Wall clock time and date at job start Tue Mar 31 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.41025 * 2 1 4 4 C 1.52936 * 109.41096 * 240.14893 * 2 1 3 5 5 C 1.50586 * 110.08292 * 196.30948 * 4 2 1 6 6 O 1.21292 * 119.77577 * 255.66475 * 5 4 2 7 7 N 1.35031 * 120.44212 * 75.64587 * 5 4 2 8 8 C 1.39560 * 120.49307 * 355.40969 * 7 5 4 9 9 C 1.38790 * 120.65826 * 131.18372 * 8 7 5 10 10 C 1.37818 * 120.04075 * 178.34693 * 9 8 7 11 11 C 1.39779 * 120.10673 * 0.50397 * 10 9 8 12 12 C 1.47475 * 120.02888 * 180.17756 * 11 10 9 13 13 O 1.21507 * 119.99479 * 179.71878 * 12 11 10 14 14 O 1.34752 * 120.00517 * 359.72688 * 12 11 10 15 15 C 1.45198 * 117.00139 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48494 * 109.47178 * 209.99936 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00183 * 21 19 17 25 25 C 1.39844 * 119.93173 * 359.90179 * 11 10 9 26 26 C 1.38091 * 119.71586 * 0.28200 * 25 11 10 27 27 N 1.40087 * 120.51235 * 177.50272 * 26 25 11 28 28 H 1.08993 * 109.47245 * 179.85424 * 1 2 3 29 29 H 1.09000 * 109.47047 * 299.85363 * 1 2 3 30 30 H 1.09005 * 109.46963 * 59.84946 * 1 2 3 31 31 H 1.08994 * 109.37123 * 76.11708 * 4 2 1 32 32 H 1.09000 * 109.26140 * 316.43202 * 4 2 1 33 33 H 0.97001 * 119.75814 * 175.44003 * 7 5 4 34 34 H 1.07996 * 119.98082 * 358.58395 * 9 8 7 35 35 H 1.08010 * 119.94258 * 180.26578 * 10 9 8 36 36 H 1.09002 * 109.47379 * 59.99489 * 15 14 12 37 37 H 1.09001 * 109.46782 * 299.99572 * 15 14 12 38 38 H 1.09001 * 109.47194 * 299.99482 * 16 15 14 39 39 H 1.08992 * 109.47399 * 59.99654 * 16 15 14 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.13980 * 180.30600 * 25 11 10 42 42 H 0.96989 * 120.60740 * 73.28658 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0383 -0.7180 -1.2511 5 6 3.4904 -1.0806 -1.0851 6 8 4.3417 -0.4366 -1.6609 7 7 3.8510 -2.1178 -0.2992 8 6 2.8937 -2.8086 0.4452 9 6 2.8427 -4.1953 0.4196 10 6 1.9141 -4.8658 1.1861 11 6 1.0150 -4.1511 1.9827 12 6 0.0246 -4.8705 2.8052 13 8 -0.7534 -4.2488 3.5014 14 8 -0.0175 -6.2172 2.7849 15 6 -1.0184 -6.8581 3.6190 16 6 -0.9143 -8.3767 3.4648 17 6 -1.9536 -9.0419 4.3300 18 1 -2.6212 -8.4415 4.9302 19 6 -2.0520 -10.4169 4.3554 20 7 -1.2394 -11.1480 3.6242 21 14 -3.3397 -11.2415 5.4285 22 1 -4.5939 -11.4142 4.6523 23 1 -2.8419 -12.5701 5.8667 24 1 -3.6070 -10.3956 6.6193 25 6 1.0593 -2.7536 2.0033 26 6 1.9893 -2.0868 1.2304 27 7 2.0146 -0.6865 1.1981 28 1 -0.3633 -1.0276 -0.0026 29 1 -0.3633 0.5116 0.8913 30 1 -0.3633 0.5162 -0.8887 31 1 1.9257 -0.0627 -2.1147 32 1 1.4546 -1.6252 -1.4071 33 1 4.7824 -2.3845 -0.2513 34 1 3.5336 -4.7494 -0.1985 35 1 1.8786 -5.9452 1.1682 36 1 -2.0115 -6.5293 3.3126 37 1 -0.8511 -6.5860 4.6612 38 1 -1.0818 -8.6485 2.4225 39 1 0.0787 -8.7058 3.7709 40 1 -1.3088 -12.1154 3.6417 41 1 0.3694 -2.1981 2.6214 42 1 2.3473 -0.1810 1.9561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837754385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:45 Heat of formation + Delta-G solvation = -115.722190 kcal Electronic energy + Delta-G solvation = -25781.355162 eV Core-core repulsion = 21918.158346 eV Total energy + Delta-G solvation = -3863.196816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14622 -41.33338 -39.67487 -37.74069 -37.44755 -36.06721 -35.42871 -33.18008 -32.35204 -31.29313 -29.45051 -28.98825 -27.17294 -25.30467 -24.01979 -23.01362 -22.53351 -21.43718 -21.40132 -19.33518 -18.88850 -18.42403 -18.12757 -17.88767 -17.51122 -17.40472 -16.72534 -16.51345 -16.07239 -15.60726 -15.44441 -15.13291 -14.80034 -14.65142 -14.36297 -14.14958 -13.96669 -13.74933 -13.37343 -13.13064 -13.07186 -13.04502 -12.77304 -12.63314 -12.58911 -12.52344 -11.91355 -11.90371 -11.53969 -11.49256 -11.44746 -11.37174 -11.06856 -10.59879 -10.17374 -9.71657 -8.99268 -8.26093 -6.38744 -0.53507 0.22632 1.21259 1.41957 1.43655 1.54273 1.56427 1.68614 2.03525 2.40585 2.51934 2.67190 3.08632 3.35285 3.63965 3.78288 3.79719 3.99488 4.11494 4.24478 4.24771 4.26132 4.30343 4.46258 4.51930 4.64446 4.70889 4.78393 4.93742 5.00852 5.02955 5.10417 5.23296 5.29750 5.38839 5.44756 5.49224 5.52484 5.70419 5.75387 6.03293 6.08133 6.37669 6.68904 6.75471 6.94377 6.96565 7.30908 8.86424 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.002317 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.429510 B =12082.166058 C =12693.916522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.104 0.896 4 C -0.156 4.156 5 C 0.537 3.463 6 O -0.571 6.571 7 N -0.660 5.660 8 C 0.158 3.842 9 C -0.123 4.123 10 C -0.046 4.046 11 C -0.133 4.133 12 C 0.500 3.500 13 O -0.541 6.541 14 O -0.357 6.357 15 C 0.091 3.909 16 C 0.032 3.968 17 C -0.550 4.550 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.049 4.049 26 C 0.147 3.853 27 N -0.783 5.783 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.268 0.732 41 H 0.137 0.863 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 22.219 -9.500 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.122 0.878 4 C -0.197 4.197 5 C 0.327 3.673 6 O -0.449 6.449 7 N -0.307 5.307 8 C 0.061 3.939 9 C -0.143 4.143 10 C -0.065 4.065 11 C -0.136 4.136 12 C 0.347 3.653 13 O -0.434 6.434 14 O -0.273 6.273 15 C 0.018 3.982 16 C -0.005 4.005 17 C -0.588 4.588 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.070 4.070 26 C 0.050 3.950 27 N -0.430 5.430 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.896 22.601 -9.845 26.208 hybrid contribution -0.290 -0.896 1.034 1.399 sum 8.606 21.705 -8.812 24.956 Atomic orbital electron populations 1.22289 0.94802 1.02083 1.03185 1.20718 0.94108 0.96093 0.82064 0.87821 1.22316 0.90784 1.04339 1.02247 1.21042 0.92246 0.77988 0.76061 1.90759 1.54353 1.51263 1.48573 1.43431 1.10764 1.32316 1.44186 1.18374 0.90839 0.91230 0.93446 1.21116 1.00475 0.91898 1.00848 1.21469 0.91693 1.01394 0.91988 1.19059 0.98790 0.93427 1.02294 1.21719 0.82650 0.81175 0.79775 1.90786 1.41919 1.68987 1.41663 1.86552 1.56199 1.20735 1.63809 1.23194 0.88717 0.93737 0.92540 1.18975 0.96983 0.87616 0.96974 1.21378 1.18005 0.92350 1.27032 0.91761 1.25928 0.98297 0.97981 0.96978 1.70081 1.39055 1.06194 1.41184 0.85355 0.78576 0.77679 0.78897 1.19564 1.20436 1.18805 1.21399 0.95921 0.91485 0.98180 1.17165 0.95212 0.85805 0.96778 1.44116 1.78272 1.00372 1.20223 0.93625 0.91684 0.90252 0.85901 0.88684 0.74305 0.81736 0.83503 0.92136 0.92184 0.97292 0.97307 0.92338 0.84481 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.30 71.98 0.67 -1.03 16 2 C 0.18 1.83 3.55 45.00 0.16 1.99 16 3 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.16 -1.89 4.82 29.79 0.14 -1.74 16 5 C 0.54 9.22 7.00 87.58 0.61 9.84 16 6 O -0.57 -14.06 17.92 -3.07 -0.05 -14.11 16 7 N -0.66 -9.27 5.23 -302.90 -1.58 -10.85 16 8 C 0.16 2.37 5.57 38.43 0.21 2.58 16 9 C -0.12 -1.81 9.96 22.30 0.22 -1.59 16 10 C -0.05 -0.95 9.60 22.54 0.22 -0.73 16 11 C -0.13 -3.37 5.88 -20.08 -0.12 -3.48 16 12 C 0.50 17.26 7.89 70.26 0.55 17.81 16 13 O -0.54 -21.19 16.13 19.81 0.32 -20.88 16 14 O -0.36 -13.90 9.45 -56.62 -0.54 -14.44 16 15 C 0.09 4.03 5.41 71.98 0.39 4.42 16 16 C 0.03 1.67 5.35 29.85 0.16 1.83 16 17 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.40 5.46 84.66 0.46 0.87 16 20 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 21 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.05 -1.02 9.52 22.62 0.22 -0.80 16 26 C 0.15 2.40 5.44 38.17 0.21 2.60 16 27 N -0.78 -9.82 4.83 -318.91 -1.54 -11.36 16 28 H 0.04 0.63 8.06 -2.39 -0.02 0.61 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.12 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.09 1.15 7.50 -2.39 -0.02 1.13 16 33 H 0.42 4.86 8.91 -92.71 -0.83 4.04 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 3.10 7.59 -2.91 -0.02 3.07 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.14 3.04 7.65 -2.91 -0.02 3.02 16 42 H 0.41 4.33 8.96 -92.72 -0.83 3.50 16 Total: -1.00 -70.58 359.46 2.67 -67.91 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -0.59 Total: 10.93 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.34 Total: 2.04 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -2.84 Total: -76.59 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.27 Total: -49.43 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.58 2.67 -67.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837754385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.809 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds