Wall clock time and date at job start Tue Mar 31 2020 12:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.36006 * 2 1 4 4 C 1.52977 * 109.41205 * 119.82545 * 2 1 3 5 5 C 1.50578 * 110.08819 * 163.77978 * 4 2 1 6 6 O 1.21282 * 119.75977 * 104.47392 * 5 4 2 7 7 N 1.35088 * 120.48744 * 284.45531 * 5 4 2 8 8 C 1.39577 * 120.55755 * 4.46480 * 7 5 4 9 9 C 1.38768 * 120.70771 * 228.07370 * 8 7 5 10 10 C 1.37819 * 120.03977 * 181.50917 * 9 8 7 11 11 C 1.39787 * 120.08381 * 0.40331 * 10 9 8 12 12 C 1.47473 * 120.02442 * 179.53054 * 11 10 9 13 13 O 1.21499 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.34751 * 119.99828 * 359.97438 * 12 11 10 15 15 C 1.45206 * 116.99792 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46953 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46691 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99950 * 21 19 17 25 25 C 1.39845 * 119.94945 * 359.79930 * 11 10 9 26 26 C 1.38117 * 119.71666 * 359.23600 * 25 11 10 27 27 N 1.40022 * 120.49464 * 182.14524 * 26 25 11 28 28 H 1.08995 * 109.46832 * 300.17879 * 1 2 3 29 29 H 1.08999 * 109.46259 * 60.17547 * 1 2 3 30 30 H 1.08999 * 109.47167 * 180.17546 * 1 2 3 31 31 H 1.09002 * 109.36963 * 43.58827 * 4 2 1 32 32 H 1.09002 * 109.26734 * 283.90313 * 4 2 1 33 33 H 0.97001 * 119.72083 * 184.44155 * 7 5 4 34 34 H 1.08005 * 119.98017 * 1.53311 * 9 8 7 35 35 H 1.08000 * 119.95907 * 180.38691 * 10 9 8 36 36 H 1.09000 * 109.47070 * 300.00009 * 15 14 12 37 37 H 1.09001 * 109.46626 * 60.00027 * 15 14 12 38 38 H 1.09000 * 109.47486 * 299.99948 * 16 15 14 39 39 H 1.09001 * 109.47362 * 60.00671 * 16 15 14 40 40 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.13535 * 179.50886 * 25 11 10 42 42 H 0.97006 * 120.60730 * 287.41247 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0385 -0.7176 1.2517 5 6 3.4911 -1.0784 1.0869 6 8 4.3406 -0.4348 1.6655 7 7 3.8549 -2.1141 0.2995 8 6 2.9007 -2.8079 -0.4464 9 6 2.8637 -4.1950 -0.4349 10 6 1.9356 -4.8668 -1.2008 11 6 1.0354 -4.1529 -1.9970 12 6 0.0496 -4.8733 -2.8240 13 8 -0.7329 -4.2523 -3.5155 14 8 0.0167 -6.2204 -2.8127 15 6 -0.9794 -6.8625 -3.6516 16 6 -0.8641 -8.3814 -3.5085 17 6 -1.8975 -9.0480 -4.3797 18 1 -2.5690 -8.4482 -4.9761 19 6 -1.9858 -10.4234 -4.4154 20 7 -1.1677 -11.1538 -3.6895 21 14 -3.2672 -11.2496 -5.4947 22 1 -4.0574 -10.2131 -6.2064 23 1 -2.5901 -12.1230 -6.4866 24 1 -4.1722 -12.0692 -4.6495 25 6 1.0741 -2.7550 -2.0130 26 6 1.9932 -2.0865 -1.2282 27 7 2.0166 -0.6868 -1.1975 28 1 -0.3633 0.5166 0.8883 29 1 -0.3632 0.5111 -0.8916 30 1 -0.3633 -1.0276 0.0031 31 1 1.4561 -1.6254 1.4096 32 1 1.9248 -0.0607 2.1141 33 1 4.7872 -2.3776 0.2518 34 1 3.5625 -4.7485 0.1750 35 1 1.9039 -5.9462 -1.1860 36 1 -1.9748 -6.5427 -3.3434 37 1 -0.8135 -6.5823 -4.6918 38 1 0.1313 -8.7010 -3.8170 39 1 -1.0297 -8.6620 -2.4683 40 1 -1.2294 -12.1215 -3.7148 41 1 0.3852 -2.2006 -2.6332 42 1 2.3498 -0.1817 -1.9557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837754383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:41 Heat of formation + Delta-G solvation = -115.881384 kcal Electronic energy + Delta-G solvation = -25776.695463 eV Core-core repulsion = 21913.491744 eV Total energy + Delta-G solvation = -3863.203719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14128 -41.33256 -39.67674 -37.74026 -37.44716 -36.06240 -35.42935 -33.18366 -32.35212 -31.29194 -29.44728 -28.98938 -27.17391 -25.30366 -24.02206 -23.01372 -22.53152 -21.43685 -21.39824 -19.33647 -18.88511 -18.42635 -18.12498 -17.88780 -17.51120 -17.40526 -16.72463 -16.51038 -16.07042 -15.60760 -15.44468 -15.13287 -14.80063 -14.65015 -14.37032 -14.14829 -13.96593 -13.75591 -13.37352 -13.13889 -13.06262 -13.04328 -12.76799 -12.62605 -12.60525 -12.52423 -11.91019 -11.90225 -11.53866 -11.49780 -11.44917 -11.35555 -11.07421 -10.60519 -10.17913 -9.71360 -8.98276 -8.26289 -6.38814 -0.53227 0.22733 1.21344 1.42020 1.42336 1.55325 1.56561 1.68828 2.03284 2.40532 2.52439 2.66539 3.08499 3.35458 3.64101 3.78438 3.79797 3.99259 4.11607 4.24474 4.24835 4.26101 4.30402 4.46361 4.52005 4.64483 4.70902 4.78420 4.93786 5.00925 5.02956 5.10257 5.23431 5.29853 5.38843 5.44877 5.49188 5.52618 5.70497 5.75446 6.03245 6.08107 6.37612 6.69016 6.75601 6.94318 6.96483 7.30890 8.86454 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.506879 B =12090.328734 C =12705.541732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.104 0.896 4 C -0.156 4.156 5 C 0.537 3.463 6 O -0.571 6.571 7 N -0.660 5.660 8 C 0.159 3.841 9 C -0.123 4.123 10 C -0.046 4.046 11 C -0.134 4.134 12 C 0.500 3.500 13 O -0.541 6.541 14 O -0.357 6.357 15 C 0.091 3.909 16 C 0.031 3.969 17 C -0.549 4.549 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.049 4.049 26 C 0.147 3.853 27 N -0.783 5.783 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.417 0.583 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.268 0.732 41 H 0.137 0.863 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 22.255 9.645 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.122 0.878 4 C -0.197 4.197 5 C 0.327 3.673 6 O -0.449 6.449 7 N -0.307 5.307 8 C 0.061 3.939 9 C -0.144 4.144 10 C -0.065 4.065 11 C -0.136 4.136 12 C 0.347 3.653 13 O -0.434 6.434 14 O -0.273 6.273 15 C 0.018 3.982 16 C -0.006 4.006 17 C -0.586 4.586 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.070 4.070 26 C 0.050 3.950 27 N -0.430 5.430 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.756 22.641 9.993 26.252 hybrid contribution -0.277 -0.904 -1.039 1.405 sum 8.479 21.738 8.953 24.992 Atomic orbital electron populations 1.22286 0.94795 1.02085 1.03186 1.20731 0.94106 0.96094 0.82069 0.87828 1.22321 0.90763 1.04341 1.02248 1.21052 0.92245 0.77967 0.76069 1.90756 1.54498 1.51224 1.48449 1.43453 1.10742 1.32379 1.44139 1.18370 0.90795 0.91201 0.93497 1.21100 1.00522 0.91825 1.00916 1.21467 0.91651 1.01394 0.92018 1.19060 0.98900 0.93418 1.02228 1.21717 0.82638 0.81182 0.79780 1.90784 1.41564 1.69050 1.41960 1.86554 1.56352 1.20688 1.63706 1.23194 0.88845 0.93714 0.92432 1.18981 0.97003 0.87614 0.96982 1.21404 1.18051 0.92304 1.26884 0.91781 1.25929 0.98261 0.98003 0.97022 1.70088 1.38947 1.06170 1.41322 0.85302 0.78457 0.78364 0.78344 1.18692 1.20114 1.20080 1.21403 0.95998 0.91468 0.98140 1.17141 0.95356 0.85809 0.96666 1.44109 1.78174 1.00365 1.20303 0.90242 0.91687 0.93625 0.88663 0.85913 0.74318 0.81729 0.83501 0.92142 0.92185 0.97305 0.97273 0.92344 0.84488 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.31 71.98 0.67 -1.02 16 2 C 0.18 1.83 3.55 45.01 0.16 1.99 16 3 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.16 -1.88 4.82 29.80 0.14 -1.74 16 5 C 0.54 9.22 7.01 87.57 0.61 9.83 16 6 O -0.57 -14.04 17.92 -3.03 -0.05 -14.10 16 7 N -0.66 -9.27 5.23 -302.85 -1.58 -10.85 16 8 C 0.16 2.37 5.59 38.42 0.21 2.59 16 9 C -0.12 -1.81 9.96 22.30 0.22 -1.59 16 10 C -0.05 -0.94 9.60 22.55 0.22 -0.73 16 11 C -0.13 -3.38 5.88 -20.08 -0.12 -3.49 16 12 C 0.50 17.26 7.89 70.26 0.55 17.82 16 13 O -0.54 -21.21 16.13 19.84 0.32 -20.89 16 14 O -0.36 -13.91 9.45 -56.62 -0.54 -14.44 16 15 C 0.09 4.03 5.41 71.98 0.39 4.42 16 16 C 0.03 1.65 5.35 29.85 0.16 1.81 16 17 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.38 5.46 84.65 0.46 0.85 16 20 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 21 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.05 -1.03 9.52 22.63 0.22 -0.81 16 26 C 0.15 2.40 5.43 38.19 0.21 2.60 16 27 N -0.78 -9.81 4.83 -318.82 -1.54 -11.35 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.09 1.15 7.52 -2.39 -0.02 1.13 16 32 H 0.12 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.42 4.86 8.91 -92.71 -0.83 4.04 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 3.10 7.59 -2.91 -0.02 3.08 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.14 3.04 7.65 -2.91 -0.02 3.02 16 42 H 0.41 4.33 8.96 -92.70 -0.83 3.49 16 Total: -1.00 -70.62 359.50 2.67 -67.95 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.59 Total: 10.80 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 4.34 Total: 2.06 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.84 Total: -76.55 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.27 Total: -49.43 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.62 2.67 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837754383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.929 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds