Wall clock time and date at job start Tue Mar 31 2020 13:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47253 * 2 1 4 4 C 1.46760 * 124.34849 * 89.99830 * 3 2 1 5 5 C 1.54473 * 105.47379 * 163.00835 * 4 3 2 6 6 H 1.08999 * 110.96842 * 267.26044 * 5 4 3 7 7 N 1.46500 * 110.97154 * 143.53454 * 5 4 3 8 8 C 1.34774 * 120.00217 * 154.99775 * 7 5 4 9 9 O 1.21593 * 119.99839 * 0.02562 * 8 7 5 10 10 C 1.47534 * 120.00107 * 180.27476 * 8 7 5 11 11 C 1.39668 * 120.19790 * 359.44890 * 10 8 7 12 12 C 1.37828 * 119.91876 * 179.71872 * 11 10 8 13 13 C 1.38576 * 120.32310 * 0.55968 * 12 11 10 14 14 C 1.38025 * 120.39914 * 359.71918 * 13 12 11 15 15 C 1.38828 * 120.07713 * 359.97438 * 14 13 12 16 16 O 1.35516 * 120.16345 * 180.02562 * 15 14 13 17 17 C 1.34811 * 117.00125 * 354.40165 * 16 15 14 18 18 H 1.08004 * 119.99841 * 5.05304 * 17 16 15 19 19 C 1.38702 * 120.00258 * 185.05052 * 17 16 15 20 20 N 1.31517 * 120.00163 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99575 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47259 * 90.00030 * 21 19 17 23 23 H 1.48499 * 109.46754 * 209.99695 * 21 19 17 24 24 H 1.48498 * 109.47240 * 329.99482 * 21 19 17 25 25 C 1.54632 * 101.76531 * 25.41298 * 5 4 3 26 26 C 1.34416 * 124.35046 * 270.02538 * 3 2 1 27 27 O 1.21282 * 124.93749 * 0.38298 * 26 3 2 28 28 H 1.09002 * 109.46781 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47413 * 300.00209 * 1 2 3 30 30 H 1.09004 * 109.46772 * 60.00141 * 1 2 3 31 31 H 1.09005 * 109.47539 * 240.00299 * 2 1 3 32 32 H 1.09004 * 109.47276 * 120.00018 * 2 1 3 33 33 H 1.09000 * 110.24969 * 44.00174 * 4 3 2 34 34 H 1.09003 * 110.24442 * 282.00924 * 4 3 2 35 35 H 0.97001 * 120.00044 * 334.99876 * 7 5 4 36 36 H 1.07999 * 120.03838 * 359.97438 * 11 10 8 37 37 H 1.07995 * 119.83508 * 180.25747 * 12 11 10 38 38 H 1.07998 * 119.79931 * 179.73768 * 13 12 11 39 39 H 1.08005 * 119.96134 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99887 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.48285 * 93.88181 * 25 5 4 42 42 H 1.09002 * 110.48524 * 216.52415 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1739 3.3444 0.7486 6 1 4.2327 3.1041 0.8451 7 7 2.8461 4.5640 1.4911 8 6 3.7678 5.5376 1.6286 9 8 4.8714 5.4040 1.1359 10 6 3.4396 6.7632 2.3815 11 6 2.1712 6.9238 2.9437 12 6 1.8727 8.0686 3.6509 13 6 2.8216 9.0678 3.7976 14 6 4.0773 8.9254 3.2426 15 6 4.3979 7.7765 2.5324 16 8 5.6304 7.6347 1.9871 17 6 6.4617 8.6927 2.0699 18 1 6.1650 9.5704 2.6250 19 6 7.6981 8.6541 1.4424 20 7 8.5089 9.6865 1.5228 21 14 8.2108 7.1362 0.4819 22 1 7.7756 7.2741 -0.9311 23 1 9.6881 6.9938 0.5331 24 1 7.5766 5.9341 1.0802 25 6 2.7687 3.4757 -0.7378 26 6 2.2707 2.0965 -1.1097 27 8 2.1210 1.6945 -2.2442 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8326 1.5532 1.9382 34 1 1.3637 2.5304 1.6431 35 1 1.9656 4.6708 1.8839 36 1 1.4267 6.1501 2.8281 37 1 0.8929 8.1895 4.0887 38 1 2.5772 9.9631 4.3499 39 1 4.8113 9.7088 3.3609 40 1 9.3733 9.6596 1.0836 41 1 1.9734 4.2122 -0.8528 42 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834297158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:17 Heat of formation + Delta-G solvation = -84.501115 kcal Electronic energy + Delta-G solvation = -26372.227542 eV Core-core repulsion = 22510.384574 eV Total energy + Delta-G solvation = -3861.842969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83670 -41.17417 -39.82901 -38.14350 -37.71056 -35.88101 -34.50764 -33.68134 -31.94676 -30.76162 -29.96828 -28.50430 -27.25998 -25.06359 -24.27290 -23.25621 -22.40629 -21.69609 -20.50411 -19.79592 -19.46300 -18.16191 -17.99068 -17.39096 -16.88576 -16.57052 -16.19750 -16.04086 -15.87407 -15.58600 -15.42837 -15.28483 -14.92353 -14.66176 -14.48558 -14.41079 -14.20177 -14.16720 -14.00155 -13.28066 -13.14437 -12.99125 -12.82032 -12.76734 -12.56222 -12.40567 -12.29217 -12.01239 -12.00565 -11.51722 -11.17115 -10.96003 -10.71414 -10.17690 -9.82891 -9.80803 -9.11877 -8.56885 -6.25543 0.08007 0.68801 1.26237 1.31517 1.41842 1.58696 1.81463 2.02594 2.18875 2.29561 2.77582 3.04112 3.18588 3.28257 3.46502 3.73255 3.94229 3.97396 4.06822 4.13950 4.26440 4.28896 4.48692 4.51327 4.53094 4.57171 4.60908 4.77108 4.81425 4.83971 4.88481 4.97780 5.10095 5.29634 5.31424 5.44413 5.50697 5.53533 5.64957 5.72962 5.85647 5.97572 6.18832 6.62116 6.80487 7.02182 7.39075 7.60333 8.53663 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003746 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.209136 B = 7472.478192 C = 9106.794725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.611 5.611 4 C 0.108 3.892 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.701 5.701 8 C 0.561 3.439 9 O -0.568 6.568 10 C -0.232 4.232 11 C -0.026 4.026 12 C -0.190 4.190 13 C -0.043 4.043 14 C -0.253 4.253 15 C 0.161 3.839 16 O -0.209 6.209 17 C -0.401 4.401 18 H 0.091 0.909 19 C 0.025 3.975 20 N -0.913 5.913 21 Si 0.955 3.045 22 H -0.279 1.279 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.169 4.169 26 C 0.518 3.482 27 O -0.578 6.578 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.419 0.581 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.285 0.715 41 H 0.120 0.880 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.086 -16.212 5.584 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.344 5.344 4 C -0.014 4.014 5 C 0.033 3.967 6 H 0.109 0.891 7 N -0.356 5.356 8 C 0.352 3.648 9 O -0.447 6.447 10 C -0.236 4.236 11 C -0.044 4.044 12 C -0.208 4.208 13 C -0.062 4.062 14 C -0.273 4.273 15 C 0.108 3.892 16 O -0.113 6.113 17 C -0.477 4.477 18 H 0.109 0.891 19 C -0.175 4.175 20 N -0.553 5.553 21 Si 0.779 3.221 22 H -0.205 1.205 23 H -0.193 1.193 24 H -0.185 1.185 25 C -0.210 4.210 26 C 0.307 3.693 27 O -0.459 6.459 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.259 0.741 36 H 0.190 0.810 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.079 -16.721 4.505 26.516 hybrid contribution 0.786 0.374 -0.592 1.052 sum -19.294 -16.347 3.913 25.589 Atomic orbital electron populations 1.22112 0.94688 1.03369 1.01966 1.21603 0.95216 0.79752 1.04040 1.48433 1.64859 1.14517 1.06629 1.22445 1.00747 0.91369 0.86880 1.21600 1.00802 0.85090 0.89179 0.89113 1.45422 1.16795 1.16731 1.56679 1.18333 0.83942 0.83449 0.79123 1.90873 1.24139 1.79997 1.49673 1.19240 0.96128 0.95902 1.12369 1.21396 0.92353 0.98307 0.92359 1.21248 1.01144 0.94177 1.04240 1.21442 0.90969 0.99419 0.94323 1.21324 1.00358 0.99136 1.06450 1.19795 0.84570 0.93951 0.90876 1.83757 1.20518 1.38091 1.68923 1.20875 0.97769 0.94817 1.34225 0.89144 1.25042 0.94873 1.00149 0.97427 1.69683 1.10431 1.30864 1.44356 0.85409 0.77091 0.80640 0.78911 1.20458 1.19323 1.18531 1.22821 1.03737 0.95724 0.98739 1.20973 0.76156 0.87840 0.84379 1.90690 1.55879 1.76169 1.23115 0.89734 0.90823 0.94691 0.91700 0.86989 0.86857 0.86962 0.74104 0.80970 0.81587 0.83484 0.87036 0.90519 0.86183 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 71.98 0.74 -0.92 16 2 C 0.11 1.40 6.65 86.38 0.57 1.98 16 3 N -0.61 -9.94 2.93 -817.99 -2.40 -12.34 16 4 C 0.11 1.17 7.08 86.83 0.61 1.79 16 5 C 0.14 2.80 3.53 46.05 0.16 2.97 16 6 H 0.09 2.34 7.54 -2.39 -0.02 2.32 16 7 N -0.70 -14.69 5.10 -440.70 -2.25 -16.94 16 8 C 0.56 19.74 7.76 86.70 0.67 20.41 16 9 O -0.57 -26.94 14.81 16.89 0.25 -26.69 16 10 C -0.23 -8.19 5.89 -19.98 -0.12 -8.31 16 11 C -0.03 -0.59 9.54 22.52 0.21 -0.37 16 12 C -0.19 -4.11 10.03 22.25 0.22 -3.89 16 13 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 14 C -0.25 -10.33 9.16 22.36 0.20 -10.13 16 15 C 0.16 7.41 6.66 22.91 0.15 7.56 16 16 O -0.21 -11.77 6.67 0.91 0.01 -11.77 16 17 C -0.40 -24.08 9.95 67.93 0.68 -23.41 16 18 H 0.09 5.52 5.44 -2.91 -0.02 5.50 16 19 C 0.03 1.52 5.49 84.85 0.47 1.98 16 20 N -0.91 -55.72 13.96 21.62 0.30 -55.42 16 21 Si 0.96 50.36 28.62 68.60 1.96 52.32 16 22 H -0.28 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 24 H -0.26 -14.55 7.11 99.48 0.71 -13.85 16 25 C -0.17 -3.94 6.59 30.59 0.20 -3.74 16 26 C 0.52 12.87 8.02 87.90 0.71 13.57 16 27 O -0.58 -19.49 17.59 -3.04 -0.05 -19.55 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 1.05 7.93 -2.38 -0.02 1.03 16 32 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.53 7.80 -2.39 -0.02 0.51 16 35 H 0.42 4.86 6.46 -92.71 -0.60 4.26 16 36 H 0.17 1.89 6.40 -2.91 -0.02 1.87 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16 40 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 41 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -86.99 356.17 3.99 -82.99 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.46 Total: 8.91 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.71 Total: -1.52 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -4.35 Total: -84.70 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: 0.20 Total: -58.00 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.96 Total: 52.32 kcal Total: -86.99 3.99 -82.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834297158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.510 kcal (2) G-P(sol) polarization free energy of solvation -86.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds