Wall clock time and date at job start Tue Mar 31 2020 12:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.75325 * 2 1 4 4 C 1.53460 * 109.84163 * 120.87245 * 2 1 3 5 5 N 1.45655 * 110.74066 * 166.50194 * 4 2 1 6 6 C 1.46500 * 117.70625 * 158.00063 * 5 4 2 7 7 C 1.33378 * 124.58606 * 337.98219 * 5 4 2 8 8 O 1.21284 * 118.48772 * 184.29130 * 7 5 4 9 9 C 1.50439 * 123.02514 * 4.31871 * 7 5 4 10 10 N 1.47053 * 108.88776 * 347.28753 * 9 7 5 11 11 S 1.65600 * 121.35399 * 222.71385 * 10 9 7 12 12 O 1.42102 * 104.27745 * 144.52791 * 11 10 9 13 13 O 1.42100 * 104.27462 * 16.66967 * 11 10 9 14 14 C 1.81402 * 104.45228 * 260.59861 * 11 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47059 * 59.99853 * 15 14 11 17 17 C 1.53001 * 109.46882 * 300.00079 * 15 14 11 18 18 C 1.50695 * 109.47463 * 180.02562 * 15 14 11 19 19 H 1.08002 * 119.99672 * 4.25950 * 18 15 14 20 20 C 1.37872 * 120.00358 * 184.25801 * 18 15 14 21 21 N 1.31515 * 119.99913 * 352.18502 * 20 18 15 22 22 Si 1.86799 * 120.00091 * 172.17922 * 20 18 15 23 23 H 1.48505 * 109.46916 * 60.00335 * 22 20 18 24 24 H 1.48499 * 109.47229 * 300.00279 * 22 20 18 25 25 H 1.48502 * 109.47137 * 180.02562 * 22 20 18 26 26 H 1.09003 * 109.47199 * 195.24392 * 1 2 3 27 27 H 1.09002 * 109.47277 * 315.23482 * 1 2 3 28 28 H 1.08994 * 109.47518 * 75.23785 * 1 2 3 29 29 H 1.08998 * 109.33225 * 46.11700 * 4 2 1 30 30 H 1.09003 * 109.14206 * 286.76361 * 4 2 1 31 31 H 1.08998 * 109.46782 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47176 * 299.98197 * 6 5 4 33 33 H 1.08995 * 109.46782 * 59.98279 * 6 5 4 34 34 H 1.09000 * 109.56639 * 227.47303 * 9 7 5 35 35 H 1.09003 * 109.66905 * 107.17352 * 9 7 5 36 36 H 1.09006 * 109.46914 * 60.00188 * 14 11 10 37 37 H 1.08998 * 109.46906 * 300.00311 * 14 11 10 38 38 H 1.08997 * 109.47509 * 171.51823 * 16 15 14 39 39 H 1.09008 * 109.47611 * 291.52423 * 16 15 14 40 40 H 1.09003 * 109.47216 * 51.51803 * 16 15 14 41 41 H 1.08991 * 109.47688 * 308.77740 * 17 15 14 42 42 H 1.09007 * 109.47036 * 68.78430 * 17 15 14 43 43 H 1.09001 * 109.46872 * 188.77414 * 17 15 14 44 44 H 0.97004 * 119.99807 * 5.30484 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0509 -0.7407 1.2390 5 7 3.4718 -1.0319 1.1064 6 6 4.2352 -1.2724 2.3334 7 6 4.1267 -1.0952 -0.0538 8 8 5.2941 -1.4239 -0.0420 9 6 3.4841 -0.7771 -1.3764 10 7 2.0268 -0.7064 -1.1928 11 16 0.9865 -1.3873 -2.2867 12 8 -0.0876 -1.8732 -1.4933 13 8 1.8015 -2.2752 -3.0395 14 6 0.4393 0.0022 -3.3165 15 6 -0.5387 -0.5042 -4.3786 16 6 -1.7503 -1.1401 -3.6943 17 6 0.1567 -1.5467 -5.2564 18 6 -0.9928 0.6500 -5.2345 19 1 -0.5695 1.6323 -5.0852 20 6 -1.9486 0.4520 -6.2082 21 7 -2.3522 -0.7663 -6.4954 22 14 -2.6705 1.9142 -7.1194 23 1 -1.5855 2.6427 -7.8247 24 1 -3.3296 2.8255 -6.1498 25 1 -3.6706 1.4368 -8.1079 26 1 -0.3634 -0.9915 0.2702 27 1 -0.3634 0.7296 0.7237 28 1 -0.3634 0.2618 -0.9937 29 1 1.5027 -1.6753 1.3576 30 1 1.8928 -0.1187 2.1200 31 1 5.2756 -1.4759 2.0800 32 1 4.1825 -0.3912 2.9727 33 1 3.8154 -2.1292 2.8604 34 1 3.7238 -1.5598 -2.0962 35 1 3.8530 0.1810 -1.7425 36 1 1.3027 0.4555 -3.8037 37 1 -0.0564 0.7447 -2.6912 38 1 -2.5128 -1.3642 -4.4403 39 1 -1.4455 -2.0615 -3.1981 40 1 -2.1561 -0.4475 -2.9569 41 1 1.1021 -1.1438 -5.6195 42 1 0.3460 -2.4466 -4.6710 43 1 -0.4829 -1.7928 -6.1041 44 1 -2.0354 -1.5184 -5.9710 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831200435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:36 Heat of formation + Delta-G solvation = -77.555857 kcal Electronic energy + Delta-G solvation = -27097.907670 eV Core-core repulsion = 23371.809821 eV Total energy + Delta-G solvation = -3726.097849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62790 -37.68423 -36.92918 -36.75511 -35.58475 -35.11777 -32.00445 -31.57339 -28.55624 -26.95279 -26.69465 -26.12832 -25.42058 -24.96270 -22.61295 -19.70126 -19.55881 -18.33413 -17.72421 -17.47068 -16.86708 -16.26627 -16.04278 -15.79428 -15.50449 -15.08157 -14.40779 -13.82871 -13.60870 -13.56009 -13.42532 -13.29400 -13.17117 -12.80290 -12.71829 -12.58727 -12.36210 -12.19777 -11.98141 -11.70067 -11.60529 -11.42567 -11.17244 -11.02113 -10.82882 -10.64303 -10.61340 -10.37555 -10.19996 -10.13350 -9.99111 -9.95353 -9.19501 -8.96733 -8.55650 -8.28709 -6.34866 -4.21594 0.54599 2.36651 2.57777 2.89438 3.36878 3.37633 3.56892 4.09913 4.11179 4.26800 4.40546 4.43481 4.67623 4.83516 4.95652 5.07027 5.11874 5.17152 5.19329 5.22994 5.30515 5.38365 5.44936 5.55901 5.60740 5.68204 5.73597 6.02124 6.08671 6.29257 6.32748 6.36645 6.42364 6.54401 6.67871 6.96205 6.98704 7.13304 7.39789 7.49178 7.88034 8.02654 8.26977 8.72399 9.49359 10.90309 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027423 B = 0.003934 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.804729 B = 7114.895700 C = 7290.139076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.141 3.859 3 H 0.087 0.913 4 C 0.105 3.895 5 N -0.605 5.605 6 C 0.068 3.932 7 C 0.516 3.484 8 O -0.549 6.549 9 C 0.106 3.894 10 N -1.012 6.012 11 S 2.591 3.409 12 O -0.953 6.953 13 O -0.960 6.960 14 C -0.575 4.575 15 C 0.067 3.933 16 C -0.174 4.174 17 C -0.175 4.175 18 C -0.583 4.583 19 H 0.054 0.946 20 C 0.025 3.975 21 N -0.912 5.912 22 Si 1.066 2.934 23 H -0.288 1.288 24 H -0.287 1.287 25 H -0.281 1.281 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.083 0.917 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.457 3.229 16.205 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.035 3.965 3 H 0.105 0.895 4 C -0.020 4.020 5 N -0.337 5.337 6 C -0.075 4.075 7 C 0.303 3.697 8 O -0.427 6.427 9 C -0.022 4.022 10 N -0.849 5.849 11 S 2.691 3.309 12 O -0.943 6.943 13 O -0.951 6.951 14 C -0.709 4.709 15 C 0.065 3.935 16 C -0.232 4.232 17 C -0.233 4.233 18 C -0.622 4.622 19 H 0.072 0.928 20 C -0.180 4.180 21 N -0.551 5.551 22 Si 0.894 3.106 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.207 1.207 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.828 2.504 14.964 16.638 hybrid contribution 1.075 0.457 1.186 1.664 sum 7.903 2.961 16.150 18.222 Atomic orbital electron populations 1.22658 0.91374 1.06214 1.04081 1.21388 0.95807 0.95819 0.83524 0.89521 1.21977 0.80117 1.01177 0.98700 1.47063 1.09920 1.69903 1.06850 1.21817 0.98972 1.00965 0.85743 1.20302 0.86703 0.76678 0.85995 1.90719 1.16926 1.48030 1.87007 1.21604 0.79405 1.05503 0.95688 1.58469 1.15841 1.73398 1.37237 1.05903 0.73549 0.77301 0.74099 1.93582 1.54636 1.79020 1.67096 1.93534 1.68075 1.61718 1.71734 1.30586 1.10464 1.17008 1.12798 1.18089 0.89482 0.95658 0.90292 1.22433 1.01549 0.98551 1.00673 1.22494 1.00905 0.97273 1.02610 1.21685 1.25474 0.94385 1.20669 0.92789 1.25753 0.94507 1.01777 0.95915 1.70867 1.46022 0.99245 1.39007 0.83584 0.76533 0.74240 0.76210 1.21455 1.21387 1.20661 0.87581 0.90420 0.91290 0.90541 0.89404 0.88947 0.92046 0.92101 0.84952 0.87833 0.86124 0.85927 0.89873 0.94765 0.93365 0.93430 0.95021 0.89867 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 7.73 37.16 0.29 -1.71 16 2 C 0.14 1.45 3.57 -67.27 -0.24 1.21 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.10 0.96 5.95 -4.26 -0.03 0.93 16 5 N -0.60 -6.70 3.20 -182.48 -0.58 -7.29 16 6 C 0.07 0.59 10.43 59.85 0.62 1.21 16 7 C 0.52 7.05 7.58 -11.73 -0.09 6.96 16 8 O -0.55 -9.00 15.97 5.55 0.09 -8.91 16 9 C 0.11 1.36 6.62 -5.02 -0.03 1.33 16 10 N -1.01 -13.43 3.22 -107.50 -0.35 -13.78 16 11 S 2.59 44.75 3.86 -107.50 -0.42 44.33 16 12 O -0.95 -17.44 11.74 -57.54 -0.68 -18.11 16 13 O -0.96 -19.28 14.27 -57.54 -0.82 -20.10 16 14 C -0.58 -10.53 4.81 37.16 0.18 -10.35 16 15 C 0.07 1.55 0.52 -155.66 -0.08 1.47 16 16 C -0.17 -3.99 7.33 37.16 0.27 -3.72 16 17 C -0.17 -4.13 7.37 37.16 0.27 -3.85 16 18 C -0.58 -15.02 8.00 -34.44 -0.28 -15.30 16 19 H 0.05 1.36 7.76 -52.49 -0.41 0.96 16 20 C 0.03 0.67 5.06 -17.82 -0.09 0.58 16 21 N -0.91 -25.64 12.13 55.43 0.67 -24.97 16 22 Si 1.07 23.68 29.91 -169.99 -5.08 18.59 16 23 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H 0.11 1.29 6.22 -51.93 -0.32 0.97 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.86 4.56 -51.93 -0.24 0.63 16 29 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 30 H 0.09 0.52 8.07 -51.93 -0.42 0.11 16 31 H 0.09 0.96 6.59 -51.93 -0.34 0.61 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.85 6.77 -51.93 -0.35 1.50 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.12 2.00 6.35 -51.93 -0.33 1.67 16 38 H 0.08 2.08 5.20 -51.93 -0.27 1.80 16 39 H 0.03 0.73 6.03 -51.92 -0.31 0.42 16 40 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 41 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 42 H 0.03 0.70 6.06 -51.92 -0.31 0.39 16 43 H 0.08 2.12 5.27 -51.93 -0.27 1.84 16 44 H 0.28 7.77 3.63 -40.82 -0.15 7.62 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -33.34 336.07 -7.61 -40.95 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.31 Total: 5.44 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 0.80 Total: -21.22 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.26 Total: -46.04 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.41 Total: -47.12 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.08 Total: 18.59 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.42 Total: 44.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.34 -7.61 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831200435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.607 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds