Wall clock time and date at job start Tue Mar 31 2020 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47348 * 2 1 4 4 C 1.46507 * 119.99682 * 269.99647 * 3 2 1 5 5 C 1.52991 * 109.47248 * 270.00108 * 4 3 2 6 6 C 1.34769 * 120.00151 * 90.00258 * 3 2 1 7 7 O 1.21281 * 120.00195 * 359.97438 * 6 3 2 8 8 C 1.50704 * 119.99851 * 179.97438 * 6 3 2 9 9 N 1.46499 * 109.47081 * 179.97438 * 8 6 3 10 10 S 1.65598 * 119.99908 * 165.27477 * 9 8 6 11 11 O 1.42104 * 104.27853 * 180.79648 * 10 9 8 12 12 O 1.42097 * 104.27977 * 308.65351 * 10 9 8 13 13 C 1.81401 * 104.44942 * 64.72687 * 10 9 8 14 14 C 1.53004 * 109.47124 * 173.80914 * 13 10 9 15 15 C 1.50693 * 115.55085 * 65.19431 * 14 13 10 16 16 H 1.08004 * 119.99827 * 264.78193 * 15 14 13 17 17 C 1.37874 * 120.00327 * 84.78416 * 15 14 13 18 18 N 1.31516 * 119.99825 * 352.23443 * 17 15 14 19 19 Si 1.86803 * 120.00251 * 172.23174 * 17 15 14 20 20 H 1.48498 * 109.46898 * 90.00085 * 19 17 15 21 21 H 1.48499 * 109.46936 * 210.00057 * 19 17 15 22 22 H 1.48498 * 109.46925 * 330.00298 * 19 17 15 23 23 C 1.53000 * 117.49599 * 279.52028 * 14 13 10 24 24 C 1.53005 * 117.49779 * 210.86752 * 14 13 10 25 25 H 1.09004 * 109.46632 * 300.00522 * 1 2 3 26 26 H 1.08995 * 109.47155 * 59.99660 * 1 2 3 27 27 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46992 * 239.99696 * 2 1 3 29 29 H 1.09007 * 109.47174 * 119.99874 * 2 1 3 30 30 H 1.09000 * 109.46895 * 30.00575 * 4 3 2 31 31 H 1.09004 * 109.46880 * 150.00056 * 4 3 2 32 32 H 1.09000 * 109.47403 * 60.00621 * 5 4 3 33 33 H 1.09002 * 109.46929 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47554 * 300.00064 * 5 4 3 35 35 H 1.08998 * 109.47337 * 59.99988 * 8 6 3 36 36 H 1.09001 * 109.47138 * 299.99410 * 8 6 3 37 37 H 0.97001 * 120.00334 * 344.99856 * 9 8 6 38 38 H 1.08992 * 109.47101 * 293.80720 * 13 10 9 39 39 H 1.09002 * 109.47316 * 53.80841 * 13 10 9 40 40 H 0.97003 * 120.00122 * 185.03242 * 18 17 15 41 41 H 1.08999 * 117.50399 * 0.02562 * 23 14 13 42 42 H 1.09006 * 117.49780 * 145.01817 * 23 14 13 43 43 H 1.09000 * 117.49458 * 214.97918 * 24 14 13 44 44 H 1.09000 * 117.49939 * 359.97079 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7075 1.8312 -1.7104 6 6 2.2431 2.0165 1.1671 7 8 2.0405 1.4450 2.2175 8 6 2.7460 3.4371 1.1670 9 7 2.9082 3.8978 2.5482 10 16 3.7802 5.2691 2.8667 11 8 3.7381 5.3905 4.2819 12 8 5.0107 5.0682 2.1850 13 6 2.8295 6.6017 2.0849 14 6 3.4557 7.9516 2.4410 15 6 4.8428 8.1873 1.9012 16 1 5.7049 7.9760 2.5166 17 6 5.0114 8.6726 0.6218 18 7 3.9754 8.7857 -0.1805 19 14 6.7113 9.1697 0.0278 20 1 7.3799 7.9991 -0.5949 21 1 6.5867 10.2592 -0.9736 22 1 7.5184 9.6459 1.1797 23 6 3.1196 8.5471 3.8097 24 6 2.5217 9.1593 2.5406 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1385 32 1 3.8745 0.7620 -1.8408 33 1 3.8891 2.3446 -2.6547 34 1 4.3884 2.2153 -0.9509 35 1 2.0284 4.0766 0.6530 36 1 3.7064 3.4825 0.6534 37 1 2.5015 3.4018 3.2759 38 1 2.8412 6.4700 1.0031 39 1 1.8006 6.5726 2.4435 40 1 4.1035 9.0574 -1.1028 41 1 2.4528 7.9771 4.4567 42 1 3.9018 9.1097 4.3196 43 1 2.9107 10.1244 2.2160 44 1 1.4612 8.9924 2.3520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830200276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:10 Heat of formation + Delta-G solvation = -110.594311 kcal Electronic energy + Delta-G solvation = -25902.474927 eV Core-core repulsion = 22174.944424 eV Total energy + Delta-G solvation = -3727.530503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17332 -38.55176 -37.98637 -37.39260 -36.82694 -35.80998 -34.05312 -33.02568 -30.64141 -29.85804 -28.08221 -27.44983 -24.48272 -23.86443 -22.97004 -21.54965 -20.45270 -20.11868 -18.81348 -18.37497 -17.90808 -17.58188 -17.10160 -16.77135 -16.67826 -16.30761 -15.78467 -15.47901 -14.91806 -14.89572 -14.82803 -14.70277 -14.11594 -13.73183 -13.67349 -13.56642 -13.43191 -13.12174 -13.07152 -12.93292 -12.91966 -12.86521 -12.83042 -12.54090 -12.41612 -12.20774 -12.02338 -11.90396 -11.89470 -11.55553 -11.06607 -10.84898 -10.61596 -10.51314 -9.87695 -9.78070 -8.16350 -6.30448 -0.57541 1.41680 1.43734 1.44062 1.52619 1.77442 2.09955 2.42709 2.92570 3.10394 3.32289 3.39657 3.45134 3.92588 4.02028 4.15246 4.18078 4.22960 4.24482 4.30421 4.47444 4.48267 4.53787 4.58103 4.62136 4.63383 4.77779 4.85867 4.94929 5.00503 5.01549 5.05360 5.23355 5.30474 5.38960 5.47227 5.58716 5.61283 5.75127 5.96659 6.25564 6.27650 6.74935 7.00391 7.41608 8.90782 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.004212 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.498439 B = 6646.017229 C = 7537.081396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.091 3.909 5 C -0.177 4.177 6 C 0.514 3.486 7 O -0.570 6.570 8 C 0.086 3.914 9 N -1.113 6.113 10 S 2.623 3.377 11 O -0.995 6.995 12 O -0.988 6.988 13 C -0.547 4.547 14 C 0.011 3.989 15 C -0.536 4.536 16 H 0.046 0.954 17 C 0.049 3.951 18 N -0.888 5.888 19 Si 0.932 3.068 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.201 4.201 24 C -0.134 4.134 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.422 0.578 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.267 0.733 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -14.343 -7.176 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.338 5.338 4 C -0.031 4.031 5 C -0.235 4.235 6 C 0.301 3.699 7 O -0.450 6.450 8 C -0.043 4.043 9 N -0.875 5.875 10 S 2.721 3.279 11 O -0.985 6.985 12 O -0.978 6.978 13 C -0.681 4.681 14 C 0.009 3.991 15 C -0.573 4.573 16 H 0.065 0.935 17 C -0.155 4.155 18 N -0.524 5.524 19 Si 0.758 3.242 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.239 4.239 24 C -0.174 4.174 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.259 0.741 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.222 -14.466 -6.484 17.858 hybrid contribution 0.411 0.401 -0.308 0.651 sum -7.811 -14.065 -6.792 17.463 Atomic orbital electron populations 1.22075 0.94932 1.03086 1.01825 1.21601 0.95099 0.81258 1.03650 1.48134 1.64731 1.14962 1.05938 1.21983 0.97917 0.98600 0.84551 1.22254 0.96000 1.02923 1.02311 1.20588 0.76989 0.88365 0.83965 1.90652 1.53716 1.68103 1.32489 1.21438 1.04538 0.94248 0.84077 1.55416 1.73976 1.44141 1.13923 1.04467 0.74933 0.74704 0.73804 1.93472 1.87448 1.86720 1.30881 1.93479 1.43101 1.84705 1.76477 1.29854 1.12070 1.12533 1.13636 1.18417 0.95039 0.89513 0.96167 1.20673 0.90590 1.46000 1.00083 0.93538 1.25431 0.99475 0.93942 0.96627 1.69999 1.30421 1.46220 1.05748 0.85950 0.81461 0.78426 0.78404 1.20043 1.19803 1.19893 1.23257 1.03789 1.05730 0.91088 1.22519 0.97359 0.97640 0.99834 0.94629 0.91124 0.90062 0.87534 0.91882 0.86849 0.89081 0.91614 0.89591 0.94056 0.85643 0.87225 0.74111 0.84737 0.84542 0.92385 0.88465 0.90072 0.91425 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.24 71.98 0.74 -1.43 16 2 C 0.11 1.62 6.13 86.38 0.53 2.15 16 3 N -0.60 -11.17 2.47 -821.82 -2.03 -13.20 16 4 C 0.09 1.15 5.93 86.37 0.51 1.66 16 5 C -0.18 -2.45 10.24 71.98 0.74 -1.72 16 6 C 0.51 13.41 7.74 87.66 0.68 14.09 16 7 O -0.57 -18.80 15.31 -3.03 -0.05 -18.84 16 8 C 0.09 2.26 5.16 85.63 0.44 2.70 16 9 N -1.11 -35.53 5.82 -190.79 -1.11 -36.64 16 10 S 2.62 106.06 5.19 -56.49 -0.29 105.77 16 11 O -0.99 -44.79 18.08 -127.65 -2.31 -47.09 16 12 O -0.99 -47.09 17.18 -127.65 -2.19 -49.28 16 13 C -0.55 -21.42 5.92 71.98 0.43 -20.99 16 14 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 15 C -0.54 -28.95 8.18 25.60 0.21 -28.74 16 16 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 17 C 0.05 2.57 5.38 84.65 0.46 3.02 16 18 N -0.89 -46.33 12.98 21.45 0.28 -46.05 16 19 Si 0.93 42.58 29.55 68.60 2.03 44.61 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.20 -8.57 9.96 30.62 0.30 -8.26 16 24 C -0.13 -5.83 9.49 30.62 0.29 -5.54 16 25 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 29 H 0.06 1.25 7.42 -2.38 -0.02 1.23 16 30 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.09 1.09 6.44 -2.38 -0.02 1.07 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.77 7.22 -2.39 -0.02 0.76 16 35 H 0.13 2.45 7.40 -2.39 -0.02 2.43 16 36 H 0.11 2.91 6.75 -2.39 -0.02 2.89 16 37 H 0.42 13.26 7.67 -96.75 -0.74 12.52 16 38 H 0.13 5.24 8.14 -2.39 -0.02 5.22 16 39 H 0.14 4.29 8.09 -2.39 -0.02 4.27 16 40 H 0.27 13.16 8.32 -92.71 -0.77 12.39 16 41 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 43 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -73.16 378.28 -0.18 -73.34 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.25 Total: 30.00 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 5.25 Total: -42.61 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -2.86 Total: -95.89 kcal Atomic # 8 Polarization: -110.67 SS G_CDS: -4.55 Total: -115.22 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 106.06 SS G_CDS: -0.29 Total: 105.77 kcal Total: -73.16 -0.18 -73.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830200276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.255 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds