Wall clock time and date at job start Tue Mar 31 2020 12:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.36006 * 2 1 4 4 C 1.52977 * 109.41205 * 119.82545 * 2 1 3 5 5 C 1.50578 * 110.08819 * 163.77978 * 4 2 1 6 6 O 1.21282 * 119.75977 * 104.47392 * 5 4 2 7 7 N 1.35088 * 120.48744 * 284.45531 * 5 4 2 8 8 C 1.39577 * 120.55755 * 4.46480 * 7 5 4 9 9 C 1.38768 * 120.70771 * 228.07370 * 8 7 5 10 10 C 1.37819 * 120.03977 * 181.50917 * 9 8 7 11 11 C 1.39787 * 120.08381 * 0.40331 * 10 9 8 12 12 C 1.47473 * 120.02442 * 179.53054 * 11 10 9 13 13 O 1.21499 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.34751 * 119.99828 * 359.97438 * 12 11 10 15 15 C 1.45206 * 116.99792 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46953 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46691 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99950 * 21 19 17 25 25 C 1.39845 * 119.94945 * 359.79930 * 11 10 9 26 26 C 1.38117 * 119.71666 * 359.23600 * 25 11 10 27 27 N 1.40022 * 120.49464 * 182.14524 * 26 25 11 28 28 H 1.08995 * 109.46832 * 300.17879 * 1 2 3 29 29 H 1.08999 * 109.46259 * 60.17547 * 1 2 3 30 30 H 1.08999 * 109.47167 * 180.17546 * 1 2 3 31 31 H 1.09002 * 109.36963 * 43.58827 * 4 2 1 32 32 H 1.09002 * 109.26734 * 283.90313 * 4 2 1 33 33 H 0.97001 * 119.72083 * 184.44155 * 7 5 4 34 34 H 1.08005 * 119.98017 * 1.53311 * 9 8 7 35 35 H 1.08000 * 119.95907 * 180.38691 * 10 9 8 36 36 H 1.09000 * 109.47070 * 300.00009 * 15 14 12 37 37 H 1.09001 * 109.46626 * 60.00027 * 15 14 12 38 38 H 1.09000 * 109.47486 * 299.99948 * 16 15 14 39 39 H 1.09001 * 109.47362 * 60.00671 * 16 15 14 40 40 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.13535 * 179.50886 * 25 11 10 42 42 H 0.97006 * 120.60730 * 287.41247 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0385 -0.7176 1.2517 5 6 3.4911 -1.0784 1.0869 6 8 4.3406 -0.4348 1.6655 7 7 3.8549 -2.1141 0.2995 8 6 2.9007 -2.8079 -0.4464 9 6 2.8637 -4.1950 -0.4349 10 6 1.9356 -4.8668 -1.2008 11 6 1.0354 -4.1529 -1.9970 12 6 0.0496 -4.8733 -2.8240 13 8 -0.7329 -4.2523 -3.5155 14 8 0.0167 -6.2204 -2.8127 15 6 -0.9794 -6.8625 -3.6516 16 6 -0.8641 -8.3814 -3.5085 17 6 -1.8975 -9.0480 -4.3797 18 1 -2.5690 -8.4482 -4.9761 19 6 -1.9858 -10.4234 -4.4154 20 7 -1.1677 -11.1538 -3.6895 21 14 -3.2672 -11.2496 -5.4947 22 1 -4.0574 -10.2131 -6.2064 23 1 -2.5901 -12.1230 -6.4866 24 1 -4.1722 -12.0692 -4.6495 25 6 1.0741 -2.7550 -2.0130 26 6 1.9932 -2.0865 -1.2282 27 7 2.0166 -0.6868 -1.1975 28 1 -0.3633 0.5166 0.8883 29 1 -0.3632 0.5111 -0.8916 30 1 -0.3633 -1.0276 0.0031 31 1 1.4561 -1.6254 1.4096 32 1 1.9248 -0.0607 2.1141 33 1 4.7872 -2.3776 0.2518 34 1 3.5625 -4.7485 0.1750 35 1 1.9039 -5.9462 -1.1860 36 1 -1.9748 -6.5427 -3.3434 37 1 -0.8135 -6.5823 -4.6918 38 1 0.1313 -8.7010 -3.8170 39 1 -1.0297 -8.6620 -2.4683 40 1 -1.2294 -12.1215 -3.7148 41 1 0.3852 -2.2006 -2.6332 42 1 2.3498 -0.1817 -1.9557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837754383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:42 Heat of formation + Delta-G solvation = -95.187819 kcal Electronic energy + Delta-G solvation = -25775.798123 eV Core-core repulsion = 21913.491744 eV Total energy + Delta-G solvation = -3862.306379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34244 -40.02221 -38.74531 -36.85600 -36.15631 -35.20610 -33.38045 -32.45890 -30.70295 -30.14005 -28.66432 -28.38593 -25.39312 -24.11951 -23.20762 -21.80942 -21.01022 -20.74974 -20.32916 -18.39480 -17.90551 -17.37199 -17.00737 -16.52519 -16.19605 -15.95121 -15.76911 -15.25362 -14.83887 -14.65088 -14.52294 -14.03206 -13.59700 -13.53874 -13.42197 -13.08026 -12.70221 -12.65199 -12.41743 -12.36604 -12.18321 -11.83909 -11.34411 -11.28189 -11.06604 -10.80960 -10.73114 -10.64389 -10.35512 -10.27695 -9.69246 -9.67890 -9.43291 -9.31614 -8.92796 -8.47482 -8.27648 -6.13425 -4.17648 0.40402 1.01426 2.08216 2.61782 2.73991 2.96466 3.25704 3.27378 3.33730 3.38915 3.56680 4.04546 4.34223 4.36751 4.51980 4.55224 4.86105 4.91513 4.95970 5.01989 5.04728 5.22994 5.23525 5.27351 5.36384 5.52096 5.55515 5.82448 5.89231 5.90891 6.05782 6.05941 6.11896 6.25372 6.40542 6.59862 6.75178 6.90011 7.03389 7.51831 7.52530 7.58715 7.68759 7.83413 8.12180 8.21746 8.88125 9.47037 10.98130 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.506879 B =12090.328734 C =12705.541732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.088 0.912 4 C -0.157 4.157 5 C 0.536 3.464 6 O -0.535 6.535 7 N -0.668 5.668 8 C 0.148 3.852 9 C -0.138 4.138 10 C -0.046 4.046 11 C -0.115 4.115 12 C 0.500 3.500 13 O -0.514 6.514 14 O -0.352 6.352 15 C 0.076 3.924 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.051 4.051 26 C 0.139 3.861 27 N -0.784 5.784 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.410 0.590 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 21.166 9.263 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.106 0.894 4 C -0.198 4.198 5 C 0.325 3.675 6 O -0.411 6.411 7 N -0.316 5.316 8 C 0.051 3.949 9 C -0.158 4.158 10 C -0.065 4.065 11 C -0.117 4.117 12 C 0.345 3.655 13 O -0.404 6.404 14 O -0.268 6.268 15 C 0.004 3.996 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.072 4.072 26 C 0.042 3.958 27 N -0.430 5.430 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.594 21.536 9.613 25.101 hybrid contribution -0.324 -0.656 -0.998 1.238 sum 8.270 20.879 8.615 24.053 Atomic orbital electron populations 1.22330 0.95133 1.02941 1.02403 1.20628 0.93974 0.95605 0.82970 0.89380 1.22261 0.92492 1.03815 1.01270 1.20667 0.91634 0.78434 0.76766 1.90763 1.53347 1.50027 1.46981 1.43497 1.10406 1.32881 1.44795 1.18337 0.91267 0.91105 0.94194 1.20940 1.01174 0.91884 1.01825 1.21475 0.91566 1.01470 0.91994 1.19236 0.98512 0.92931 1.01056 1.20997 0.82328 0.82270 0.79910 1.90808 1.40134 1.69013 1.40494 1.86573 1.57085 1.19046 1.64066 1.23687 0.88139 0.95814 0.91992 1.19181 0.98523 0.84956 0.98620 1.21014 1.17444 0.91543 1.26397 0.92187 1.24980 0.96138 0.97326 0.95716 1.69977 1.37290 1.05646 1.39933 0.86421 0.81245 0.79456 0.80233 1.19583 1.20830 1.20819 1.21466 0.95657 0.92356 0.97719 1.17190 0.96139 0.84930 0.97509 1.44020 1.78278 1.01110 1.19622 0.91768 0.91666 0.92012 0.88831 0.87261 0.75162 0.84422 0.83204 0.92170 0.92180 0.95300 0.95293 0.92746 0.83874 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 9.31 37.16 0.35 -0.69 16 2 C 0.17 1.11 3.55 -68.01 -0.24 0.87 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.16 -1.14 4.82 -27.95 -0.13 -1.27 16 5 C 0.54 5.17 7.01 -10.90 -0.08 5.10 16 6 O -0.54 -7.01 17.92 5.56 0.10 -6.91 16 7 N -0.67 -5.49 5.23 -9.71 -0.05 -5.54 16 8 C 0.15 1.27 5.59 -83.54 -0.47 0.81 16 9 C -0.14 -1.17 9.96 -39.54 -0.39 -1.56 16 10 C -0.05 -0.49 9.60 -39.16 -0.38 -0.87 16 11 C -0.11 -1.47 5.88 -104.95 -0.62 -2.08 16 12 C 0.50 8.48 7.89 34.49 0.27 8.75 16 13 O -0.51 -9.86 16.13 -19.26 -0.31 -10.17 16 14 O -0.35 -6.68 9.45 -40.63 -0.38 -7.06 16 15 C 0.08 1.64 5.41 37.16 0.20 1.84 16 16 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 17 C -0.53 -14.50 9.11 -34.44 -0.31 -14.82 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.05 -0.55 9.52 -39.02 -0.37 -0.92 16 26 C 0.14 1.25 5.43 -83.56 -0.45 0.79 16 27 N -0.78 -5.70 4.83 -52.12 -0.25 -5.95 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.09 0.67 7.52 -51.93 -0.39 0.28 16 32 H 0.11 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.41 2.89 8.91 -40.82 -0.36 2.52 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.15 1.61 7.59 -52.49 -0.40 1.21 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.14 1.60 7.65 -52.48 -0.40 1.20 16 42 H 0.40 2.54 8.96 -40.82 -0.37 2.18 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -32.60 359.50 -8.32 -40.92 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.68 Total: 0.40 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.87 Total: -1.99 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.43 Total: -36.68 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.60 Total: -24.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.60 -8.32 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837754383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.264 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds