 16 7 O -0.53 -8.73 15.31 5.56 0.09 -8.64 16 8 C 0.10 1.34 5.16 -5.19 -0.03 1.31 16 9 N -1.12 -18.27 5.82 -11.65 -0.07 -18.34 16 10 S 2.61 53.08 5.19 -107.50 -0.56 52.52 16 11 O -0.97 -21.84 18.08 -57.54 -1.04 -22.88 16 12 O -0.95 -22.29 17.18 -57.54 -0.99 -23.28 16 13 C -0.55 -11.29 5.92 37.16 0.22 -11.07 16 14 C 0.04 1.01 1.32 -155.66 -0.21 0.81 16 15 C -0.51 -13.81 8.18 -34.44 -0.28 -14.09 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C 0.08 2.19 5.38 -17.82 -0.10 2.10 16 18 N -0.88 -23.22 12.98 55.43 0.72 -22.50 16 19 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.21 -4.55 9.96 -26.70 -0.27 -4.81 16 24 C -0.14 -3.15 9.49 -26.69 -0.25 -3.40 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 29 H 0.08 0.85 7.42 -51.93 -0.39 0.46 16 30 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.09 0.64 6.44 -51.93 -0.33 0.30 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.63 7.22 -51.93 -0.37 0.26 16 35 H 0.09 1.02 7.40 -51.93 -0.38 0.64 16 36 H 0.11 1.49 6.75 -51.93 -0.35 1.14 16 37 H 0.42 6.64 7.67 -34.47 -0.26 6.38 16 38 H 0.13 2.71 8.14 -51.93 -0.42 2.28 16 39 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 40 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -33.87 378.28 -9.01 -42.88 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.13 Total: 7.91 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.28 Total: -22.58 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.22 Total: -47.49 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -1.94 Total: -54.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.56 Total: 52.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.87 -9.01 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830200276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.698 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds