Wall clock time and date at job start Tue Mar 31 2020 12:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.75325 * 2 1 4 4 C 1.53460 * 109.84163 * 120.87245 * 2 1 3 5 5 N 1.45655 * 110.74066 * 166.50194 * 4 2 1 6 6 C 1.46500 * 117.70625 * 158.00063 * 5 4 2 7 7 C 1.33378 * 124.58606 * 337.98219 * 5 4 2 8 8 O 1.21284 * 118.48772 * 184.29130 * 7 5 4 9 9 C 1.50439 * 123.02514 * 4.31871 * 7 5 4 10 10 N 1.47053 * 108.88776 * 347.28753 * 9 7 5 11 11 S 1.65600 * 121.35399 * 222.71385 * 10 9 7 12 12 O 1.42102 * 104.27745 * 144.52791 * 11 10 9 13 13 O 1.42100 * 104.27462 * 16.66967 * 11 10 9 14 14 C 1.81402 * 104.45228 * 260.59861 * 11 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 11 10 16 16 C 1.52995 * 109.47059 * 59.99853 * 15 14 11 17 17 C 1.53001 * 109.46882 * 300.00079 * 15 14 11 18 18 C 1.50695 * 109.47463 * 180.02562 * 15 14 11 19 19 H 1.08002 * 119.99672 * 4.25950 * 18 15 14 20 20 C 1.37872 * 120.00358 * 184.25801 * 18 15 14 21 21 N 1.31515 * 119.99913 * 352.18502 * 20 18 15 22 22 Si 1.86799 * 120.00091 * 172.17922 * 20 18 15 23 23 H 1.48505 * 109.46916 * 60.00335 * 22 20 18 24 24 H 1.48499 * 109.47229 * 300.00279 * 22 20 18 25 25 H 1.48502 * 109.47137 * 180.02562 * 22 20 18 26 26 H 1.09003 * 109.47199 * 195.24392 * 1 2 3 27 27 H 1.09002 * 109.47277 * 315.23482 * 1 2 3 28 28 H 1.08994 * 109.47518 * 75.23785 * 1 2 3 29 29 H 1.08998 * 109.33225 * 46.11700 * 4 2 1 30 30 H 1.09003 * 109.14206 * 286.76361 * 4 2 1 31 31 H 1.08998 * 109.46782 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47176 * 299.98197 * 6 5 4 33 33 H 1.08995 * 109.46782 * 59.98279 * 6 5 4 34 34 H 1.09000 * 109.56639 * 227.47303 * 9 7 5 35 35 H 1.09003 * 109.66905 * 107.17352 * 9 7 5 36 36 H 1.09006 * 109.46914 * 60.00188 * 14 11 10 37 37 H 1.08998 * 109.46906 * 300.00311 * 14 11 10 38 38 H 1.08997 * 109.47509 * 171.51823 * 16 15 14 39 39 H 1.09008 * 109.47611 * 291.52423 * 16 15 14 40 40 H 1.09003 * 109.47216 * 51.51803 * 16 15 14 41 41 H 1.08991 * 109.47688 * 308.77740 * 17 15 14 42 42 H 1.09007 * 109.47036 * 68.78430 * 17 15 14 43 43 H 1.09001 * 109.46872 * 188.77414 * 17 15 14 44 44 H 0.97004 * 119.99807 * 5.30484 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0509 -0.7407 1.2390 5 7 3.4718 -1.0319 1.1064 6 6 4.2352 -1.2724 2.3334 7 6 4.1267 -1.0952 -0.0538 8 8 5.2941 -1.4239 -0.0420 9 6 3.4841 -0.7771 -1.3764 10 7 2.0268 -0.7064 -1.1928 11 16 0.9865 -1.3873 -2.2867 12 8 -0.0876 -1.8732 -1.4933 13 8 1.8015 -2.2752 -3.0395 14 6 0.4393 0.0022 -3.3165 15 6 -0.5387 -0.5042 -4.3786 16 6 -1.7503 -1.1401 -3.6943 17 6 0.1567 -1.5467 -5.2564 18 6 -0.9928 0.6500 -5.2345 19 1 -0.5695 1.6323 -5.0852 20 6 -1.9486 0.4520 -6.2082 21 7 -2.3522 -0.7663 -6.4954 22 14 -2.6705 1.9142 -7.1194 23 1 -1.5855 2.6427 -7.8247 24 1 -3.3296 2.8255 -6.1498 25 1 -3.6706 1.4368 -8.1079 26 1 -0.3634 -0.9915 0.2702 27 1 -0.3634 0.7296 0.7237 28 1 -0.3634 0.2618 -0.9937 29 1 1.5027 -1.6753 1.3576 30 1 1.8928 -0.1187 2.1200 31 1 5.2756 -1.4759 2.0800 32 1 4.1825 -0.3912 2.9727 33 1 3.8154 -2.1292 2.8604 34 1 3.7238 -1.5598 -2.0962 35 1 3.8530 0.1810 -1.7425 36 1 1.3027 0.4555 -3.8037 37 1 -0.0564 0.7447 -2.6912 38 1 -2.5128 -1.3642 -4.4403 39 1 -1.4455 -2.0615 -3.1981 40 1 -2.1561 -0.4475 -2.9569 41 1 1.1021 -1.1438 -5.6195 42 1 0.3460 -2.4466 -4.6710 43 1 -0.4829 -1.7928 -6.1041 44 1 -2.0354 -1.5184 -5.9710 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831200435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:35 Heat of formation + Delta-G solvation = -101.026606 kcal Electronic energy + Delta-G solvation = -27098.925438 eV Core-core repulsion = 23371.809821 eV Total energy + Delta-G solvation = -3727.115617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57491 -38.80651 -38.71807 -38.06985 -37.00569 -36.05726 -33.56403 -32.84244 -29.47803 -28.44189 -28.01563 -27.61509 -26.92697 -26.26537 -23.51113 -21.41616 -20.73156 -19.51700 -19.11673 -18.69106 -18.20954 -17.36588 -17.01547 -16.96097 -16.79055 -16.15047 -15.62537 -15.39552 -15.32249 -14.94354 -14.74537 -14.49386 -14.23114 -14.06791 -13.94799 -13.56836 -13.49936 -13.41780 -13.27890 -13.02836 -12.88267 -12.78494 -12.55848 -12.52381 -12.40375 -12.29345 -11.97344 -11.90290 -11.81398 -11.77407 -11.68950 -11.25890 -10.52543 -10.30538 -10.06867 -9.82171 -8.39980 -6.28240 -0.81596 1.34860 1.51820 1.58453 1.64269 1.83079 1.94339 2.60941 2.76764 3.08744 3.21208 3.23119 3.43333 3.72505 3.85715 3.96093 4.08633 4.15928 4.29248 4.31780 4.42846 4.47452 4.50499 4.54371 4.59602 4.61078 4.67389 4.78149 4.80692 4.83322 4.93878 4.96639 5.07894 5.15422 5.20254 5.45453 5.47764 5.54682 5.61664 6.08373 6.23580 6.26703 6.68013 6.91724 7.50816 8.85728 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027423 B = 0.003934 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.804729 B = 7114.895700 C = 7290.139076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.134 3.866 3 H 0.119 0.881 4 C 0.101 3.899 5 N -0.602 5.602 6 C 0.064 3.936 7 C 0.510 3.490 8 O -0.586 6.586 9 C 0.102 3.898 10 N -1.005 6.005 11 S 2.610 3.390 12 O -0.966 6.966 13 O -0.994 6.994 14 C -0.579 4.579 15 C 0.053 3.947 16 C -0.168 4.168 17 C -0.171 4.171 18 C -0.590 4.590 19 H 0.058 0.942 20 C -0.023 4.023 21 N -0.942 5.942 22 Si 1.107 2.893 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.291 1.291 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 5.486 18.562 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.029 3.971 3 H 0.137 0.863 4 C -0.023 4.023 5 N -0.333 5.333 6 C -0.078 4.078 7 C 0.297 3.703 8 O -0.467 6.467 9 C -0.025 4.025 10 N -0.845 5.845 11 S 2.710 3.290 12 O -0.956 6.956 13 O -0.984 6.984 14 C -0.711 4.711 15 C 0.051 3.949 16 C -0.226 4.226 17 C -0.230 4.230 18 C -0.629 4.629 19 H 0.076 0.924 20 C -0.223 4.223 21 N -0.583 5.583 22 Si 0.930 3.070 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.217 1.217 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.081 4.772 17.349 19.336 hybrid contribution 1.013 -0.268 0.572 1.194 sum 8.094 4.504 17.921 20.174 Atomic orbital electron populations 1.22667 0.91649 1.06331 1.04000 1.21784 0.95651 0.97260 0.82397 0.86306 1.22183 0.78611 1.01724 0.99733 1.47206 1.10799 1.68470 1.06787 1.21981 0.97595 1.03046 0.85143 1.20386 0.86381 0.76655 0.86852 1.90706 1.18471 1.50028 1.87531 1.21707 0.78866 1.06563 0.95397 1.58122 1.15475 1.73602 1.37290 1.05051 0.73337 0.76685 0.73938 1.93577 1.55628 1.79351 1.67067 1.93489 1.68859 1.62995 1.73081 1.30536 1.10048 1.18242 1.12322 1.18093 0.90587 0.94804 0.91398 1.22349 1.00962 0.99188 1.00139 1.22441 1.00500 0.97967 1.02055 1.22044 1.24946 0.95275 1.20646 0.92408 1.26987 0.95120 1.03038 0.97121 1.70939 1.47406 0.99942 1.40010 0.83049 0.76176 0.72160 0.75569 1.19972 1.19399 1.21685 0.89365 0.86701 0.93146 0.91176 0.85011 0.91016 0.88947 0.90735 0.86681 0.84907 0.84878 0.83717 0.92441 0.94172 0.92218 0.93149 0.94582 0.92302 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.43 7.73 71.98 0.56 -2.87 16 2 C 0.13 2.25 3.57 45.00 0.16 2.41 16 3 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 4 C 0.10 1.45 5.95 86.69 0.52 1.96 16 5 N -0.60 -11.62 3.20 -850.42 -2.72 -14.34 16 6 C 0.06 0.94 10.43 127.77 1.33 2.27 16 7 C 0.51 13.15 7.58 87.79 0.67 13.82 16 8 O -0.59 -18.99 15.97 -3.04 -0.05 -19.04 16 9 C 0.10 2.48 6.62 85.45 0.57 3.04 16 10 N -1.01 -24.50 3.22 -494.03 -1.59 -26.09 16 11 S 2.61 87.68 3.86 -56.49 -0.22 87.47 16 12 O -0.97 -34.54 11.74 -127.65 -1.50 -36.04 16 13 O -0.99 -40.06 14.27 -127.65 -1.82 -41.88 16 14 C -0.58 -20.39 4.81 71.98 0.35 -20.04 16 15 C 0.05 2.46 0.52 -52.93 -0.03 2.43 16 16 C -0.17 -7.76 7.33 71.98 0.53 -7.23 16 17 C -0.17 -8.26 7.37 71.98 0.53 -7.73 16 18 C -0.59 -30.13 8.00 25.60 0.20 -29.93 16 19 H 0.06 2.84 7.76 -2.91 -0.02 2.81 16 20 C -0.02 -1.25 5.06 84.65 0.43 -0.82 16 21 N -0.94 -54.19 12.13 21.45 0.26 -53.93 16 22 Si 1.11 47.25 29.91 68.60 2.05 49.31 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H 0.09 1.95 6.22 -2.39 -0.01 1.94 16 27 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.12 4.56 -2.39 -0.01 1.11 16 29 H 0.07 1.14 7.89 -2.39 -0.02 1.12 16 30 H 0.13 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.07 1.39 6.59 -2.39 -0.02 1.38 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 3.22 6.77 -2.39 -0.02 3.20 16 35 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 37 H 0.14 4.37 6.35 -2.39 -0.02 4.36 16 38 H 0.06 2.94 5.20 -2.39 -0.01 2.93 16 39 H 0.04 1.75 6.03 -2.38 -0.01 1.73 16 40 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 41 H 0.05 2.30 8.12 -2.39 -0.02 2.28 16 42 H 0.04 1.65 6.06 -2.38 -0.01 1.64 16 43 H 0.06 3.10 5.27 -2.39 -0.01 3.09 16 44 H 0.28 15.74 3.63 -92.71 -0.34 15.40 16 Total: -1.00 -74.03 336.07 1.66 -72.37 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.44 Total: 24.86 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 5.81 Total: -42.69 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.05 Total: -94.36 kcal Atomic # 8 Polarization: -93.58 SS G_CDS: -3.37 Total: -96.95 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.05 Total: 49.31 kcal Atomic # 16 Polarization: 87.68 SS G_CDS: -0.22 Total: 87.47 kcal Total: -74.03 1.66 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831200435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.655 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds