Wall clock time and date at job start Tue Mar 31 2020 13:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47253 * 2 1 4 4 C 1.46760 * 124.34849 * 89.99830 * 3 2 1 5 5 C 1.54473 * 105.47379 * 163.00835 * 4 3 2 6 6 H 1.08999 * 110.96842 * 267.26044 * 5 4 3 7 7 N 1.46500 * 110.97154 * 143.53454 * 5 4 3 8 8 C 1.34774 * 120.00217 * 154.99775 * 7 5 4 9 9 O 1.21593 * 119.99839 * 0.02562 * 8 7 5 10 10 C 1.47534 * 120.00107 * 180.27476 * 8 7 5 11 11 C 1.39668 * 120.19790 * 359.44890 * 10 8 7 12 12 C 1.37828 * 119.91876 * 179.71872 * 11 10 8 13 13 C 1.38576 * 120.32310 * 0.55968 * 12 11 10 14 14 C 1.38025 * 120.39914 * 359.71918 * 13 12 11 15 15 C 1.38828 * 120.07713 * 359.97438 * 14 13 12 16 16 O 1.35516 * 120.16345 * 180.02562 * 15 14 13 17 17 C 1.34811 * 117.00125 * 354.40165 * 16 15 14 18 18 H 1.08004 * 119.99841 * 5.05304 * 17 16 15 19 19 C 1.38702 * 120.00258 * 185.05052 * 17 16 15 20 20 N 1.31517 * 120.00163 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99575 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47259 * 90.00030 * 21 19 17 23 23 H 1.48499 * 109.46754 * 209.99695 * 21 19 17 24 24 H 1.48498 * 109.47240 * 329.99482 * 21 19 17 25 25 C 1.54632 * 101.76531 * 25.41298 * 5 4 3 26 26 C 1.34416 * 124.35046 * 270.02538 * 3 2 1 27 27 O 1.21282 * 124.93749 * 0.38298 * 26 3 2 28 28 H 1.09002 * 109.46781 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47413 * 300.00209 * 1 2 3 30 30 H 1.09004 * 109.46772 * 60.00141 * 1 2 3 31 31 H 1.09005 * 109.47539 * 240.00299 * 2 1 3 32 32 H 1.09004 * 109.47276 * 120.00018 * 2 1 3 33 33 H 1.09000 * 110.24969 * 44.00174 * 4 3 2 34 34 H 1.09003 * 110.24442 * 282.00924 * 4 3 2 35 35 H 0.97001 * 120.00044 * 334.99876 * 7 5 4 36 36 H 1.07999 * 120.03838 * 359.97438 * 11 10 8 37 37 H 1.07995 * 119.83508 * 180.25747 * 12 11 10 38 38 H 1.07998 * 119.79931 * 179.73768 * 13 12 11 39 39 H 1.08005 * 119.96134 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99887 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.48285 * 93.88181 * 25 5 4 42 42 H 1.09002 * 110.48524 * 216.52415 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1739 3.3444 0.7486 6 1 4.2327 3.1041 0.8451 7 7 2.8461 4.5640 1.4911 8 6 3.7678 5.5376 1.6286 9 8 4.8714 5.4040 1.1359 10 6 3.4396 6.7632 2.3815 11 6 2.1712 6.9238 2.9437 12 6 1.8727 8.0686 3.6509 13 6 2.8216 9.0678 3.7976 14 6 4.0773 8.9254 3.2426 15 6 4.3979 7.7765 2.5324 16 8 5.6304 7.6347 1.9871 17 6 6.4617 8.6927 2.0699 18 1 6.1650 9.5704 2.6250 19 6 7.6981 8.6541 1.4424 20 7 8.5089 9.6865 1.5228 21 14 8.2108 7.1362 0.4819 22 1 7.7756 7.2741 -0.9311 23 1 9.6881 6.9938 0.5331 24 1 7.5766 5.9341 1.0802 25 6 2.7687 3.4757 -0.7378 26 6 2.2707 2.0965 -1.1097 27 8 2.1210 1.6945 -2.2442 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8326 1.5532 1.9382 34 1 1.3637 2.5304 1.6431 35 1 1.9656 4.6708 1.8839 36 1 1.4267 6.1501 2.8281 37 1 0.8929 8.1895 4.0887 38 1 2.5772 9.9631 4.3499 39 1 4.8113 9.7088 3.3609 40 1 9.3733 9.6596 1.0836 41 1 1.9734 4.2122 -0.8528 42 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834297158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:18 Heat of formation + Delta-G solvation = -60.264221 kcal Electronic energy + Delta-G solvation = -26371.176552 eV Core-core repulsion = 22510.384574 eV Total energy + Delta-G solvation = -3860.791978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.81810 -39.74473 -38.35473 -36.68909 -36.54332 -34.86906 -32.64111 -32.49429 -30.68766 -29.27383 -29.07749 -27.60444 -25.37333 -23.98504 -23.34763 -21.98545 -21.11338 -20.38299 -19.58223 -18.01953 -17.96592 -17.03471 -16.81567 -16.24561 -15.87006 -15.21611 -14.79265 -14.59965 -14.46674 -14.25497 -14.07736 -13.88485 -13.82926 -13.72892 -13.49510 -13.18398 -12.89417 -12.63272 -12.41351 -12.29675 -12.21728 -11.95353 -11.48495 -11.42577 -11.40481 -11.30055 -10.88831 -10.75970 -10.11683 -10.09055 -9.69019 -9.18409 -9.03957 -8.95871 -8.92637 -8.45884 -7.54459 -6.51545 -4.16908 1.48927 2.12701 2.41326 2.63934 3.26912 3.29918 3.35471 3.43419 3.62306 4.14755 4.27927 4.31226 4.45889 4.65916 4.67782 4.72435 4.78508 4.89549 5.01748 5.04676 5.14809 5.21315 5.29967 5.31323 5.36061 5.50470 5.57143 5.73334 5.78556 5.81025 5.92295 5.97285 6.25257 6.30665 6.46639 6.57267 6.75461 6.83306 6.94180 7.08970 7.41886 7.60689 7.77330 7.90016 7.96518 8.70969 8.83672 9.45637 10.53411 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003746 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.209136 B = 7472.478192 C = 9106.794725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.099 3.901 5 C 0.141 3.859 6 H 0.114 0.886 7 N -0.732 5.732 8 C 0.565 3.435 9 O -0.512 6.512 10 C -0.229 4.229 11 C -0.040 4.040 12 C -0.221 4.221 13 C -0.050 4.050 14 C -0.226 4.226 15 C 0.202 3.798 16 O -0.164 6.164 17 C -0.397 4.397 18 H 0.109 0.891 19 C 0.072 3.928 20 N -0.868 5.868 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.239 1.239 25 C -0.170 4.170 26 C 0.523 3.477 27 O -0.531 6.531 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.282 0.718 41 H 0.109 0.891 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 -14.059 3.152 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.025 4.025 5 C 0.034 3.966 6 H 0.132 0.868 7 N -0.388 5.388 8 C 0.355 3.645 9 O -0.387 6.387 10 C -0.234 4.234 11 C -0.058 4.058 12 C -0.240 4.240 13 C -0.068 4.068 14 C -0.245 4.245 15 C 0.144 3.856 16 O -0.064 6.064 17 C -0.472 4.472 18 H 0.126 0.874 19 C -0.134 4.134 20 N -0.503 5.503 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.161 1.161 25 C -0.212 4.212 26 C 0.311 3.689 27 O -0.407 6.407 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.940 -14.529 2.000 20.936 hybrid contribution -0.233 -0.199 -0.033 0.308 sum -15.173 -14.728 1.968 21.237 Atomic orbital electron populations 1.22162 0.95751 1.02358 1.02518 1.21361 0.94386 0.81026 1.03258 1.48329 1.66360 1.13857 1.07042 1.22313 0.99670 0.92934 0.87600 1.21600 1.00920 0.84334 0.89711 0.86836 1.45806 1.17066 1.17860 1.58022 1.18225 0.83951 0.82642 0.79664 1.90876 1.21461 1.78927 1.47480 1.18765 0.95191 0.96713 1.12701 1.20744 0.93600 0.96760 0.94738 1.20541 0.99937 0.96124 1.07443 1.20980 0.92673 0.97475 0.95686 1.21296 0.98558 0.99941 1.04739 1.19009 0.84621 0.91765 0.90251 1.83767 1.18684 1.38620 1.65328 1.20928 0.97153 0.94486 1.34618 0.87407 1.24505 0.94450 0.98284 0.96132 1.69633 1.09595 1.29510 1.41586 0.86193 0.76850 0.83831 0.80595 1.19868 1.21225 1.16140 1.22897 1.04376 0.95444 0.98473 1.20922 0.76252 0.87466 0.84281 1.90717 1.53572 1.75298 1.21153 0.91408 0.92363 0.92210 0.89947 0.90240 0.89425 0.90592 0.76732 0.86849 0.86986 0.86807 0.84394 0.90750 0.87246 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 0.93 6.65 -4.04 -0.03 0.90 16 3 N -0.62 -5.95 2.93 -172.42 -0.51 -6.46 16 4 C 0.10 0.77 7.08 -3.13 -0.02 0.75 16 5 C 0.14 1.57 3.53 -66.30 -0.23 1.34 16 6 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 7 N -0.73 -8.98 5.10 -53.27 -0.27 -9.25 16 8 C 0.56 10.27 7.76 -12.47 -0.10 10.17 16 9 O -0.51 -11.77 14.81 -16.57 -0.25 -12.01 16 10 C -0.23 -4.28 5.89 -104.81 -0.62 -4.90 16 11 C -0.04 -0.57 9.54 -39.20 -0.37 -0.94 16 12 C -0.22 -3.17 10.03 -39.61 -0.40 -3.57 16 13 C -0.05 -0.80 10.03 -39.53 -0.40 -1.20 16 14 C -0.23 -4.56 9.16 -39.44 -0.36 -4.92 16 15 C 0.20 4.53 6.66 -38.60 -0.26 4.27 16 16 O -0.16 -4.35 6.67 -21.03 -0.14 -4.49 16 17 C -0.40 -11.06 9.95 30.90 0.31 -10.76 16 18 H 0.11 2.99 5.44 -52.48 -0.29 2.71 16 19 C 0.07 2.03 5.49 -17.51 -0.10 1.94 16 20 N -0.87 -24.84 13.96 55.48 0.77 -24.07 16 21 Si 0.90 22.74 28.62 -169.99 -4.86 17.87 16 22 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.24 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.17 -2.05 6.59 -26.74 -0.18 -2.23 16 26 C 0.52 6.70 8.02 -10.87 -0.09 6.62 16 27 O -0.53 -8.80 17.59 5.56 0.10 -8.70 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.45 7.80 -51.93 -0.40 0.05 16 35 H 0.40 3.57 6.46 -40.82 -0.26 3.30 16 36 H 0.11 1.14 6.40 -52.49 -0.34 0.81 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.14 2.91 5.64 -52.48 -0.30 2.62 16 40 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 42 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -34.41 356.17 -7.57 -41.98 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.33 Total: 3.05 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.45 Total: -3.29 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.00 Total: -39.78 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.29 Total: -25.20 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.86 Total: 17.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.41 -7.57 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834297158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds