Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.71581 * 2 1 4 4 C 1.52987 * 109.75805 * 239.37172 * 2 1 3 5 5 N 1.45645 * 110.77122 * 287.02816 * 4 2 1 6 6 C 1.46505 * 117.70425 * 158.09995 * 5 4 2 7 7 C 1.33382 * 124.59346 * 338.07802 * 5 4 2 8 8 O 1.21277 * 118.48927 * 184.33959 * 7 5 4 9 9 C 1.50073 * 123.00517 * 4.16662 * 7 5 4 10 10 N 1.47056 * 109.08822 * 347.58506 * 9 7 5 11 11 S 1.65595 * 121.35825 * 222.69118 * 10 9 7 12 12 O 1.42093 * 104.27935 * 153.64254 * 11 10 9 13 13 O 1.42105 * 104.27413 * 25.78304 * 11 10 9 14 14 C 1.81401 * 104.44822 * 269.71723 * 11 10 9 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 11 10 16 16 C 1.53006 * 109.47127 * 300.00121 * 15 14 11 17 17 C 1.52999 * 109.47317 * 59.99631 * 15 14 11 18 18 C 1.50697 * 109.47466 * 179.97438 * 15 14 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 H 1.08995 * 109.47426 * 299.38669 * 1 2 3 27 27 H 1.09005 * 109.46589 * 59.38795 * 1 2 3 28 28 H 1.08995 * 109.46802 * 179.37963 * 1 2 3 29 29 H 1.09001 * 109.22188 * 47.36208 * 4 2 1 30 30 H 1.09004 * 109.21934 * 166.73899 * 4 2 1 31 31 H 1.09004 * 109.47250 * 90.00318 * 6 5 4 32 32 H 1.09004 * 109.46976 * 209.99988 * 6 5 4 33 33 H 1.09004 * 109.47041 * 330.00109 * 6 5 4 34 34 H 1.09005 * 109.53250 * 227.67100 * 9 7 5 35 35 H 1.08997 * 109.41558 * 107.43195 * 9 7 5 36 36 H 1.09002 * 109.47085 * 299.99812 * 14 11 10 37 37 H 1.09001 * 109.47417 * 59.99938 * 14 11 10 38 38 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 17 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47362 * 300.00732 * 17 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0472 -0.7335 -1.2389 5 7 1.8465 -2.1703 -1.1099 6 6 1.8153 -2.9668 -2.3391 7 6 1.6895 -2.8119 0.0489 8 8 1.6095 -4.0220 0.0340 9 6 1.6110 -2.1052 1.3705 10 7 2.0270 -0.7059 1.1931 11 16 3.0193 0.0434 2.2867 12 8 3.6764 1.0512 1.5306 13 8 3.7505 -1.0197 2.8821 14 6 1.8853 0.7884 3.4906 15 6 2.6915 1.5188 4.5665 16 6 3.6100 0.5238 5.2789 17 6 3.5358 2.6155 3.9146 18 6 1.7494 2.1383 5.5663 19 1 0.6823 2.0223 5.4466 20 6 2.2497 2.8522 6.6345 21 7 3.5492 2.9930 6.7805 22 14 1.0819 3.6207 7.8735 23 1 0.2611 2.5569 8.5059 24 1 1.8644 4.3284 8.9184 25 1 0.1918 4.5871 7.1814 26 1 -0.3634 0.5042 0.8954 27 1 -0.3633 0.5234 -0.8845 28 1 -0.3633 -1.0276 -0.0111 29 1 1.5124 -0.3741 -2.1181 30 1 3.1113 -0.5299 -1.3584 31 1 2.8242 -3.3008 -2.5813 32 1 1.1706 -3.8337 -2.1940 33 1 1.4278 -2.3586 -3.1564 34 1 2.2725 -2.5948 2.0854 35 1 0.5855 -2.1374 1.7383 36 1 1.2307 1.4969 2.9830 37 1 1.2841 0.0070 3.9554 38 1 4.2913 0.0762 4.5555 39 1 4.1846 1.0442 6.0451 40 1 3.0085 -0.2576 5.7434 41 1 2.8815 3.3243 3.4070 42 1 4.1105 3.1356 4.6810 43 1 4.2172 2.1679 3.1911 44 1 3.9012 3.4949 7.5322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831200436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -93.402240 kcal Electronic energy + Delta-G solvation = -26882.884935 eV Core-core repulsion = 23156.099935 eV Total energy + Delta-G solvation = -3726.784999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68042 -37.44704 -36.71420 -36.34094 -35.45276 -35.06548 -31.72672 -31.56473 -28.39321 -27.50607 -26.68452 -25.77427 -25.36206 -25.26647 -22.41888 -19.74705 -19.30169 -17.94848 -17.76170 -17.41982 -16.34519 -16.24890 -15.87978 -15.52376 -15.32617 -14.83953 -14.73739 -14.09552 -13.86624 -13.44494 -13.25236 -13.14927 -13.03353 -12.62713 -12.56405 -12.53282 -12.30175 -12.11991 -11.84164 -11.79362 -11.50900 -11.21113 -11.17728 -11.07585 -11.01580 -10.76208 -10.46034 -10.34294 -10.29744 -10.12453 -9.71013 -9.66804 -9.12339 -8.93033 -8.70726 -8.44131 -6.07566 -4.20006 0.64024 2.43172 2.64511 2.97362 3.24239 3.30203 3.31445 4.21259 4.25141 4.29368 4.34106 4.44574 4.73881 4.88639 4.97487 5.09140 5.10600 5.17543 5.23726 5.25639 5.37282 5.40961 5.54504 5.59528 5.62066 5.63864 5.79839 5.97306 6.07663 6.30377 6.37344 6.64177 6.73526 6.84034 6.97840 7.19244 7.25741 7.44523 7.63391 7.92942 7.94043 8.04173 8.27733 8.78232 9.45728 10.93718 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.003841 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.394566 B = 7288.663136 C = 7375.740247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 H 0.122 0.878 4 C 0.106 3.894 5 N -0.603 5.603 6 C 0.077 3.923 7 C 0.517 3.483 8 O -0.549 6.549 9 C 0.106 3.894 10 N -1.010 6.010 11 S 2.590 3.410 12 O -0.956 6.956 13 O -0.956 6.956 14 C -0.578 4.578 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -5.459 -15.998 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.140 0.860 4 C -0.019 4.019 5 N -0.336 5.336 6 C -0.065 4.065 7 C 0.304 3.696 8 O -0.426 6.426 9 C -0.022 4.022 10 N -0.847 5.847 11 S 2.690 3.310 12 O -0.947 6.947 13 O -0.947 6.947 14 C -0.711 4.711 15 C 0.079 3.921 16 C -0.222 4.222 17 C -0.221 4.221 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.899 -6.014 -15.934 17.721 hybrid contribution -1.327 0.645 0.854 1.705 sum -6.226 -5.369 -15.080 17.175 Atomic orbital electron populations 1.22179 0.94057 1.02802 1.03324 1.21346 0.95203 0.97375 0.83652 0.86042 1.21839 1.02080 0.79254 0.98687 1.47064 1.71501 1.08214 1.06786 1.21744 1.02478 0.96750 0.85574 1.20164 0.75817 0.87673 0.85944 1.90733 1.50880 1.13871 1.87158 1.21507 1.03925 0.81010 0.95800 1.58479 1.68781 1.20020 1.37371 1.05941 0.75861 0.74404 0.74768 1.93536 1.71693 1.59778 1.69676 1.93549 1.68637 1.54918 1.77564 1.30560 1.14877 1.11523 1.14188 1.17951 0.92497 0.91690 0.89933 1.22283 0.99492 0.98155 1.02260 1.22275 0.99643 1.00153 1.00016 1.20882 0.92277 1.33097 1.08026 0.92327 1.24936 0.95206 0.95921 0.97614 1.69790 1.11074 1.40845 1.30404 0.86587 0.80751 0.79397 0.80839 1.20249 1.21163 1.20261 0.91065 0.90962 0.92213 0.89319 0.90769 0.92574 0.90303 0.91168 0.85131 0.87918 0.86270 0.86229 0.95431 0.88593 0.94385 0.94435 0.88607 0.95447 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.04 37.16 0.34 -1.00 16 2 C 0.13 1.34 3.19 -67.52 -0.22 1.12 16 3 H 0.12 1.22 7.07 -51.93 -0.37 0.85 16 4 C 0.11 0.96 5.94 -4.51 -0.03 0.93 16 5 N -0.60 -6.60 3.10 -182.93 -0.57 -7.17 16 6 C 0.08 0.67 10.19 59.85 0.61 1.28 16 7 C 0.52 7.03 7.02 -11.91 -0.08 6.94 16 8 O -0.55 -9.04 16.25 5.56 0.09 -8.95 16 9 C 0.11 1.35 5.82 -5.19 -0.03 1.32 16 10 N -1.01 -13.32 3.02 -107.95 -0.33 -13.64 16 11 S 2.59 45.34 4.51 -107.50 -0.49 44.86 16 12 O -0.96 -18.41 14.36 -57.54 -0.83 -19.24 16 13 O -0.96 -19.39 14.26 -57.54 -0.82 -20.21 16 14 C -0.58 -10.57 5.12 37.16 0.19 -10.38 16 15 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 16 C -0.16 -3.94 7.78 37.16 0.29 -3.66 16 17 C -0.16 -3.86 7.77 37.16 0.29 -3.57 16 18 C -0.50 -12.82 8.01 -34.44 -0.28 -13.09 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 21 N -0.88 -23.63 9.35 55.43 0.52 -23.11 16 22 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 6.83 -51.93 -0.35 0.15 16 29 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.76 7.23 -51.93 -0.38 0.39 16 33 H 0.07 0.40 7.80 -51.93 -0.41 -0.01 16 34 H 0.13 1.80 6.89 -51.93 -0.36 1.45 16 35 H 0.10 1.04 7.85 -51.93 -0.41 0.63 16 36 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 37 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 38 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 39 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 43 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -32.76 346.98 -8.09 -40.85 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.79 Total: 2.86 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 0.91 Total: -16.67 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.37 Total: -43.92 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.56 Total: -48.40 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 45.34 SS G_CDS: -0.49 Total: 44.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.76 -8.09 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831200436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.553 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds