Wall clock time and date at job start Tue Mar 31 2020 12:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.41025 * 2 1 4 4 C 1.52936 * 109.41096 * 240.14893 * 2 1 3 5 5 C 1.50586 * 110.08292 * 196.30948 * 4 2 1 6 6 O 1.21292 * 119.77577 * 255.66475 * 5 4 2 7 7 N 1.35031 * 120.44212 * 75.64587 * 5 4 2 8 8 C 1.39560 * 120.49307 * 355.40969 * 7 5 4 9 9 C 1.38790 * 120.65826 * 131.18372 * 8 7 5 10 10 C 1.37818 * 120.04075 * 178.34693 * 9 8 7 11 11 C 1.39779 * 120.10673 * 0.50397 * 10 9 8 12 12 C 1.47475 * 120.02888 * 180.17756 * 11 10 9 13 13 O 1.21507 * 119.99479 * 179.71878 * 12 11 10 14 14 O 1.34752 * 120.00517 * 359.72688 * 12 11 10 15 15 C 1.45198 * 117.00139 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48494 * 109.47178 * 209.99936 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00183 * 21 19 17 25 25 C 1.39844 * 119.93173 * 359.90179 * 11 10 9 26 26 C 1.38091 * 119.71586 * 0.28200 * 25 11 10 27 27 N 1.40087 * 120.51235 * 177.50272 * 26 25 11 28 28 H 1.08993 * 109.47245 * 179.85424 * 1 2 3 29 29 H 1.09000 * 109.47047 * 299.85363 * 1 2 3 30 30 H 1.09005 * 109.46963 * 59.84946 * 1 2 3 31 31 H 1.08994 * 109.37123 * 76.11708 * 4 2 1 32 32 H 1.09000 * 109.26140 * 316.43202 * 4 2 1 33 33 H 0.97001 * 119.75814 * 175.44003 * 7 5 4 34 34 H 1.07996 * 119.98082 * 358.58395 * 9 8 7 35 35 H 1.08010 * 119.94258 * 180.26578 * 10 9 8 36 36 H 1.09002 * 109.47379 * 59.99489 * 15 14 12 37 37 H 1.09001 * 109.46782 * 299.99572 * 15 14 12 38 38 H 1.09001 * 109.47194 * 299.99482 * 16 15 14 39 39 H 1.08992 * 109.47399 * 59.99654 * 16 15 14 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.13980 * 180.30600 * 25 11 10 42 42 H 0.96989 * 120.60740 * 73.28658 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0383 -0.7180 -1.2511 5 6 3.4904 -1.0806 -1.0851 6 8 4.3417 -0.4366 -1.6609 7 7 3.8510 -2.1178 -0.2992 8 6 2.8937 -2.8086 0.4452 9 6 2.8427 -4.1953 0.4196 10 6 1.9141 -4.8658 1.1861 11 6 1.0150 -4.1511 1.9827 12 6 0.0246 -4.8705 2.8052 13 8 -0.7534 -4.2488 3.5014 14 8 -0.0175 -6.2172 2.7849 15 6 -1.0184 -6.8581 3.6190 16 6 -0.9143 -8.3767 3.4648 17 6 -1.9536 -9.0419 4.3300 18 1 -2.6212 -8.4415 4.9302 19 6 -2.0520 -10.4169 4.3554 20 7 -1.2394 -11.1480 3.6242 21 14 -3.3397 -11.2415 5.4285 22 1 -4.5939 -11.4142 4.6523 23 1 -2.8419 -12.5701 5.8667 24 1 -3.6070 -10.3956 6.6193 25 6 1.0593 -2.7536 2.0033 26 6 1.9893 -2.0868 1.2304 27 7 2.0146 -0.6865 1.1981 28 1 -0.3633 -1.0276 -0.0026 29 1 -0.3633 0.5116 0.8913 30 1 -0.3633 0.5162 -0.8887 31 1 1.9257 -0.0627 -2.1147 32 1 1.4546 -1.6252 -1.4071 33 1 4.7824 -2.3845 -0.2513 34 1 3.5336 -4.7494 -0.1985 35 1 1.8786 -5.9452 1.1682 36 1 -2.0115 -6.5293 3.3126 37 1 -0.8511 -6.5860 4.6612 38 1 -1.0818 -8.6485 2.4225 39 1 0.0787 -8.7058 3.7709 40 1 -1.3088 -12.1154 3.6417 41 1 0.3694 -2.1981 2.6214 42 1 2.3473 -0.1810 1.9561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837754385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:46 Heat of formation + Delta-G solvation = -95.047716 kcal Electronic energy + Delta-G solvation = -25780.458650 eV Core-core repulsion = 21918.158346 eV Total energy + Delta-G solvation = -3862.300304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34779 -40.02245 -38.74326 -36.85622 -36.15721 -35.21028 -33.37992 -32.45460 -30.70353 -30.14096 -28.66676 -28.38461 -25.39315 -24.11985 -23.20530 -21.81132 -21.01042 -20.74995 -20.33127 -18.39495 -17.90652 -17.37548 -17.00594 -16.52564 -16.19642 -15.95101 -15.76815 -15.25536 -14.83872 -14.64998 -14.52627 -14.03216 -13.59726 -13.53858 -13.42141 -13.07970 -12.69904 -12.64897 -12.41292 -12.36349 -12.18668 -11.84292 -11.34279 -11.27792 -11.07670 -10.79665 -10.73537 -10.63866 -10.36006 -10.27142 -9.69106 -9.67660 -9.42708 -9.33247 -8.93029 -8.47044 -8.28715 -6.13234 -4.17564 0.40101 1.01320 2.08222 2.61536 2.74276 2.96377 3.26661 3.27451 3.33396 3.37996 3.56838 4.04441 4.34169 4.36759 4.52152 4.55312 4.85963 4.91561 4.95922 5.01982 5.04726 5.23030 5.23618 5.27298 5.36383 5.52184 5.55475 5.82537 5.89204 5.91067 6.05696 6.05911 6.11765 6.25256 6.40427 6.59836 6.75249 6.89913 7.03520 7.51780 7.52429 7.58777 7.68921 7.83389 8.12125 8.21749 8.87962 9.47048 10.98267 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002317 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.429510 B =12082.166058 C =12693.916522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.088 0.912 4 C -0.157 4.157 5 C 0.536 3.464 6 O -0.536 6.536 7 N -0.668 5.668 8 C 0.147 3.853 9 C -0.137 4.137 10 C -0.046 4.046 11 C -0.115 4.115 12 C 0.500 3.500 13 O -0.514 6.514 14 O -0.352 6.352 15 C 0.076 3.924 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.051 4.051 26 C 0.139 3.861 27 N -0.784 5.784 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.410 0.590 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 21.121 -9.126 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.106 0.894 4 C -0.199 4.199 5 C 0.325 3.675 6 O -0.411 6.411 7 N -0.316 5.316 8 C 0.051 3.949 9 C -0.158 4.158 10 C -0.065 4.065 11 C -0.117 4.117 12 C 0.345 3.655 13 O -0.404 6.404 14 O -0.268 6.268 15 C 0.004 3.996 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.072 4.072 26 C 0.043 3.957 27 N -0.431 5.431 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.745 21.486 -9.474 25.058 hybrid contribution -0.341 -0.647 0.995 1.235 sum 8.404 20.839 -8.480 24.017 Atomic orbital electron populations 1.22333 0.95138 1.02941 1.02403 1.20615 0.93979 0.95605 0.82962 0.89370 1.22256 0.92511 1.03817 1.01269 1.20657 0.91639 0.78452 0.76757 1.90766 1.53199 1.50067 1.47102 1.43475 1.10430 1.32816 1.44843 1.18341 0.91314 0.91136 0.94143 1.20957 1.01147 0.91957 1.01736 1.21477 0.91602 1.01472 0.91975 1.19236 0.98427 0.92937 1.01100 1.21000 0.82332 0.82265 0.79912 1.90810 1.40490 1.68950 1.40198 1.86571 1.56938 1.19090 1.64162 1.23688 0.87989 0.95843 0.92119 1.19174 0.98499 0.84954 0.98611 1.20976 1.17386 0.91579 1.26546 0.92238 1.24977 0.96144 0.97307 0.95697 1.69965 1.37381 1.05712 1.39788 0.86475 0.81411 0.78788 0.80659 1.20467 1.21048 1.19714 1.21462 0.95574 0.92375 0.97774 1.17214 0.95994 0.84924 0.97612 1.44027 1.78375 1.01116 1.19544 0.92011 0.91665 0.91773 0.87248 0.88849 0.75151 0.84422 0.83206 0.92176 0.92173 0.95304 0.95300 0.92688 0.83869 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.30 37.16 0.35 -0.69 16 2 C 0.17 1.11 3.55 -68.05 -0.24 0.87 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.16 -1.14 4.82 -27.97 -0.13 -1.27 16 5 C 0.54 5.17 7.00 -10.93 -0.08 5.10 16 6 O -0.54 -7.01 17.92 5.55 0.10 -6.91 16 7 N -0.67 -5.49 5.23 -9.72 -0.05 -5.54 16 8 C 0.15 1.27 5.57 -83.54 -0.47 0.81 16 9 C -0.14 -1.17 9.96 -39.53 -0.39 -1.56 16 10 C -0.05 -0.49 9.60 -39.16 -0.38 -0.87 16 11 C -0.11 -1.46 5.88 -104.96 -0.62 -2.08 16 12 C 0.50 8.48 7.89 34.49 0.27 8.75 16 13 O -0.51 -9.86 16.13 -19.27 -0.31 -10.17 16 14 O -0.35 -6.68 9.45 -40.63 -0.38 -7.06 16 15 C 0.08 1.64 5.41 37.16 0.20 1.84 16 16 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 17 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.05 -0.55 9.52 -39.04 -0.37 -0.92 16 26 C 0.14 1.25 5.44 -83.54 -0.45 0.80 16 27 N -0.78 -5.71 4.83 -52.15 -0.25 -5.96 16 28 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.09 0.67 7.50 -51.93 -0.39 0.29 16 33 H 0.41 2.89 8.91 -40.82 -0.36 2.52 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.15 1.61 7.59 -52.48 -0.40 1.21 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.14 1.60 7.65 -52.48 -0.40 1.20 16 42 H 0.40 2.55 8.96 -40.82 -0.37 2.18 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -32.58 359.46 -8.32 -40.90 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.68 Total: 0.44 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.87 Total: -1.99 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.43 Total: -36.69 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.60 Total: -24.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.58 -8.32 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837754385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.150 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds