Wall clock time and date at job start Tue Mar 31 2020 12:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.71581 * 2 1 4 4 C 1.52987 * 109.75805 * 239.37172 * 2 1 3 5 5 N 1.45645 * 110.77122 * 287.02816 * 4 2 1 6 6 C 1.46505 * 117.70425 * 158.09995 * 5 4 2 7 7 C 1.33382 * 124.59346 * 338.07802 * 5 4 2 8 8 O 1.21277 * 118.48927 * 184.33959 * 7 5 4 9 9 C 1.50073 * 123.00517 * 4.16662 * 7 5 4 10 10 N 1.47056 * 109.08822 * 347.58506 * 9 7 5 11 11 S 1.65595 * 121.35825 * 222.69118 * 10 9 7 12 12 O 1.42093 * 104.27935 * 153.64254 * 11 10 9 13 13 O 1.42105 * 104.27413 * 25.78304 * 11 10 9 14 14 C 1.81401 * 104.44822 * 269.71723 * 11 10 9 15 15 C 1.52997 * 109.47149 * 179.97438 * 14 11 10 16 16 C 1.53006 * 109.47127 * 300.00121 * 15 14 11 17 17 C 1.52999 * 109.47317 * 59.99631 * 15 14 11 18 18 C 1.50697 * 109.47466 * 179.97438 * 15 14 11 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 H 1.08995 * 109.47426 * 299.38669 * 1 2 3 27 27 H 1.09005 * 109.46589 * 59.38795 * 1 2 3 28 28 H 1.08995 * 109.46802 * 179.37963 * 1 2 3 29 29 H 1.09001 * 109.22188 * 47.36208 * 4 2 1 30 30 H 1.09004 * 109.21934 * 166.73899 * 4 2 1 31 31 H 1.09004 * 109.47250 * 90.00318 * 6 5 4 32 32 H 1.09004 * 109.46976 * 209.99988 * 6 5 4 33 33 H 1.09004 * 109.47041 * 330.00109 * 6 5 4 34 34 H 1.09005 * 109.53250 * 227.67100 * 9 7 5 35 35 H 1.08997 * 109.41558 * 107.43195 * 9 7 5 36 36 H 1.09002 * 109.47085 * 299.99812 * 14 11 10 37 37 H 1.09001 * 109.47417 * 59.99938 * 14 11 10 38 38 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 17 15 14 42 42 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47362 * 300.00732 * 17 15 14 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0472 -0.7335 -1.2389 5 7 1.8465 -2.1703 -1.1099 6 6 1.8153 -2.9668 -2.3391 7 6 1.6895 -2.8119 0.0489 8 8 1.6095 -4.0220 0.0340 9 6 1.6110 -2.1052 1.3705 10 7 2.0270 -0.7059 1.1931 11 16 3.0193 0.0434 2.2867 12 8 3.6764 1.0512 1.5306 13 8 3.7505 -1.0197 2.8821 14 6 1.8853 0.7884 3.4906 15 6 2.6915 1.5188 4.5665 16 6 3.6100 0.5238 5.2789 17 6 3.5358 2.6155 3.9146 18 6 1.7494 2.1383 5.5663 19 1 0.6823 2.0223 5.4466 20 6 2.2497 2.8522 6.6345 21 7 3.5492 2.9930 6.7805 22 14 1.0819 3.6207 7.8735 23 1 0.2611 2.5569 8.5059 24 1 1.8644 4.3284 8.9184 25 1 0.1918 4.5871 7.1814 26 1 -0.3634 0.5042 0.8954 27 1 -0.3633 0.5234 -0.8845 28 1 -0.3633 -1.0276 -0.0111 29 1 1.5124 -0.3741 -2.1181 30 1 3.1113 -0.5299 -1.3584 31 1 2.8242 -3.3008 -2.5813 32 1 1.1706 -3.8337 -2.1940 33 1 1.4278 -2.3586 -3.1564 34 1 2.2725 -2.5948 2.0854 35 1 0.5855 -2.1374 1.7383 36 1 1.2307 1.4969 2.9830 37 1 1.2841 0.0070 3.9554 38 1 4.2913 0.0762 4.5555 39 1 4.1846 1.0442 6.0451 40 1 3.0085 -0.2576 5.7434 41 1 2.8815 3.3243 3.4070 42 1 4.1105 3.1356 4.6810 43 1 4.2172 2.1679 3.1911 44 1 3.9012 3.4949 7.5322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831200436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:39 Heat of formation + Delta-G solvation = -116.357147 kcal Electronic energy + Delta-G solvation = -26883.880334 eV Core-core repulsion = 23156.099935 eV Total energy + Delta-G solvation = -3727.780399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62362 -38.49409 -38.16255 -38.08928 -36.94027 -36.00070 -33.62254 -32.43927 -29.35733 -28.26819 -28.17244 -27.68536 -27.23208 -26.21128 -23.28100 -21.33365 -20.67749 -19.10355 -18.85513 -18.42588 -17.93986 -17.31467 -17.10443 -16.83507 -16.71393 -16.51971 -15.83265 -15.17484 -14.86380 -14.73009 -14.60953 -14.41728 -14.23483 -14.01444 -13.88205 -13.68084 -13.30705 -13.10957 -13.08933 -12.94494 -12.84946 -12.80389 -12.69735 -12.52557 -12.41511 -12.18466 -12.16110 -11.97529 -11.94849 -11.55535 -11.37476 -11.33637 -10.65875 -10.39850 -10.06273 -9.79077 -8.01861 -6.20497 -0.74226 1.40629 1.46660 1.47621 1.54247 1.58446 2.00421 2.45421 2.85346 3.11744 3.21413 3.36396 3.50863 3.91595 3.99057 4.07327 4.16361 4.19026 4.35029 4.45111 4.48396 4.54117 4.60406 4.60713 4.72693 4.86780 4.87146 4.90459 4.93599 4.99580 5.06074 5.08659 5.24541 5.35526 5.40303 5.47940 5.53745 5.65949 5.98453 6.12529 6.29164 6.34888 6.84357 6.96798 7.48049 8.97690 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.003841 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.394566 B = 7288.663136 C = 7375.740247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.125 0.875 4 C 0.101 3.899 5 N -0.599 5.599 6 C 0.074 3.926 7 C 0.511 3.489 8 O -0.587 6.587 9 C 0.103 3.897 10 N -1.002 6.002 11 S 2.609 3.391 12 O -0.976 6.976 13 O -0.989 6.989 14 C -0.580 4.580 15 C 0.068 3.932 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.516 4.516 19 H 0.065 0.935 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 0.953 3.047 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.270 1.270 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 -5.007 -17.916 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.143 0.857 4 C -0.022 4.022 5 N -0.330 5.330 6 C -0.068 4.068 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.025 4.025 10 N -0.841 5.841 11 S 2.709 3.291 12 O -0.966 6.966 13 O -0.980 6.980 14 C -0.713 4.713 15 C 0.066 3.934 16 C -0.219 4.219 17 C -0.216 4.216 18 C -0.555 4.555 19 H 0.083 0.917 20 C -0.181 4.181 21 N -0.547 5.547 22 Si 0.779 3.221 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.195 1.195 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.038 -5.524 -17.871 19.986 hybrid contribution -0.649 0.493 1.349 1.576 sum -7.686 -5.031 -16.523 18.905 Atomic orbital electron populations 1.22178 0.91928 1.03083 1.04713 1.21751 0.96922 0.97377 0.82576 0.85684 1.22068 1.02465 0.77948 0.99750 1.47188 1.69840 1.09229 1.06725 1.21912 1.02380 0.96939 0.85593 1.20260 0.75794 0.87261 0.86836 1.90715 1.53043 1.15334 1.87703 1.21604 1.05142 0.80254 0.95528 1.58077 1.68488 1.20088 1.37403 1.05047 0.75731 0.73685 0.74640 1.93500 1.72535 1.60636 1.69953 1.93503 1.70035 1.55819 1.78621 1.30477 1.14981 1.12334 1.13525 1.17940 0.92590 0.91725 0.91144 1.22218 0.99632 0.98201 1.01805 1.22192 0.99720 1.00392 0.99326 1.21260 0.92943 1.32845 1.08482 0.91676 1.25665 0.96404 0.96642 0.99415 1.69942 1.12493 1.41483 1.30773 0.85692 0.78997 0.78670 0.78744 1.19844 1.21548 1.19493 0.91131 0.88179 0.92457 0.84938 0.91366 0.92778 0.91596 0.87355 0.86688 0.85118 0.83883 0.84532 0.95076 0.91149 0.94192 0.93685 0.91258 0.94944 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.04 71.98 0.65 -1.31 16 2 C 0.12 2.06 3.19 44.84 0.14 2.21 16 3 H 0.13 2.13 7.07 -2.38 -0.02 2.11 16 4 C 0.10 1.49 5.94 86.54 0.51 2.00 16 5 N -0.60 -11.65 3.10 -851.82 -2.64 -14.29 16 6 C 0.07 1.09 10.19 127.77 1.30 2.39 16 7 C 0.51 13.27 7.02 87.68 0.62 13.89 16 8 O -0.59 -19.20 16.25 -3.02 -0.05 -19.25 16 9 C 0.10 2.48 5.82 85.33 0.50 2.98 16 10 N -1.00 -24.53 3.02 -495.45 -1.50 -26.03 16 11 S 2.61 88.81 4.51 -56.49 -0.25 88.56 16 12 O -0.98 -36.60 14.36 -127.65 -1.83 -38.44 16 13 O -0.99 -40.21 14.26 -127.65 -1.82 -42.03 16 14 C -0.58 -20.31 5.12 71.98 0.37 -19.94 16 15 C 0.07 3.16 0.52 -52.93 -0.03 3.13 16 16 C -0.16 -7.84 7.78 71.98 0.56 -7.28 16 17 C -0.16 -7.52 7.77 71.98 0.56 -6.96 16 18 C -0.52 -25.92 8.01 25.60 0.21 -25.72 16 19 H 0.07 3.11 7.74 -2.91 -0.02 3.08 16 20 C 0.02 0.94 5.15 84.65 0.44 1.38 16 21 N -0.91 -49.48 9.35 21.45 0.20 -49.28 16 22 Si 0.95 41.15 29.54 68.60 2.03 43.17 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.75 6.83 -2.39 -0.02 0.74 16 29 H 0.13 0.84 7.79 -2.39 -0.02 0.82 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.18 7.23 -2.39 -0.02 1.16 16 33 H 0.11 0.77 7.80 -2.39 -0.02 0.75 16 34 H 0.12 3.18 6.89 -2.38 -0.02 3.16 16 35 H 0.13 2.38 7.85 -2.39 -0.02 2.36 16 36 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 37 H 0.14 4.26 8.14 -2.39 -0.02 4.25 16 38 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 39 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 43 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 44 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -71.85 346.98 0.95 -70.90 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.99 Total: 19.91 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.82 Total: -33.24 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.94 Total: -89.59 kcal Atomic # 8 Polarization: -96.01 SS G_CDS: -3.70 Total: -99.71 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 88.81 SS G_CDS: -0.25 Total: 88.56 kcal Total: -71.85 0.95 -70.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831200436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.459 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds